Wall clock time and date at job start Tue Mar 31 2020 16:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38357 * 119.41024 * 2 1 4 4 C 1.38338 * 119.45739 * 179.72391 * 3 2 1 5 5 C 1.39985 * 118.35009 * 0.27131 * 4 3 2 6 6 C 1.47524 * 120.59681 * 179.97438 * 5 4 3 7 7 O 1.21596 * 119.99557 * 215.06507 * 6 5 4 8 8 N 1.34770 * 120.00223 * 35.06021 * 6 5 4 9 9 C 1.49623 * 126.07116 * 4.98171 * 8 6 5 10 10 C 1.51761 * 102.37940 * 154.30327 * 9 8 6 11 11 H 1.08998 * 111.74322 * 288.25315 * 10 9 8 12 12 C 1.51566 * 123.23693 * 151.77325 * 10 9 8 13 13 C 1.56340 * 101.81373 * 208.17332 * 12 10 9 14 14 C 1.56006 * 105.76801 * 25.44006 * 13 12 10 15 15 H 1.08993 * 110.64077 * 125.64865 * 14 13 12 16 16 N 1.46501 * 110.52204 * 248.33655 * 14 13 12 17 17 C 1.36940 * 119.99838 * 269.56567 * 16 14 13 18 18 H 1.07999 * 120.00308 * 0.02562 * 17 16 14 19 19 C 1.38811 * 119.99958 * 180.02562 * 17 16 14 20 20 N 1.31614 * 120.00138 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 119.99981 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47498 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47335 * 120.00107 * 21 19 17 24 24 H 1.48499 * 109.47242 * 239.99713 * 21 19 17 25 25 C 1.49703 * 103.98780 * 6.96059 * 14 13 12 26 26 H 1.09000 * 108.54681 * 76.80031 * 25 14 13 27 27 C 1.49286 * 126.07292 * 185.29933 * 8 6 5 28 28 C 1.40283 * 118.80786 * 0.02562 * 5 4 3 29 29 O 1.35419 * 119.80271 * 179.97438 * 28 5 4 30 30 N 1.31888 * 119.40578 * 180.31007 * 2 1 3 31 31 H 1.08998 * 109.46762 * 90.00108 * 1 2 3 32 32 H 1.08990 * 109.47403 * 210.00595 * 1 2 3 33 33 H 1.09002 * 109.46906 * 330.00370 * 1 2 3 34 34 H 1.07996 * 120.26782 * 359.97438 * 3 2 1 35 35 H 1.08001 * 120.82009 * 180.25353 * 4 3 2 36 36 H 1.09000 * 110.80319 * 272.63390 * 9 8 6 37 37 H 1.08998 * 110.80480 * 36.13815 * 9 8 6 38 38 H 1.08997 * 110.96038 * 90.04214 * 12 10 9 39 39 H 1.08997 * 110.99565 * 326.31773 * 12 10 9 40 40 H 1.08998 * 110.18800 * 266.36378 * 13 12 10 41 41 H 1.09004 * 110.18997 * 144.51850 * 13 12 10 42 42 H 0.96996 * 119.99969 * 89.57201 * 16 14 13 43 43 H 0.97001 * 120.00480 * 180.02562 * 20 19 17 44 44 H 1.09008 * 110.39377 * 292.37046 * 27 8 6 45 45 H 1.08999 * 110.40228 * 54.65849 * 27 8 6 46 46 H 0.96703 * 113.99803 * 90.00045 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1865 1.2053 0.0000 4 6 3.5698 1.2064 0.0058 5 6 4.2356 -0.0250 0.0057 6 6 5.7097 -0.0816 0.0112 7 8 6.2864 -0.9649 -0.5936 8 7 6.4172 0.8457 0.6863 9 6 5.8521 1.9235 1.5568 10 6 6.9956 2.2007 2.5152 11 1 7.1317 1.3870 3.2275 12 6 7.2189 3.5470 3.1747 13 6 8.7670 3.5436 3.3930 14 6 9.3458 2.5821 2.3093 15 1 10.1131 3.0845 1.7204 16 7 9.8885 1.3726 2.9329 17 6 11.2028 1.3300 3.3151 18 1 11.8392 2.1882 3.1572 19 6 11.7171 0.1838 3.9054 20 7 10.9415 -0.8618 4.0984 21 14 13.5097 0.1259 4.4274 22 1 14.1617 1.4202 4.1035 23 1 13.5918 -0.1179 5.8900 24 1 14.2010 -0.9709 3.7033 25 6 8.1635 2.2467 1.4545 26 1 7.9566 3.0943 0.8010 27 6 7.9036 0.9841 0.6932 28 6 3.4758 -1.2042 -0.0009 29 8 4.0990 -2.4065 -0.0016 30 7 2.1546 -1.1489 -0.0062 31 1 -0.3633 0.0000 -1.0277 32 1 -0.3633 -0.8898 0.5139 33 1 -0.3633 0.8900 0.5138 34 1 1.6412 2.1375 -0.0004 35 1 4.1224 2.1344 0.0100 36 1 5.6128 2.8099 0.9693 37 1 4.9743 1.5659 2.0951 38 1 6.6911 3.6072 4.1265 39 1 6.9202 4.3602 2.5134 40 1 9.0055 3.1737 4.3902 41 1 9.1682 4.5481 3.2578 42 1 9.3168 0.6020 3.0750 43 1 11.3007 -1.6627 4.5112 44 1 8.3619 0.1343 1.1992 45 1 8.2822 1.0680 -0.3255 46 1 4.2763 -2.7581 0.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026365595.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:49 Heat of formation + Delta-G solvation = -28.468788 kcal Electronic energy + Delta-G solvation = -28721.557299 eV Core-core repulsion = 24804.325118 eV Total energy + Delta-G solvation = -3917.232182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16530 -41.30680 -39.59110 -38.32618 -36.71153 -35.11917 -34.16996 -32.63227 -32.58652 -30.86908 -29.91433 -28.68631 -27.03080 -25.19240 -24.95342 -24.30669 -23.37249 -21.24859 -20.89355 -20.27328 -19.67451 -19.38659 -18.21705 -18.02184 -17.54513 -16.81506 -16.64088 -16.33473 -15.94506 -15.81343 -15.38406 -15.27334 -14.92699 -14.89738 -14.58366 -14.32348 -13.93501 -13.71574 -13.53246 -13.30151 -13.14371 -13.06883 -13.00597 -12.87367 -12.68455 -12.63018 -12.32193 -12.18697 -12.04630 -11.86434 -11.50083 -11.37757 -11.28770 -11.02816 -10.94105 -10.82827 -10.51044 -9.96220 -9.70299 -8.97530 -7.93476 -5.20652 -0.44470 0.06868 1.45383 1.46549 1.55925 1.57873 1.73502 2.39121 2.56273 2.65816 2.99101 3.30951 3.41160 3.62007 3.66494 3.74695 3.92980 3.94329 4.06884 4.20490 4.25416 4.28541 4.40004 4.44245 4.49316 4.61429 4.67990 4.70883 4.72955 4.82723 4.86607 4.92583 4.93838 4.99003 5.06991 5.08255 5.16418 5.21054 5.25516 5.40262 5.46404 5.52472 5.54837 5.70811 6.29047 6.35492 6.45930 6.80715 6.99583 7.34829 8.13669 8.34063 9.30236 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018116 B = 0.002953 C = 0.002685 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1545.254581 B = 9478.039996 C =10426.064367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.161 3.839 3 C -0.171 4.171 4 C -0.020 4.020 5 C -0.219 4.219 6 C 0.570 3.430 7 O -0.575 6.575 8 N -0.616 5.616 9 C 0.119 3.881 10 C -0.114 4.114 11 H 0.053 0.947 12 C -0.081 4.081 13 C -0.139 4.139 14 C 0.182 3.818 15 H 0.053 0.947 16 N -0.731 5.731 17 C -0.230 4.230 18 H 0.079 0.921 19 C -0.081 4.081 20 N -0.972 5.972 21 Si 0.968 3.032 22 H -0.263 1.263 23 H -0.296 1.296 24 H -0.300 1.300 25 C -0.122 4.122 26 H 0.107 0.893 27 C 0.138 3.862 28 C 0.345 3.655 29 O -0.489 6.489 30 N -0.534 5.534 31 H 0.094 0.906 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.119 0.881 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.104 0.896 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.370 0.630 43 H 0.247 0.753 44 H 0.034 0.966 45 H 0.063 0.937 46 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.096 13.956 -6.004 28.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.023 3.977 3 C -0.190 4.190 4 C -0.046 4.046 5 C -0.225 4.225 6 C 0.360 3.640 7 O -0.455 6.455 8 N -0.349 5.349 9 C 0.000 4.000 10 C -0.134 4.134 11 H 0.071 0.929 12 C -0.119 4.119 13 C -0.180 4.180 14 C 0.073 3.927 15 H 0.071 0.929 16 N -0.371 5.371 17 C -0.362 4.362 18 H 0.097 0.903 19 C -0.272 4.272 20 N -0.624 5.624 21 Si 0.798 3.202 22 H -0.187 1.187 23 H -0.223 1.223 24 H -0.228 1.228 25 C -0.141 4.141 26 H 0.125 0.875 27 C 0.016 3.984 28 C 0.165 3.835 29 O -0.298 6.298 30 N -0.255 5.255 31 H 0.112 0.888 32 H 0.091 0.909 33 H 0.132 0.868 34 H 0.211 0.789 35 H 0.193 0.807 36 H 0.136 0.864 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.122 0.878 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.202 0.798 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.082 0.918 46 H 0.274 0.726 Dipole moment (debyes) X Y Z Total from point charges -24.071 12.745 -6.956 28.110 hybrid contribution 2.151 -1.055 0.971 2.585 sum -21.920 11.689 -5.985 25.553 Atomic orbital electron populations 1.20965 0.85506 1.05241 1.04603 1.22077 0.98831 0.87055 0.89715 1.22391 0.93658 1.00724 1.02256 1.22229 0.95369 0.96546 0.90424 1.20868 0.92778 0.96078 1.12804 1.18026 0.87005 0.80348 0.78655 1.90823 1.72366 1.36144 1.46192 1.49772 1.06866 1.31116 1.47171 1.22261 0.96074 0.90541 0.91172 1.22625 0.94753 0.99890 0.96103 0.92860 1.21783 0.94539 0.94506 1.01058 1.23659 0.95878 0.99420 0.98997 1.20390 0.92613 0.87736 0.91929 0.92893 1.42637 1.08630 1.13706 1.72142 1.19695 0.88181 0.98240 1.30089 0.90323 1.25519 1.01814 0.96447 1.03464 1.69831 1.36414 1.04761 1.51380 0.85141 0.80643 0.77518 0.76914 1.18683 1.22328 1.22796 1.21937 0.97787 0.96993 0.97407 0.87483 1.20722 0.79675 0.98277 0.99760 1.19310 0.86875 0.84837 0.92436 1.84722 1.76977 1.33133 1.34945 1.67158 1.08596 1.32576 1.17124 0.88751 0.90889 0.86764 0.78914 0.80695 0.86374 0.88931 0.90728 0.87793 0.93979 0.90538 0.79771 0.94404 0.94729 0.91819 0.72614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.16 71.24 0.72 -0.11 16 2 C 0.16 2.54 6.78 42.58 0.29 2.83 16 3 C -0.17 -1.83 9.71 22.32 0.22 -1.62 16 4 C -0.02 -0.31 8.28 22.72 0.19 -0.12 16 5 C -0.22 -5.67 5.50 -19.91 -0.11 -5.78 16 6 C 0.57 19.10 7.42 86.69 0.64 19.74 16 7 O -0.58 -25.41 16.34 12.79 0.21 -25.20 16 8 N -0.62 -17.85 3.42 -818.44 -2.80 -20.65 16 9 C 0.12 2.22 4.88 85.36 0.42 2.64 16 10 C -0.11 -2.79 3.09 -9.95 -0.03 -2.82 16 11 H 0.05 1.76 7.87 -2.39 -0.02 1.74 16 12 C -0.08 -1.60 6.59 31.29 0.21 -1.39 16 13 C -0.14 -4.01 6.74 32.80 0.22 -3.79 16 14 C 0.18 6.50 3.47 44.98 0.16 6.65 16 15 H 0.05 1.91 8.09 -2.39 -0.02 1.89 16 16 N -0.73 -35.67 4.85 -323.02 -1.57 -37.24 16 17 C -0.23 -12.56 9.96 84.03 0.84 -11.72 16 18 H 0.08 4.09 7.83 -2.91 -0.02 4.07 16 19 C -0.08 -4.67 5.50 84.86 0.47 -4.21 16 20 N -0.97 -60.92 13.06 21.65 0.28 -60.64 16 21 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 24 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 25 C -0.12 -3.50 2.29 -11.19 -0.03 -3.52 16 26 H 0.11 2.33 7.93 -2.39 -0.02 2.31 16 27 C 0.14 4.78 6.68 84.78 0.57 5.34 16 28 C 0.34 9.86 7.74 85.13 0.66 10.52 16 29 O -0.49 -15.49 12.21 -70.32 -0.86 -16.35 16 30 N -0.53 -13.19 10.28 -296.06 -3.04 -16.24 16 31 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.11 0.15 8.07 -2.39 -0.02 0.13 16 34 H 0.19 0.22 8.06 -2.91 -0.02 0.20 16 35 H 0.18 1.58 5.80 -2.91 -0.02 1.56 16 36 H 0.12 1.22 7.11 -2.39 -0.02 1.20 16 37 H 0.09 1.47 7.24 -2.39 -0.02 1.45 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.04 1.51 7.98 -2.39 -0.02 1.49 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.37 20.02 6.72 -92.71 -0.62 19.40 16 43 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 44 H 0.03 1.54 7.22 -2.38 -0.02 1.53 16 45 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 46 H 0.41 9.78 9.06 -74.06 -0.67 9.10 16 Total: -1.00 -84.59 371.95 -0.60 -85.19 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.27 Total: 29.60 kcal Atomic # 6 Polarization: 7.22 SS G_CDS: 5.42 Total: 12.64 kcal Atomic # 7 Polarization: -127.64 SS G_CDS: -7.13 Total: -134.76 kcal Atomic # 8 Polarization: -40.90 SS G_CDS: -0.65 Total: -41.55 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -84.59 -0.60 -85.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365595.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.722 kcal (2) G-P(sol) polarization free energy of solvation -84.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds