Wall clock time and date at job start Tue Mar 31 2020 16:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.41024 * 2 1 4 4 C 1.38338 * 119.45739 * 179.72391 * 3 2 1 5 5 C 1.39985 * 118.35009 * 0.27131 * 4 3 2 6 6 C 1.47524 * 120.59681 * 179.97438 * 5 4 3 7 7 O 1.21596 * 119.99557 * 215.06507 * 6 5 4 8 8 N 1.34770 * 120.00223 * 35.06021 * 6 5 4 9 9 C 1.49623 * 126.07116 * 4.98171 * 8 6 5 10 10 C 1.51761 * 102.37940 * 154.30327 * 9 8 6 11 11 H 1.08998 * 111.74322 * 288.25315 * 10 9 8 12 12 C 1.51566 * 123.23693 * 151.77325 * 10 9 8 13 13 C 1.56340 * 101.81373 * 208.17332 * 12 10 9 14 14 C 1.56006 * 105.76801 * 25.44006 * 13 12 10 15 15 H 1.08993 * 110.64077 * 125.64865 * 14 13 12 16 16 N 1.46501 * 110.52204 * 248.33655 * 14 13 12 17 17 C 1.36940 * 119.99838 * 269.56567 * 16 14 13 18 18 H 1.07999 * 120.00308 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99958 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47498 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47335 * 120.00107 * 21 19 17 24 24 H 1.48499 * 109.47242 * 239.99713 * 21 19 17 25 25 C 1.49703 * 103.98780 * 6.96059 * 14 13 12 26 26 H 1.09000 * 108.54681 * 76.80031 * 25 14 13 27 27 C 1.49286 * 126.07292 * 185.29933 * 8 6 5 28 28 C 1.40283 * 118.80786 * 0.02562 * 5 4 3 29 29 O 1.35419 * 119.80271 * 179.97438 * 28 5 4 30 30 N 1.31888 * 119.40578 * 180.31007 * 2 1 3 31 31 H 1.08998 * 109.46762 * 90.00108 * 1 2 3 32 32 H 1.08990 * 109.47403 * 210.00595 * 1 2 3 33 33 H 1.09002 * 109.46906 * 330.00370 * 1 2 3 34 34 H 1.07996 * 120.26782 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.82009 * 180.25353 * 4 3 2 36 36 H 1.09000 * 110.80319 * 272.63390 * 9 8 6 37 37 H 1.08998 * 110.80480 * 36.13815 * 9 8 6 38 38 H 1.08997 * 110.96038 * 90.04214 * 12 10 9 39 39 H 1.08997 * 110.99565 * 326.31773 * 12 10 9 40 40 H 1.08998 * 110.18800 * 266.36378 * 13 12 10 41 41 H 1.09004 * 110.18997 * 144.51850 * 13 12 10 42 42 H 0.96996 * 119.99969 * 89.57201 * 16 14 13 43 43 H 0.97001 * 120.00480 * 180.02562 * 20 19 17 44 44 H 1.09008 * 110.39377 * 292.37046 * 27 8 6 45 45 H 1.08999 * 110.40228 * 54.65849 * 27 8 6 46 46 H 0.96703 * 113.99803 * 90.00045 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2053 0.0000 4 6 3.5698 1.2064 0.0058 5 6 4.2356 -0.0250 0.0057 6 6 5.7097 -0.0816 0.0112 7 8 6.2864 -0.9649 -0.5936 8 7 6.4172 0.8457 0.6863 9 6 5.8521 1.9235 1.5568 10 6 6.9956 2.2007 2.5152 11 1 7.1317 1.3870 3.2275 12 6 7.2189 3.5470 3.1747 13 6 8.7670 3.5436 3.3930 14 6 9.3458 2.5821 2.3093 15 1 10.1131 3.0845 1.7204 16 7 9.8885 1.3726 2.9329 17 6 11.2028 1.3300 3.3151 18 1 11.8392 2.1882 3.1572 19 6 11.7171 0.1838 3.9054 20 7 10.9415 -0.8618 4.0984 21 14 13.5097 0.1259 4.4274 22 1 14.1617 1.4202 4.1035 23 1 13.5918 -0.1179 5.8900 24 1 14.2010 -0.9709 3.7033 25 6 8.1635 2.2467 1.4545 26 1 7.9566 3.0943 0.8010 27 6 7.9036 0.9841 0.6932 28 6 3.4758 -1.2042 -0.0009 29 8 4.0990 -2.4065 -0.0016 30 7 2.1546 -1.1489 -0.0062 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8898 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.1224 2.1344 0.0100 36 1 5.6128 2.8099 0.9693 37 1 4.9743 1.5659 2.0951 38 1 6.6911 3.6072 4.1265 39 1 6.9202 4.3602 2.5134 40 1 9.0055 3.1737 4.3902 41 1 9.1682 4.5481 3.2578 42 1 9.3168 0.6020 3.0750 43 1 11.3007 -1.6627 4.5112 44 1 8.3619 0.1343 1.1992 45 1 8.2822 1.0680 -0.3255 46 1 4.2763 -2.7581 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026365595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:50 Heat of formation + Delta-G solvation = -1.737284 kcal Electronic energy + Delta-G solvation = -28720.398134 eV Core-core repulsion = 24804.325118 eV Total energy + Delta-G solvation = -3916.073017 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.16289 -40.23509 -38.36278 -37.35548 -35.26459 -33.55087 -33.17024 -31.88477 -30.87762 -29.68525 -28.53789 -27.90071 -25.58835 -23.93722 -23.57553 -23.23121 -22.42052 -20.20082 -19.76641 -18.88024 -18.72784 -17.50985 -17.18918 -16.98870 -16.30932 -15.88041 -15.28061 -14.92836 -14.77141 -14.46092 -14.37448 -14.18426 -13.71471 -13.62940 -13.45345 -13.10831 -12.83131 -12.67598 -12.55550 -12.49795 -12.31040 -11.89401 -11.80030 -11.48097 -11.25424 -11.00241 -10.86001 -10.72971 -10.50849 -10.32700 -10.25718 -10.09085 -10.05543 -9.72362 -9.61749 -9.51484 -9.07766 -8.94312 -8.53785 -6.99887 -5.79221 -3.08567 0.40439 0.82456 2.72261 2.83131 3.23546 3.42029 3.47793 3.50160 3.50671 4.09401 4.22260 4.32944 4.44770 4.57096 4.63860 4.90156 4.91550 5.02663 5.13081 5.19979 5.22432 5.24072 5.30803 5.40158 5.53073 5.57595 5.59003 5.63994 5.67612 5.75999 5.79251 5.88465 5.95830 6.10747 6.14054 6.21476 6.25288 6.33279 6.41155 6.49414 6.61885 6.77121 7.00371 7.30908 7.52828 7.61773 7.69189 8.20990 8.38761 9.50399 10.06410 10.40856 11.43082 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002953 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.254581 B = 9478.039996 C =10426.064367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.169 3.831 3 C -0.192 4.192 4 C -0.029 4.029 5 C -0.198 4.198 6 C 0.574 3.426 7 O -0.515 6.515 8 N -0.619 5.619 9 C 0.115 3.885 10 C -0.126 4.126 11 H 0.095 0.905 12 C -0.098 4.098 13 C -0.145 4.145 14 C 0.197 3.803 15 H 0.057 0.943 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.280 1.280 23 H -0.292 1.292 24 H -0.292 1.292 25 C -0.120 4.120 26 H 0.068 0.932 27 C 0.134 3.866 28 C 0.370 3.630 29 O -0.462 6.462 30 N -0.508 5.508 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.144 0.856 35 H 0.147 0.853 36 H 0.071 0.929 37 H 0.074 0.926 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.076 0.924 41 H 0.053 0.947 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.070 0.930 46 H 0.405 0.595 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.110 9.206 -5.638 23.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.211 4.211 4 C -0.054 4.054 5 C -0.204 4.204 6 C 0.361 3.639 7 O -0.390 6.390 8 N -0.354 5.354 9 C -0.007 4.007 10 C -0.145 4.145 11 H 0.113 0.887 12 C -0.136 4.136 13 C -0.186 4.186 14 C 0.085 3.915 15 H 0.075 0.925 16 N -0.359 5.359 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.208 4.208 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.206 1.206 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.140 4.140 26 H 0.086 0.914 27 C 0.014 3.986 28 C 0.190 3.810 29 O -0.269 6.269 30 N -0.228 5.228 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.162 0.838 35 H 0.165 0.835 36 H 0.089 0.911 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.080 0.920 40 H 0.095 0.905 41 H 0.072 0.928 42 H 0.219 0.781 43 H 0.065 0.935 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -21.059 7.893 -6.602 23.438 hybrid contribution 1.321 0.355 0.894 1.634 sum -19.738 8.248 -5.708 22.140 Atomic orbital electron populations 1.20816 0.88183 1.03938 1.03558 1.21261 0.97044 0.87242 0.91416 1.21894 0.94427 0.99542 1.05280 1.21896 0.94418 0.97354 0.91759 1.21067 0.95020 0.94472 1.09891 1.17464 0.85597 0.81254 0.79619 1.90868 1.70916 1.33766 1.43478 1.49741 1.07917 1.30497 1.47270 1.21961 0.96802 0.90176 0.91752 1.22698 0.94624 1.00107 0.97118 0.88718 1.21826 0.97730 0.94533 0.99560 1.23869 0.92768 0.99643 1.02333 1.20023 0.91486 0.89137 0.90849 0.92452 1.42433 1.09593 1.12120 1.71740 1.19282 0.86784 0.98651 1.32493 0.91061 1.24742 0.97953 0.96304 1.01800 1.69659 1.34762 1.04223 1.49220 0.86149 0.84982 0.77303 0.77915 1.20573 1.21950 1.21884 1.22082 0.98373 0.96913 0.96630 0.91404 1.20958 0.78007 0.99165 1.00494 1.19095 0.86083 0.85000 0.90808 1.84775 1.76448 1.32015 1.33701 1.67120 1.09271 1.30448 1.15962 0.89874 0.90081 0.90133 0.83793 0.83534 0.91091 0.90748 0.92052 0.91989 0.90549 0.92802 0.78126 0.93519 0.89549 0.91188 0.73614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.63 10.16 36.01 0.37 -0.26 16 2 C 0.17 1.59 6.78 -82.52 -0.56 1.03 16 3 C -0.19 -1.52 9.71 -39.50 -0.38 -1.91 16 4 C -0.03 -0.28 8.28 -38.89 -0.32 -0.60 16 5 C -0.20 -2.63 5.50 -104.69 -0.58 -3.21 16 6 C 0.57 9.32 7.42 -12.48 -0.09 9.23 16 7 O -0.51 -10.54 16.34 -12.30 -0.20 -10.74 16 8 N -0.62 -9.09 3.42 -172.66 -0.59 -9.68 16 9 C 0.11 1.28 4.88 -2.93 -0.01 1.27 16 10 C -0.13 -1.68 3.09 -89.32 -0.28 -1.96 16 11 H 0.09 1.54 7.87 -51.93 -0.41 1.13 16 12 C -0.10 -1.19 6.59 -25.66 -0.17 -1.36 16 13 C -0.15 -2.25 6.74 -23.33 -0.16 -2.41 16 14 C 0.20 3.55 3.47 -67.95 -0.24 3.31 16 15 H 0.06 1.06 8.09 -51.93 -0.42 0.64 16 16 N -0.72 -16.82 4.85 -53.45 -0.26 -17.08 16 17 C -0.24 -6.41 9.96 -15.06 -0.15 -6.56 16 18 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 20 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 21 Si 0.91 22.11 29.55 -169.99 -5.02 17.08 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 24 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 25 C -0.12 -1.81 2.29 -91.23 -0.21 -2.02 16 26 H 0.07 0.89 7.93 -51.93 -0.41 0.48 16 27 C 0.13 2.25 6.68 -4.12 -0.03 2.22 16 28 C 0.37 5.15 7.74 -16.61 -0.13 5.03 16 29 O -0.46 -6.67 12.21 -35.53 -0.43 -7.11 16 30 N -0.51 -6.43 10.28 -9.21 -0.09 -6.52 16 31 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.08 0.28 8.07 -51.93 -0.42 -0.14 16 34 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.15 1.12 5.80 -52.49 -0.30 0.82 16 36 H 0.07 0.62 7.11 -51.93 -0.37 0.25 16 37 H 0.07 0.75 7.24 -51.93 -0.38 0.37 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.39 7.98 -51.93 -0.41 0.97 16 41 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.38 9.71 6.72 -40.82 -0.27 9.44 16 43 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 44 H 0.09 1.75 7.22 -51.92 -0.37 1.38 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.40 4.07 9.06 45.56 0.41 4.48 16 LS Contribution 371.95 15.07 5.61 5.61 Total: -1.00 -34.49 371.95 -9.17 -43.66 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -5.87 Total: 10.31 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: -3.03 Total: 1.39 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.22 Total: -60.20 kcal Atomic # 8 Polarization: -17.21 SS G_CDS: -0.63 Total: -17.84 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.49 -9.17 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.918 kcal (2) G-P(sol) polarization free energy of solvation -34.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds