Wall clock time and date at job start Tue Mar 31 2020 17:47:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37996 * 120.82358 * 2 1 4 4 C 1.39124 * 119.27017 * 179.97438 * 3 2 1 5 5 O 1.35497 * 119.52822 * 180.02562 * 4 3 2 6 6 N 1.32434 * 120.94735 * 359.97438 * 4 3 2 7 7 C 1.31637 * 121.80001 * 359.74654 * 6 4 3 8 8 C 1.39564 * 120.62597 * 0.53953 * 7 6 4 9 9 C 1.47617 * 120.49958 * 179.72104 * 8 7 6 10 10 O 1.21578 * 119.99762 * 142.74245 * 9 8 7 11 11 N 1.34775 * 119.99984 * 322.73765 * 9 8 7 12 12 C 1.47353 * 125.70593 * 354.87945 * 11 9 8 13 13 C 1.54654 * 105.13238 * 204.80077 * 12 11 9 14 14 H 1.08999 * 113.79202 * 200.28203 * 13 12 11 15 15 C 1.54445 * 108.64670 * 71.44731 * 13 12 11 16 16 C 1.55187 * 104.21774 * 215.59112 * 15 13 12 17 17 C 1.53727 * 106.54126 * 24.28374 * 16 15 13 18 18 H 1.09001 * 109.91006 * 239.18422 * 17 16 15 19 19 N 1.46496 * 110.07135 * 117.99451 * 17 16 15 20 20 C 1.36939 * 119.99971 * 160.01571 * 19 17 16 21 21 H 1.08002 * 119.99652 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00220 * 179.97438 * 20 19 17 23 23 N 1.31620 * 119.99989 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99968 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46787 * 60.00594 * 24 22 20 26 26 H 1.48500 * 109.46823 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47420 * 300.00188 * 24 22 20 28 28 C 1.53904 * 107.08004 * 358.54506 * 17 16 15 29 29 H 1.09004 * 112.92322 * 215.03990 * 28 17 16 30 30 C 1.47035 * 125.69848 * 174.82676 * 11 9 8 31 31 H 1.08996 * 109.46834 * 265.33190 * 1 2 3 32 32 H 1.08997 * 109.46846 * 25.33243 * 1 2 3 33 33 H 1.08998 * 109.46919 * 145.33399 * 1 2 3 34 34 H 1.08002 * 120.36417 * 359.95109 * 3 2 1 35 35 H 0.96699 * 114.00388 * 89.99981 * 5 4 3 36 36 H 1.08007 * 119.69106 * 180.28924 * 7 6 4 37 37 H 1.09001 * 110.31457 * 85.88249 * 12 11 9 38 38 H 1.09002 * 110.30885 * 323.70799 * 12 11 9 39 39 H 1.09012 * 110.38528 * 335.27691 * 15 13 12 40 40 H 1.08995 * 110.38846 * 97.64591 * 15 13 12 41 41 H 1.09003 * 110.56022 * 264.76385 * 16 15 13 42 42 H 1.08993 * 109.60894 * 143.28913 * 16 15 13 43 43 H 0.97001 * 120.00529 * 340.01640 * 19 17 16 44 44 H 0.96996 * 120.00006 * 179.97438 * 23 22 20 45 45 H 1.08997 * 109.82508 * 58.23779 * 30 11 9 46 46 H 1.08998 * 109.90514 * 297.31280 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3043 2.3078 0.0011 6 7 4.2548 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0071 8 6 2.2256 -1.2044 0.0007 9 6 1.5172 -2.4995 0.0007 10 8 0.4873 -2.6290 0.6337 11 7 2.0120 -3.5382 -0.7011 12 6 3.1845 -3.4932 -1.5925 13 6 2.9716 -4.6487 -2.5981 14 1 3.8860 -4.9738 -3.0944 15 6 1.8244 -4.2633 -3.5576 16 6 1.0914 -5.6031 -3.8329 17 6 1.3902 -6.5196 -2.6354 18 1 1.8879 -7.4270 -2.9775 19 7 0.1459 -6.8640 -1.9431 20 6 0.0983 -7.9617 -1.1259 21 1 0.9782 -8.5733 -0.9914 22 6 -1.0806 -8.2878 -0.4695 23 7 -2.1528 -7.5421 -0.6330 24 14 -1.1456 -9.7857 0.6448 25 1 -0.1558 -9.6305 1.7409 26 1 -2.5078 -9.9145 1.2219 27 1 -0.8251 -11.0030 -0.1430 28 6 2.3179 -5.7379 -1.6884 29 1 3.0485 -6.3742 -1.1889 30 6 1.4728 -4.9061 -0.7043 31 1 -0.3633 -0.0836 1.0242 32 1 -0.3633 0.9288 -0.4397 33 1 -0.3633 -0.8452 -0.5845 34 1 1.6936 2.1314 -0.0008 35 1 4.5070 2.6445 0.8846 36 1 4.1849 -2.0809 0.0125 37 1 4.0998 -3.6517 -1.0222 38 1 3.2249 -2.5383 -2.1166 39 1 1.1620 -3.5377 -3.0853 40 1 2.2262 -3.8624 -4.4881 41 1 1.4591 -6.0588 -4.7523 42 1 0.0188 -5.4246 -3.9077 43 1 -0.6444 -6.3144 -2.0636 44 1 -2.9766 -7.7701 -0.1746 45 1 0.4327 -4.8927 -1.0300 46 1 1.5415 -5.3344 0.2956 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026358435.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:56 Heat of formation + Delta-G solvation = -39.757492 kcal Electronic energy + Delta-G solvation = -29150.730020 eV Core-core repulsion = 25233.008323 eV Total energy + Delta-G solvation = -3917.721697 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.17656 -41.18530 -39.65259 -38.00569 -36.69522 -35.08719 -34.78010 -32.65034 -32.11049 -30.20254 -29.82901 -28.97478 -26.96360 -25.90590 -25.01064 -24.07237 -23.30738 -21.12051 -20.75436 -20.18693 -19.44795 -19.29231 -18.74857 -17.89620 -17.29322 -16.85727 -16.82860 -16.63720 -15.90708 -15.72909 -15.41716 -15.06679 -14.87714 -14.67502 -14.62415 -14.15740 -13.99154 -13.78542 -13.68873 -13.66784 -13.36603 -13.14852 -13.14275 -12.86206 -12.73449 -12.44449 -12.33270 -12.14156 -11.82298 -11.62149 -11.57303 -11.44452 -11.39309 -11.20844 -10.85019 -10.70697 -10.52640 -10.07966 -9.63187 -8.94705 -7.91746 -5.19143 -0.50012 0.02770 1.45380 1.48172 1.53672 1.58975 1.91124 2.37079 2.56970 2.67405 3.32001 3.36778 3.42225 3.50253 3.55382 3.73531 3.78460 3.90333 4.15252 4.24863 4.29989 4.32192 4.36399 4.41799 4.45027 4.57175 4.63483 4.65342 4.68213 4.72090 4.75575 4.80245 4.95725 4.98730 5.10978 5.16536 5.19707 5.27056 5.32556 5.35393 5.44871 5.50149 5.55743 5.60063 6.30027 6.48949 6.52004 6.74917 7.03260 7.35840 8.13771 8.34188 9.31606 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017143 B = 0.003254 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.904949 B = 8601.508598 C = 9331.815979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.019 3.981 3 C -0.184 4.184 4 C 0.334 3.666 5 O -0.485 6.485 6 N -0.524 5.524 7 C 0.169 3.831 8 C -0.206 4.206 9 C 0.568 3.432 10 O -0.577 6.577 11 N -0.606 5.606 12 C 0.096 3.904 13 C -0.086 4.086 14 H 0.145 0.855 15 C -0.107 4.107 16 C -0.123 4.123 17 C 0.170 3.830 18 H 0.054 0.946 19 N -0.730 5.730 20 C -0.230 4.230 21 H 0.079 0.921 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.965 3.035 25 H -0.281 1.281 26 H -0.302 1.302 27 H -0.275 1.275 28 C -0.112 4.112 29 H 0.091 0.909 30 C 0.141 3.859 31 H 0.081 0.919 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.176 0.824 35 H 0.426 0.574 36 H 0.183 0.817 37 H 0.097 0.903 38 H 0.089 0.911 39 H 0.042 0.958 40 H 0.093 0.907 41 H 0.087 0.913 42 H 0.040 0.960 43 H 0.369 0.631 44 H 0.247 0.753 45 H 0.048 0.952 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.237 18.889 -3.361 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.011 3.989 3 C -0.205 4.205 4 C 0.156 3.844 5 O -0.296 6.296 6 N -0.244 5.244 7 C 0.011 3.989 8 C -0.212 4.212 9 C 0.357 3.643 10 O -0.457 6.457 11 N -0.338 5.338 12 C -0.025 4.025 13 C -0.104 4.104 14 H 0.163 0.837 15 C -0.145 4.145 16 C -0.161 4.161 17 C 0.061 3.939 18 H 0.072 0.928 19 N -0.370 5.370 20 C -0.362 4.362 21 H 0.097 0.903 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.795 3.205 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.201 1.201 28 C -0.133 4.133 29 H 0.109 0.891 30 C 0.019 3.981 31 H 0.099 0.901 32 H 0.120 0.880 33 H 0.071 0.929 34 H 0.194 0.806 35 H 0.289 0.711 36 H 0.199 0.801 37 H 0.114 0.886 38 H 0.108 0.892 39 H 0.061 0.939 40 H 0.111 0.889 41 H 0.106 0.894 42 H 0.059 0.941 43 H 0.201 0.799 44 H 0.056 0.944 45 H 0.066 0.934 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 16.581 18.751 -3.503 25.274 hybrid contribution -2.027 -0.961 1.542 2.722 sum 14.555 17.789 -1.962 23.068 Atomic orbital electron populations 1.20874 0.89002 1.03601 1.03567 1.20462 0.97620 0.91065 0.89727 1.22135 0.93491 0.99703 1.05152 1.19523 0.87495 0.85459 0.91899 1.84662 1.75617 1.33113 1.36201 1.67275 1.42157 0.98589 1.16360 1.23015 0.89467 0.95977 0.90471 1.20749 0.95956 0.93147 1.11301 1.18055 0.83837 0.83452 0.78961 1.90813 1.25513 1.83997 1.45403 1.48556 1.31221 1.09274 1.44733 1.22728 0.87813 1.00518 0.91442 1.23310 0.99585 0.92960 0.94591 0.83746 1.22373 0.96361 0.95958 0.99785 1.22493 0.99703 0.95772 0.98097 1.21042 0.86461 0.95656 0.90716 0.92787 1.42822 1.09557 1.30657 1.53933 1.19556 0.95845 1.02726 1.18105 0.90335 1.25500 0.96102 1.02102 1.03250 1.69816 1.01711 1.42000 1.48646 0.85328 0.75950 0.80126 0.79097 1.20742 1.22847 1.20085 1.23429 0.97223 0.96612 0.96082 0.89072 1.21539 0.98383 0.79935 0.98275 0.90062 0.87989 0.92939 0.80612 0.71100 0.80073 0.88553 0.89235 0.93935 0.88870 0.89414 0.94105 0.79902 0.94416 0.93399 0.95458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.62 8.81 71.24 0.63 -1.99 16 2 C 0.02 0.44 5.94 -19.43 -0.12 0.32 16 3 C -0.18 -3.12 9.71 22.43 0.22 -2.90 16 4 C 0.33 6.09 7.74 84.81 0.66 6.74 16 5 O -0.48 -6.57 13.55 -87.98 -1.19 -7.76 16 6 N -0.52 -11.18 10.37 -307.80 -3.19 -14.37 16 7 C 0.17 3.62 9.35 85.04 0.80 4.42 16 8 C -0.21 -5.34 5.39 -19.99 -0.11 -5.45 16 9 C 0.57 19.32 6.97 86.72 0.60 19.93 16 10 O -0.58 -25.22 15.37 -3.96 -0.06 -25.28 16 11 N -0.61 -18.83 2.84 -816.57 -2.32 -21.14 16 12 C 0.10 1.97 4.46 86.78 0.39 2.36 16 13 C -0.09 -1.78 4.26 -8.61 -0.04 -1.81 16 14 H 0.14 1.95 8.14 -2.39 -0.02 1.93 16 15 C -0.11 -2.54 5.91 31.84 0.19 -2.36 16 16 C -0.12 -3.64 6.60 31.59 0.21 -3.43 16 17 C 0.17 6.14 3.25 45.54 0.15 6.29 16 18 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 19 N -0.73 -35.85 3.54 -320.34 -1.14 -36.98 16 20 C -0.23 -12.56 9.93 84.03 0.83 -11.72 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 23 N -0.97 -61.25 13.06 21.65 0.28 -60.97 16 24 Si 0.97 47.15 29.55 68.60 2.03 49.18 16 25 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 26 H -0.30 -15.12 7.11 99.48 0.71 -14.41 16 27 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 28 C -0.11 -3.45 3.89 -8.99 -0.03 -3.48 16 29 H 0.09 2.68 8.14 -2.38 -0.02 2.66 16 30 C 0.14 5.48 5.43 86.65 0.47 5.95 16 31 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 32 H 0.10 1.60 8.07 -2.39 -0.02 1.58 16 33 H 0.05 1.54 6.83 -2.39 -0.02 1.52 16 34 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 35 H 0.43 1.34 9.06 -74.06 -0.67 0.67 16 36 H 0.18 3.18 5.86 -2.91 -0.02 3.16 16 37 H 0.10 1.48 6.99 -2.39 -0.02 1.46 16 38 H 0.09 1.59 7.21 -2.39 -0.02 1.58 16 39 H 0.04 1.22 7.29 -2.38 -0.02 1.21 16 40 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.04 1.43 7.56 -2.39 -0.02 1.42 16 43 H 0.37 20.28 6.95 -92.71 -0.64 19.63 16 44 H 0.25 15.34 8.31 -92.71 -0.77 14.57 16 45 H 0.05 2.31 6.30 -2.39 -0.02 2.29 16 46 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -78.64 366.05 -0.56 -79.20 By element: Atomic # 1 Polarization: 29.59 SS G_CDS: -0.28 Total: 29.31 kcal Atomic # 6 Polarization: 3.50 SS G_CDS: 5.31 Total: 8.81 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -6.36 Total: -133.46 kcal Atomic # 8 Polarization: -31.79 SS G_CDS: -1.25 Total: -33.04 kcal Atomic # 14 Polarization: 47.15 SS G_CDS: 2.03 Total: 49.18 kcal Total: -78.64 -0.56 -79.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026358435.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.439 kcal (2) G-P(sol) polarization free energy of solvation -78.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds