Wall clock time and date at job start Tue Mar 31 2020 16:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.40964 * 2 1 4 4 C 1.38335 * 119.46250 * 180.02562 * 3 2 1 5 5 C 1.39989 * 118.34557 * 359.97438 * 4 3 2 6 6 C 1.47522 * 120.59500 * 180.02562 * 5 4 3 7 7 O 1.21597 * 120.00232 * 221.43674 * 6 5 4 8 8 N 1.34779 * 120.00158 * 41.43768 * 6 5 4 9 9 C 1.49215 * 126.05379 * 355.16467 * 8 6 5 10 10 C 1.50352 * 104.85946 * 172.91410 * 9 8 6 11 11 H 1.08997 * 109.74125 * 279.05422 * 10 9 8 12 12 C 1.51012 * 125.54149 * 144.29743 * 10 9 8 13 13 C 1.56399 * 101.59382 * 204.00011 * 12 10 9 14 14 C 1.55942 * 105.79027 * 25.02234 * 13 12 10 15 15 H 1.08991 * 110.49412 * 248.86655 * 14 13 12 16 16 N 1.46506 * 110.60619 * 126.26176 * 14 13 12 17 17 C 1.36931 * 119.99957 * 90.19727 * 16 14 13 18 18 H 1.08002 * 119.99823 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00023 * 179.97438 * 17 16 14 20 20 N 1.31611 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46953 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47280 * 120.00051 * 21 19 17 24 24 H 1.48498 * 109.47565 * 240.00401 * 21 19 17 25 25 C 1.50293 * 104.15474 * 7.54034 * 14 13 12 26 26 H 1.09003 * 109.99072 * 80.47381 * 25 14 13 27 27 C 1.49696 * 126.06183 * 175.14191 * 8 6 5 28 28 C 1.40286 * 118.80799 * 0.27943 * 5 4 3 29 29 O 1.35425 * 119.80016 * 179.70650 * 28 5 4 30 30 N 1.31881 * 119.40603 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47174 * 89.99958 * 1 2 3 32 32 H 1.08994 * 109.46991 * 209.99581 * 1 2 3 33 33 H 1.08994 * 109.47350 * 330.00173 * 1 2 3 34 34 H 1.08007 * 120.26579 * 0.02562 * 3 2 1 35 35 H 1.07994 * 120.82720 * 180.02562 * 4 3 2 36 36 H 1.08995 * 110.36384 * 54.07236 * 9 8 6 37 37 H 1.08999 * 110.36527 * 291.75829 * 9 8 6 38 38 H 1.08993 * 111.00086 * 322.08183 * 12 10 9 39 39 H 1.08997 * 111.00012 * 85.92332 * 12 10 9 40 40 H 1.09003 * 110.18125 * 144.10094 * 13 12 10 41 41 H 1.08993 * 110.18845 * 265.93831 * 13 12 10 42 42 H 0.97006 * 119.99693 * 270.19851 * 16 14 13 43 43 H 0.97001 * 120.00283 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.84388 * 36.68669 * 27 8 6 45 45 H 1.08996 * 110.84350 * 273.07755 * 27 8 6 46 46 H 0.96694 * 114.00284 * 89.99374 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2870 -0.8936 -0.6974 8 7 6.4166 0.7672 0.7719 9 6 5.8569 1.8775 1.5968 10 6 7.0243 2.3943 2.3908 11 1 7.1934 1.7537 3.2564 12 6 7.2637 3.8387 2.7610 13 6 8.8130 3.8559 2.9743 14 6 9.3725 2.6793 2.1173 15 1 9.7551 1.8869 2.7605 16 7 10.4215 3.1544 1.2116 17 6 11.7288 3.1551 1.6188 18 1 11.9867 2.8050 2.6074 19 6 12.7229 3.6048 0.7604 20 7 12.4086 4.0309 -0.4445 21 14 14.5064 3.6050 1.3155 22 1 14.5933 3.0809 2.7023 23 1 15.3069 2.7424 0.4098 24 1 15.0371 4.9914 1.2758 25 6 8.1829 2.1952 1.3367 26 1 8.0152 2.8406 0.4744 27 6 7.9024 0.7625 0.9548 28 6 3.4757 -1.2041 -0.0059 29 8 4.0991 -2.4064 -0.0121 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3634 0.8899 0.5138 34 1 1.6411 2.1376 0.0004 35 1 4.1223 2.1344 -0.0001 36 1 5.0816 1.5008 2.2639 37 1 5.4575 2.6627 0.9550 38 1 6.9739 4.5036 1.9474 39 1 6.7398 4.0981 3.6809 40 1 9.2294 4.8028 2.6307 41 1 9.0495 3.7002 4.0269 42 1 10.1898 3.4685 0.3236 43 1 13.1031 4.3455 -1.0442 44 1 8.4069 0.5032 0.0240 45 1 8.1923 0.0835 1.7566 46 1 4.2806 -2.7598 0.8695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026365597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:57 Heat of formation + Delta-G solvation = -2.696587 kcal Electronic energy + Delta-G solvation = -28355.795787 eV Core-core repulsion = 24439.681172 eV Total energy + Delta-G solvation = -3916.114615 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.24018 -40.27120 -38.44004 -37.47754 -35.38781 -33.66373 -33.23347 -31.95970 -30.97220 -29.78204 -28.62942 -27.95473 -25.55301 -24.00278 -23.62085 -23.08773 -22.45911 -20.30765 -19.96149 -19.19615 -18.84823 -17.43337 -17.23992 -16.98680 -16.48135 -16.00912 -15.30820 -15.05529 -14.87695 -14.64089 -14.30202 -14.11453 -13.87006 -13.74930 -13.50246 -13.15509 -12.93082 -12.71450 -12.66039 -12.45018 -12.20163 -11.94490 -11.92472 -11.62051 -11.48348 -11.11326 -10.84079 -10.81044 -10.53055 -10.30568 -10.21018 -10.17028 -10.13106 -9.83626 -9.68052 -9.57547 -9.15240 -8.95371 -8.68457 -7.00837 -5.80280 -3.09668 0.34423 0.75785 2.59585 2.72387 3.13085 3.39261 3.41364 3.47123 3.49390 3.98007 4.15577 4.24814 4.39862 4.54906 4.58900 4.77382 4.86503 4.95860 5.06898 5.13581 5.16505 5.19298 5.27592 5.35035 5.49653 5.52056 5.53951 5.58601 5.62786 5.66208 5.79667 5.87552 5.92364 5.97230 6.04762 6.07867 6.15587 6.27719 6.29573 6.44765 6.57228 6.73254 7.00034 7.18926 7.40935 7.52393 7.67884 8.08014 8.37708 9.49260 10.05494 10.39713 11.42150 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002552 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.245666 B =10968.179911 C =11624.403584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.188 4.188 4 C -0.030 4.030 5 C -0.197 4.197 6 C 0.576 3.424 7 O -0.516 6.516 8 N -0.621 5.621 9 C 0.119 3.881 10 C -0.130 4.130 11 H 0.082 0.918 12 C -0.096 4.096 13 C -0.144 4.144 14 C 0.196 3.804 15 H 0.057 0.943 16 N -0.720 5.720 17 C -0.241 4.241 18 H 0.071 0.929 19 C -0.012 4.012 20 N -0.931 5.931 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.292 1.292 25 C -0.117 4.117 26 H 0.082 0.918 27 C 0.130 3.870 28 C 0.366 3.634 29 O -0.463 6.463 30 N -0.507 5.507 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.145 0.855 35 H 0.149 0.851 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.055 0.945 42 H 0.384 0.616 43 H 0.255 0.745 44 H 0.086 0.914 45 H 0.072 0.928 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.937 -3.823 6.445 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.208 4.208 4 C -0.056 4.056 5 C -0.203 4.203 6 C 0.363 3.637 7 O -0.391 6.391 8 N -0.356 5.356 9 C -0.003 4.003 10 C -0.150 4.150 11 H 0.101 0.899 12 C -0.135 4.135 13 C -0.185 4.185 14 C 0.085 3.915 15 H 0.075 0.925 16 N -0.360 5.360 17 C -0.372 4.372 18 H 0.089 0.911 19 C -0.209 4.209 20 N -0.579 5.579 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.219 1.219 24 H -0.219 1.219 25 C -0.138 4.138 26 H 0.100 0.900 27 C 0.009 3.991 28 C 0.186 3.814 29 O -0.270 6.270 30 N -0.227 5.227 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.079 0.921 40 H 0.093 0.907 41 H 0.074 0.926 42 H 0.218 0.782 43 H 0.065 0.935 44 H 0.104 0.896 45 H 0.090 0.910 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -24.900 -5.133 5.482 26.008 hybrid contribution 1.461 0.879 0.397 1.751 sum -23.439 -4.254 5.879 24.536 Atomic orbital electron populations 1.20819 0.88122 1.03934 1.03642 1.21260 0.97067 0.87207 0.91483 1.21920 0.94429 0.99604 1.04858 1.21938 0.94479 0.97425 0.91728 1.21034 0.94949 0.94524 1.09814 1.17476 0.85651 0.80762 0.79803 1.90865 1.70891 1.37213 1.40160 1.49789 1.08405 1.31733 1.45674 1.21430 0.96302 0.89110 0.93456 1.22191 0.95150 0.98989 0.98648 0.89942 1.21742 0.97699 0.93358 1.00682 1.23808 0.92516 1.02021 1.00115 1.20084 0.86849 0.93495 0.91079 0.92539 1.42499 1.02314 1.76200 1.14973 1.19281 0.83466 1.35802 0.98652 0.91069 1.24753 0.98053 1.01850 0.96205 1.69663 1.32127 1.49000 1.07144 0.86139 0.85326 0.77174 0.77665 1.20539 1.21857 1.21896 1.22536 0.97056 0.95553 0.98617 0.89989 1.21548 0.78117 0.97001 1.02396 1.19053 0.86139 0.84798 0.91377 1.84803 1.76504 1.32164 1.33516 1.67108 1.09189 1.30479 1.15915 0.89805 0.90100 0.90091 0.83678 0.83346 0.91188 0.91208 0.91581 0.92130 0.90712 0.92617 0.78152 0.93508 0.89591 0.90958 0.73968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.16 36.00 0.37 -0.20 16 2 C 0.17 1.48 6.78 -82.53 -0.56 0.92 16 3 C -0.19 -1.41 9.71 -39.50 -0.38 -1.80 16 4 C -0.03 -0.28 8.57 -38.89 -0.33 -0.61 16 5 C -0.20 -2.43 5.56 -104.69 -0.58 -3.01 16 6 C 0.58 8.67 7.32 -12.47 -0.09 8.58 16 7 O -0.52 -9.92 16.53 -9.63 -0.16 -10.08 16 8 N -0.62 -8.32 3.43 -172.80 -0.59 -8.91 16 9 C 0.12 1.21 5.18 -3.86 -0.02 1.19 16 10 C -0.13 -1.49 2.77 -90.26 -0.25 -1.74 16 11 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 12 C -0.10 -1.13 6.72 -25.90 -0.17 -1.30 16 13 C -0.14 -2.23 6.74 -23.33 -0.16 -2.39 16 14 C 0.20 3.55 3.41 -67.70 -0.23 3.32 16 15 H 0.06 1.05 8.09 -51.93 -0.42 0.63 16 16 N -0.72 -17.12 5.11 -53.21 -0.27 -17.39 16 17 C -0.24 -6.45 9.96 -15.06 -0.15 -6.60 16 18 H 0.07 1.86 7.83 -52.49 -0.41 1.44 16 19 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 20 N -0.93 -27.73 13.06 55.49 0.72 -27.01 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C -0.12 -1.78 2.41 -90.34 -0.22 -2.00 16 26 H 0.08 1.36 7.92 -51.93 -0.41 0.95 16 27 C 0.13 1.97 6.83 -3.32 -0.02 1.95 16 28 C 0.37 4.67 7.74 -16.61 -0.13 4.54 16 29 O -0.46 -5.93 12.39 -32.88 -0.41 -6.34 16 30 N -0.51 -5.94 10.28 -9.21 -0.09 -6.04 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.08 0.24 8.07 -51.93 -0.42 -0.18 16 34 H 0.15 0.62 8.06 -52.48 -0.42 0.20 16 35 H 0.15 1.13 5.60 -52.49 -0.29 0.84 16 36 H 0.07 0.60 7.98 -51.93 -0.41 0.18 16 37 H 0.07 0.62 6.30 -51.93 -0.33 0.29 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 1.34 7.98 -51.93 -0.41 0.93 16 41 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.38 9.86 7.68 -40.82 -0.31 9.54 16 43 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.09 1.51 8.06 -51.93 -0.42 1.09 16 45 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.40 3.14 9.06 45.56 0.41 3.55 16 LS Contribution 374.94 15.07 5.65 5.65 Total: -1.00 -34.75 374.94 -9.15 -43.90 By element: Atomic # 1 Polarization: 14.70 SS G_CDS: -5.95 Total: 8.75 kcal Atomic # 6 Polarization: 3.42 SS G_CDS: -3.03 Total: 0.39 kcal Atomic # 7 Polarization: -59.11 SS G_CDS: -0.23 Total: -59.35 kcal Atomic # 8 Polarization: -15.85 SS G_CDS: -0.57 Total: -16.42 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.75 -9.15 -43.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.206 kcal (2) G-P(sol) polarization free energy of solvation -34.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds