Wall clock time and date at job start Tue Mar 31 2020 16:07:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38353 * 119.40406 * 2 1 4 4 C 1.38337 * 119.45905 * 180.02562 * 3 2 1 5 5 C 1.39987 * 118.34915 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59797 * 179.97438 * 5 4 3 7 7 O 1.21594 * 119.99627 * 140.93417 * 6 5 4 8 8 N 1.34776 * 119.99919 * 320.93109 * 6 5 4 9 9 C 1.48340 * 128.19239 * 184.48054 * 8 6 5 10 10 C 1.54469 * 104.30150 * 138.19686 * 9 8 6 11 11 H 1.08996 * 111.93034 * 263.68977 * 10 9 8 12 12 C 1.54147 * 108.79648 * 139.51777 * 10 9 8 13 13 C 1.56518 * 103.54764 * 224.56026 * 12 10 9 14 14 C 1.54839 * 103.25603 * 37.29249 * 13 12 10 15 15 H 1.08997 * 110.56671 * 80.97277 * 14 13 12 16 16 N 1.46494 * 110.45742 * 203.49233 * 14 13 12 17 17 C 1.36942 * 119.99738 * 269.92181 * 16 14 13 18 18 H 1.07994 * 120.00179 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00009 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47520 * 89.99615 * 21 19 17 23 23 H 1.48505 * 109.46958 * 209.99883 * 21 19 17 24 24 H 1.48498 * 109.46998 * 329.99486 * 21 19 17 25 25 C 1.54147 * 104.34107 * 322.20378 * 14 13 12 26 26 H 1.09003 * 112.65582 * 260.67347 * 25 14 13 27 27 C 1.48332 * 128.19903 * 4.16129 * 8 6 5 28 28 C 1.40288 * 118.80372 * 359.97438 * 5 4 3 29 29 O 1.35425 * 119.79492 * 179.72724 * 28 5 4 30 30 N 1.31881 * 119.40927 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47505 * 89.99882 * 1 2 3 32 32 H 1.09005 * 109.46972 * 209.99771 * 1 2 3 33 33 H 1.08999 * 109.47841 * 329.99729 * 1 2 3 34 34 H 1.08000 * 120.27501 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.82930 * 179.97438 * 4 3 2 36 36 H 1.08993 * 110.46463 * 256.90017 * 9 8 6 37 37 H 1.08993 * 110.46971 * 19.36646 * 9 8 6 38 38 H 1.09003 * 110.46178 * 342.75339 * 12 10 9 39 39 H 1.09007 * 110.46074 * 105.32490 * 12 10 9 40 40 H 1.09002 * 110.14436 * 278.98033 * 13 12 10 41 41 H 1.09004 * 110.87889 * 155.94721 * 13 12 10 42 42 H 0.97001 * 120.00834 * 89.92386 * 16 14 13 43 43 H 0.96991 * 119.99708 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.46855 * 340.51279 * 27 8 6 45 45 H 1.08994 * 110.46935 * 103.09674 * 27 8 6 46 46 H 0.96695 * 114.00412 * 90.00478 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2053 0.0000 4 6 3.5696 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0016 6 6 5.7097 -0.0812 -0.0028 7 8 6.2863 -0.9218 0.6600 8 7 6.4171 0.7989 -0.7386 9 6 7.8852 0.8509 -0.9448 10 6 8.0485 1.1673 -2.4479 11 1 8.2078 0.2654 -3.0388 12 6 9.1991 2.1784 -2.6205 13 6 8.6243 3.2173 -3.6405 14 6 7.1356 3.3312 -3.2303 15 1 7.0233 4.0024 -2.3789 16 7 6.3278 3.7986 -4.3595 17 6 6.1277 5.1399 -4.5494 18 1 6.5657 5.8532 -3.8670 19 6 5.3618 5.5829 -5.6191 20 7 4.8283 4.7136 -6.4511 21 14 5.0894 7.4126 -5.8785 22 1 6.1658 7.9553 -6.7456 23 1 3.7725 7.6296 -6.5296 24 1 5.1132 8.1075 -4.5663 25 6 6.7360 1.8945 -2.8402 26 1 6.2042 1.3754 -3.6376 27 6 5.9116 1.9408 -1.5390 28 6 3.4757 -1.2040 -0.0016 29 8 4.0992 -2.4062 -0.0082 30 7 2.1546 -1.1489 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3635 0.8899 0.5138 34 1 1.6410 2.1376 -0.0004 35 1 4.1222 2.1346 -0.0010 36 1 8.3274 1.6416 -0.3387 37 1 8.3382 -0.1108 -0.7044 38 1 9.4256 2.6636 -1.6711 39 1 10.0853 1.6831 -3.0173 40 1 8.7168 2.8357 -4.6573 41 1 9.1273 4.1791 -3.5403 42 1 5.9346 3.1581 -4.9727 43 1 4.2935 5.0232 -7.1986 44 1 4.8510 1.8140 -1.7564 45 1 6.0842 2.8803 -1.0141 46 1 4.2844 -2.7581 0.8732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026365596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:53 Heat of formation + Delta-G solvation = -20.185874 kcal Electronic energy + Delta-G solvation = -28717.332316 eV Core-core repulsion = 24800.459308 eV Total energy + Delta-G solvation = -3916.873008 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11242 -39.94450 -38.29256 -37.33294 -35.17743 -33.75308 -33.00534 -31.81627 -31.05474 -29.41893 -28.82059 -27.72415 -25.19679 -24.29798 -23.52709 -22.90623 -22.56222 -20.44767 -19.70801 -19.04999 -18.70666 -17.44533 -17.21878 -16.92333 -16.13343 -15.98195 -15.54050 -15.07536 -14.88245 -14.44991 -14.22085 -14.04051 -13.91230 -13.49214 -13.10527 -13.05541 -12.94554 -12.65016 -12.56477 -12.34718 -12.22256 -11.88077 -11.81558 -11.70431 -11.26750 -10.89475 -10.84230 -10.75333 -10.39800 -10.38290 -10.26981 -10.18944 -10.04394 -9.98926 -9.73307 -9.54723 -9.04818 -8.94702 -8.72936 -7.02133 -5.83328 -3.12541 0.44956 0.90186 2.59288 2.85759 3.26634 3.38326 3.43793 3.45468 3.52530 4.18417 4.38525 4.45360 4.52035 4.65024 4.72217 4.75363 4.92076 5.05594 5.13995 5.25012 5.31674 5.33645 5.39287 5.43228 5.52049 5.60585 5.65296 5.66888 5.72005 5.74712 5.78533 5.87281 5.92460 6.00709 6.06710 6.14067 6.21294 6.26624 6.36300 6.47793 6.61849 6.74566 6.98058 7.30901 7.47624 7.63814 7.65321 8.04585 8.34948 9.46312 10.03427 10.37434 11.39066 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003731 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.763015 B = 7502.718353 C = 9639.352578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.171 3.829 3 C -0.186 4.186 4 C -0.026 4.026 5 C -0.203 4.203 6 C 0.593 3.407 7 O -0.540 6.540 8 N -0.617 5.617 9 C 0.112 3.888 10 C -0.102 4.102 11 H 0.084 0.916 12 C -0.117 4.117 13 C -0.141 4.141 14 C 0.185 3.815 15 H 0.058 0.942 16 N -0.720 5.720 17 C -0.242 4.242 18 H 0.070 0.930 19 C -0.011 4.011 20 N -0.931 5.931 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C -0.107 4.107 26 H 0.089 0.911 27 C 0.100 3.900 28 C 0.369 3.631 29 O -0.470 6.470 30 N -0.508 5.508 31 H 0.085 0.915 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.059 0.941 42 H 0.384 0.616 43 H 0.256 0.744 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.913 -8.305 15.018 17.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.033 3.967 3 C -0.206 4.206 4 C -0.051 4.051 5 C -0.209 4.209 6 C 0.381 3.619 7 O -0.418 6.418 8 N -0.350 5.350 9 C -0.010 4.010 10 C -0.122 4.122 11 H 0.102 0.898 12 C -0.156 4.156 13 C -0.182 4.182 14 C 0.074 3.926 15 H 0.076 0.924 16 N -0.360 5.360 17 C -0.373 4.373 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.579 5.579 21 Si 0.736 3.264 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.208 1.208 25 C -0.127 4.127 26 H 0.107 0.893 27 C -0.022 4.022 28 C 0.188 3.812 29 O -0.278 6.278 30 N -0.227 5.227 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.094 0.906 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.080 0.920 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.099 0.901 45 H 0.099 0.901 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -2.153 -9.397 14.859 17.712 hybrid contribution 0.267 1.510 -0.156 1.541 sum -1.886 -7.887 14.703 16.791 Atomic orbital electron populations 1.20831 0.88061 1.03856 1.03821 1.21269 0.97114 0.87163 0.91117 1.21956 0.94463 0.99768 1.04416 1.21913 0.94643 0.97274 0.91311 1.20952 0.94608 0.94608 1.10746 1.17353 0.85601 0.80056 0.78870 1.90753 1.71335 1.37108 1.42584 1.49096 1.08650 1.29584 1.47631 1.22674 0.79981 1.02334 0.96032 1.22739 0.95826 0.99012 0.94578 0.89793 1.22690 0.96384 0.96484 1.00031 1.23518 0.98716 0.97469 0.98459 1.21096 0.89642 0.90351 0.91474 0.92440 1.42453 1.59298 1.05068 1.29229 1.19230 1.25956 0.83530 1.08587 0.91169 1.24731 1.00515 0.97480 0.97962 1.69655 1.38556 1.32420 1.17310 0.86232 0.77249 0.85207 0.77734 1.21719 1.21792 1.20753 1.23007 0.94795 0.98557 0.96353 0.89251 1.22908 0.99652 0.88198 0.91421 1.18985 0.86165 0.84739 0.91280 1.84658 1.76535 1.32293 1.34335 1.67099 1.09103 1.30484 1.16060 0.89602 0.90157 0.90055 0.83473 0.83348 0.90631 0.90249 0.91730 0.91990 0.91627 0.92174 0.78164 0.93456 0.90057 0.90074 0.73267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.81 10.16 36.00 0.37 -0.44 16 2 C 0.17 1.88 6.78 -82.53 -0.56 1.32 16 3 C -0.19 -1.88 9.71 -39.50 -0.38 -2.27 16 4 C -0.03 -0.29 7.91 -38.89 -0.31 -0.60 16 5 C -0.20 -2.78 5.55 -104.69 -0.58 -3.36 16 6 C 0.59 8.97 7.40 -12.47 -0.09 8.88 16 7 O -0.54 -9.29 16.44 -10.63 -0.17 -9.47 16 8 N -0.62 -8.54 3.31 -170.35 -0.56 -9.10 16 9 C 0.11 1.40 6.57 -2.26 -0.01 1.39 16 10 C -0.10 -1.32 3.89 -88.15 -0.34 -1.67 16 11 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 12 C -0.12 -1.46 6.51 -24.24 -0.16 -1.62 16 13 C -0.14 -2.27 6.60 -23.87 -0.16 -2.43 16 14 C 0.19 3.28 3.08 -66.37 -0.20 3.07 16 15 H 0.06 1.02 7.13 -51.93 -0.37 0.64 16 16 N -0.72 -16.66 5.20 -51.91 -0.27 -16.93 16 17 C -0.24 -6.29 9.96 -15.06 -0.15 -6.44 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 20 N -0.93 -27.07 13.06 55.49 0.72 -26.34 16 21 Si 0.90 21.47 29.55 -169.99 -5.02 16.45 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C -0.11 -1.62 3.61 -88.34 -0.32 -1.93 16 26 H 0.09 1.50 7.83 -51.93 -0.41 1.09 16 27 C 0.10 1.36 5.01 -2.46 -0.01 1.35 16 28 C 0.37 5.19 7.74 -16.61 -0.13 5.06 16 29 O -0.47 -6.43 12.33 -33.88 -0.42 -6.84 16 30 N -0.51 -6.81 10.28 -9.21 -0.09 -6.90 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 34 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 35 H 0.15 1.49 6.34 -52.49 -0.33 1.16 16 36 H 0.08 0.85 7.21 -51.93 -0.37 0.48 16 37 H 0.08 1.02 7.91 -51.93 -0.41 0.61 16 38 H 0.06 0.73 7.19 -51.93 -0.37 0.35 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.38 9.63 7.63 -40.82 -0.31 9.31 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.08 1.12 5.76 -51.93 -0.30 0.82 16 45 H 0.08 1.02 7.19 -51.93 -0.37 0.65 16 46 H 0.41 3.88 9.06 45.56 0.41 4.30 16 LS Contribution 371.85 15.07 5.60 5.60 Total: -1.00 -32.75 371.85 -9.12 -41.87 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: -5.76 Total: 11.74 kcal Atomic # 6 Polarization: 3.07 SS G_CDS: -3.14 Total: -0.08 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.20 Total: -59.28 kcal Atomic # 8 Polarization: -15.72 SS G_CDS: -0.59 Total: -16.31 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.75 -9.12 -41.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.689 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.875 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds