Wall clock time and date at job start Tue Mar 31 2020 16:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38353 * 119.40406 * 2 1 4 4 C 1.38337 * 119.45905 * 180.02562 * 3 2 1 5 5 C 1.39987 * 118.34915 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59797 * 179.97438 * 5 4 3 7 7 O 1.21594 * 119.99627 * 140.93417 * 6 5 4 8 8 N 1.34776 * 119.99919 * 320.93109 * 6 5 4 9 9 C 1.48340 * 128.19239 * 184.48054 * 8 6 5 10 10 C 1.54469 * 104.30150 * 138.19686 * 9 8 6 11 11 H 1.08996 * 111.93034 * 263.68977 * 10 9 8 12 12 C 1.54147 * 108.79648 * 139.51777 * 10 9 8 13 13 C 1.56518 * 103.54764 * 224.56026 * 12 10 9 14 14 C 1.54839 * 103.25603 * 37.29249 * 13 12 10 15 15 H 1.08997 * 110.56671 * 80.97277 * 14 13 12 16 16 N 1.46494 * 110.45742 * 203.49233 * 14 13 12 17 17 C 1.36942 * 119.99738 * 269.92181 * 16 14 13 18 18 H 1.07994 * 120.00179 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00009 * 180.02562 * 17 16 14 20 20 N 1.31619 * 119.99973 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 119.99906 * 180.02562 * 19 17 16 22 22 H 1.48496 * 109.47520 * 89.99615 * 21 19 17 23 23 H 1.48505 * 109.46958 * 209.99883 * 21 19 17 24 24 H 1.48498 * 109.46998 * 329.99486 * 21 19 17 25 25 C 1.54147 * 104.34107 * 322.20378 * 14 13 12 26 26 H 1.09003 * 112.65582 * 260.67347 * 25 14 13 27 27 C 1.48332 * 128.19903 * 4.16129 * 8 6 5 28 28 C 1.40288 * 118.80372 * 359.97438 * 5 4 3 29 29 O 1.35425 * 119.79492 * 179.72724 * 28 5 4 30 30 N 1.31881 * 119.40927 * 180.02562 * 2 1 3 31 31 H 1.09003 * 109.47505 * 89.99882 * 1 2 3 32 32 H 1.09005 * 109.46972 * 209.99771 * 1 2 3 33 33 H 1.08999 * 109.47841 * 329.99729 * 1 2 3 34 34 H 1.08000 * 120.27501 * 359.97438 * 3 2 1 35 35 H 1.08002 * 120.82930 * 179.97438 * 4 3 2 36 36 H 1.08993 * 110.46463 * 256.90017 * 9 8 6 37 37 H 1.08993 * 110.46971 * 19.36646 * 9 8 6 38 38 H 1.09003 * 110.46178 * 342.75339 * 12 10 9 39 39 H 1.09007 * 110.46074 * 105.32490 * 12 10 9 40 40 H 1.09002 * 110.14436 * 278.98033 * 13 12 10 41 41 H 1.09004 * 110.87889 * 155.94721 * 13 12 10 42 42 H 0.97001 * 120.00834 * 89.92386 * 16 14 13 43 43 H 0.96991 * 119.99708 * 180.02562 * 20 19 17 44 44 H 1.09002 * 110.46855 * 340.51279 * 27 8 6 45 45 H 1.08994 * 110.46935 * 103.09674 * 27 8 6 46 46 H 0.96695 * 114.00412 * 90.00478 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1862 1.2053 0.0000 4 6 3.5696 1.2066 -0.0005 5 6 4.2355 -0.0247 -0.0016 6 6 5.7097 -0.0812 -0.0028 7 8 6.2863 -0.9218 0.6600 8 7 6.4171 0.7989 -0.7386 9 6 7.8852 0.8509 -0.9448 10 6 8.0485 1.1673 -2.4479 11 1 8.2078 0.2654 -3.0388 12 6 9.1991 2.1784 -2.6205 13 6 8.6243 3.2173 -3.6405 14 6 7.1356 3.3312 -3.2303 15 1 7.0233 4.0024 -2.3789 16 7 6.3278 3.7986 -4.3595 17 6 6.1277 5.1399 -4.5494 18 1 6.5657 5.8532 -3.8670 19 6 5.3618 5.5829 -5.6191 20 7 4.8283 4.7136 -6.4511 21 14 5.0894 7.4126 -5.8785 22 1 6.1658 7.9553 -6.7456 23 1 3.7725 7.6296 -6.5296 24 1 5.1132 8.1075 -4.5663 25 6 6.7360 1.8945 -2.8402 26 1 6.2042 1.3754 -3.6376 27 6 5.9116 1.9408 -1.5390 28 6 3.4757 -1.2040 -0.0016 29 8 4.0992 -2.4062 -0.0082 30 7 2.1546 -1.1489 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3635 0.8899 0.5138 34 1 1.6410 2.1376 -0.0004 35 1 4.1222 2.1346 -0.0010 36 1 8.3274 1.6416 -0.3387 37 1 8.3382 -0.1108 -0.7044 38 1 9.4256 2.6636 -1.6711 39 1 10.0853 1.6831 -3.0173 40 1 8.7168 2.8357 -4.6573 41 1 9.1273 4.1791 -3.5403 42 1 5.9346 3.1581 -4.9727 43 1 4.2935 5.0232 -7.1986 44 1 4.8510 1.8140 -1.7564 45 1 6.0842 2.8803 -1.0141 46 1 4.2844 -2.7581 0.8732 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026365596.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:52 Heat of formation + Delta-G solvation = -43.762992 kcal Electronic energy + Delta-G solvation = -28718.354696 eV Core-core repulsion = 24800.459308 eV Total energy + Delta-G solvation = -3917.895388 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.10837 -41.03700 -39.46520 -38.31675 -36.61910 -35.14533 -34.13612 -32.67584 -32.66418 -30.65321 -30.06971 -28.67956 -26.70824 -25.37225 -24.73132 -24.28770 -23.49486 -21.68529 -20.80896 -20.33541 -19.67818 -19.04738 -18.47318 -17.95722 -17.35542 -16.96262 -16.83013 -16.35881 -15.97401 -15.73768 -15.44796 -15.21136 -14.91692 -14.76286 -14.58859 -14.22734 -13.88097 -13.78979 -13.52117 -13.26162 -13.14985 -13.10829 -12.97807 -12.88694 -12.72034 -12.59283 -12.34991 -12.07974 -11.96173 -11.65836 -11.58922 -11.48738 -11.37509 -11.28921 -10.99157 -10.84727 -10.53466 -10.01071 -9.78189 -8.93269 -7.89217 -5.16780 -0.47887 0.01052 1.49814 1.51328 1.52362 1.60163 1.80644 2.37086 2.60036 2.60528 3.16394 3.40308 3.48584 3.56183 3.61750 3.68564 3.74862 3.90950 4.08210 4.16553 4.26232 4.32018 4.37306 4.42045 4.51218 4.61628 4.63612 4.64357 4.68940 4.78211 4.78230 4.87008 4.87681 4.96872 5.01563 5.08829 5.10081 5.15044 5.25799 5.41733 5.45940 5.46901 5.55248 5.64348 6.32824 6.35596 6.43121 6.75498 6.91810 7.39240 8.16174 8.37829 9.34417 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.010529 B = 0.003731 C = 0.002904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2658.763015 B = 7502.718353 C = 9639.352578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.164 3.836 3 C -0.180 4.180 4 C -0.027 4.027 5 C -0.222 4.222 6 C 0.590 3.410 7 O -0.568 6.568 8 N -0.616 5.616 9 C 0.113 3.887 10 C -0.095 4.095 11 H 0.082 0.918 12 C -0.101 4.101 13 C -0.139 4.139 14 C 0.181 3.819 15 H 0.066 0.934 16 N -0.733 5.733 17 C -0.232 4.232 18 H 0.079 0.921 19 C -0.074 4.074 20 N -0.971 5.971 21 Si 0.965 3.035 22 H -0.293 1.293 23 H -0.300 1.300 24 H -0.266 1.266 25 C -0.104 4.104 26 H 0.066 0.934 27 C 0.107 3.893 28 C 0.351 3.649 29 O -0.486 6.486 30 N -0.529 5.529 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.109 0.891 34 H 0.181 0.819 35 H 0.163 0.837 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.043 0.957 41 H 0.057 0.943 42 H 0.370 0.630 43 H 0.248 0.752 44 H 0.078 0.922 45 H 0.099 0.901 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.753 -6.927 16.736 18.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.027 3.973 3 C -0.200 4.200 4 C -0.053 4.053 5 C -0.229 4.229 6 C 0.379 3.621 7 O -0.448 6.448 8 N -0.347 5.347 9 C -0.009 4.009 10 C -0.114 4.114 11 H 0.101 0.899 12 C -0.139 4.139 13 C -0.180 4.180 14 C 0.072 3.928 15 H 0.084 0.916 16 N -0.372 5.372 17 C -0.364 4.364 18 H 0.097 0.903 19 C -0.266 4.266 20 N -0.623 5.623 21 Si 0.795 3.205 22 H -0.220 1.220 23 H -0.227 1.227 24 H -0.190 1.190 25 C -0.124 4.124 26 H 0.085 0.915 27 C -0.015 4.015 28 C 0.171 3.829 29 O -0.296 6.296 30 N -0.250 5.250 31 H 0.110 0.890 32 H 0.099 0.901 33 H 0.128 0.872 34 H 0.198 0.802 35 H 0.180 0.820 36 H 0.116 0.884 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.076 0.924 42 H 0.202 0.798 43 H 0.057 0.943 44 H 0.096 0.904 45 H 0.117 0.883 46 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -1.949 -8.013 16.630 18.562 hybrid contribution 0.216 1.045 -0.657 1.254 sum -1.734 -6.968 15.972 17.512 Atomic orbital electron populations 1.20959 0.85552 1.05303 1.04548 1.21953 0.98791 0.86861 0.89738 1.22345 0.94029 1.00831 1.02750 1.22139 0.95453 0.96890 0.90774 1.20934 0.93913 0.95479 1.12544 1.17597 0.86239 0.79677 0.78571 1.90724 1.72025 1.38171 1.43891 1.49107 1.09240 1.29306 1.47090 1.22782 0.79368 1.03078 0.95652 1.22684 0.94826 0.98921 0.95014 0.89912 1.22624 0.96362 0.95077 0.99886 1.23369 0.97609 0.98550 0.98438 1.21336 0.89863 0.91708 0.89926 0.91628 1.42656 1.60070 1.03993 1.30463 1.19633 1.24062 0.84956 1.07752 0.90262 1.25459 1.01536 1.01151 0.98465 1.69813 1.40232 1.34086 1.18123 0.85254 0.76293 0.80966 0.77963 1.22046 1.22711 1.19031 1.22836 0.96166 0.96931 0.96511 0.91542 1.22860 0.99173 0.88775 0.90679 1.19170 0.86684 0.84879 0.92144 1.84606 1.76739 1.32620 1.35677 1.67156 1.08853 1.31944 1.17021 0.89015 0.90146 0.87229 0.80186 0.81974 0.88441 0.90438 0.89445 0.90242 0.93836 0.92373 0.79781 0.94293 0.90395 0.88335 0.71897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.16 71.23 0.72 -0.62 16 2 C 0.16 3.35 6.78 42.58 0.29 3.64 16 3 C -0.18 -3.24 9.71 22.32 0.22 -3.02 16 4 C -0.03 -0.58 7.91 22.72 0.18 -0.40 16 5 C -0.22 -6.02 5.55 -19.91 -0.11 -6.13 16 6 C 0.59 17.59 7.40 86.69 0.64 18.23 16 7 O -0.57 -19.55 16.44 11.20 0.18 -19.37 16 8 N -0.62 -16.17 3.31 -811.13 -2.69 -18.86 16 9 C 0.11 2.57 6.57 86.52 0.57 3.13 16 10 C -0.09 -2.28 3.89 -9.19 -0.04 -2.32 16 11 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 12 C -0.10 -2.22 6.51 32.21 0.21 -2.01 16 13 C -0.14 -4.28 6.60 32.45 0.21 -4.06 16 14 C 0.18 6.17 3.08 46.01 0.14 6.31 16 15 H 0.07 2.15 7.13 -2.39 -0.02 2.14 16 16 N -0.73 -33.91 5.20 -318.15 -1.65 -35.56 16 17 C -0.23 -11.94 9.96 84.03 0.84 -11.10 16 18 H 0.08 3.86 7.83 -2.91 -0.02 3.84 16 19 C -0.07 -4.04 5.50 84.86 0.47 -3.58 16 20 N -0.97 -57.54 13.06 21.65 0.28 -57.26 16 21 Si 0.97 44.06 29.55 68.60 2.03 46.08 16 22 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 23 H -0.30 -13.99 7.11 99.48 0.71 -13.29 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 25 C -0.10 -3.05 3.61 -9.32 -0.03 -3.09 16 26 H 0.07 2.27 7.83 -2.39 -0.02 2.26 16 27 C 0.11 2.73 5.01 86.40 0.43 3.16 16 28 C 0.35 10.01 7.74 85.13 0.66 10.67 16 29 O -0.49 -13.75 12.33 -71.99 -0.89 -14.64 16 30 N -0.53 -14.06 10.28 -296.07 -3.04 -17.11 16 31 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 33 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 34 H 0.18 1.97 8.06 -2.91 -0.02 1.94 16 35 H 0.16 2.91 6.34 -2.91 -0.02 2.89 16 36 H 0.10 1.83 7.21 -2.39 -0.02 1.81 16 37 H 0.08 1.84 7.91 -2.39 -0.02 1.82 16 38 H 0.09 1.58 7.19 -2.39 -0.02 1.56 16 39 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.37 19.01 7.63 -92.71 -0.71 18.30 16 43 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16 44 H 0.08 2.06 5.76 -2.39 -0.01 2.04 16 45 H 0.10 2.20 7.19 -2.39 -0.02 2.18 16 46 H 0.42 8.50 9.06 -74.06 -0.67 7.83 16 Total: -1.00 -71.76 371.85 -0.73 -72.49 By element: Atomic # 1 Polarization: 35.76 SS G_CDS: -0.35 Total: 35.41 kcal Atomic # 6 Polarization: 3.41 SS G_CDS: 5.40 Total: 8.81 kcal Atomic # 7 Polarization: -121.69 SS G_CDS: -7.10 Total: -128.79 kcal Atomic # 8 Polarization: -33.30 SS G_CDS: -0.70 Total: -34.01 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.08 kcal Total: -71.76 -0.73 -72.49 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365596.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.730 kcal (2) G-P(sol) polarization free energy of solvation -71.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds