Wall clock time and date at job start Tue Mar 31 2020 16:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38359 * 119.40964 * 2 1 4 4 C 1.38335 * 119.46250 * 180.02562 * 3 2 1 5 5 C 1.39989 * 118.34557 * 359.97438 * 4 3 2 6 6 C 1.47522 * 120.59500 * 180.02562 * 5 4 3 7 7 O 1.21597 * 120.00232 * 221.43674 * 6 5 4 8 8 N 1.34779 * 120.00158 * 41.43768 * 6 5 4 9 9 C 1.49215 * 126.05379 * 355.16467 * 8 6 5 10 10 C 1.50352 * 104.85946 * 172.91410 * 9 8 6 11 11 H 1.08997 * 109.74125 * 279.05422 * 10 9 8 12 12 C 1.51012 * 125.54149 * 144.29743 * 10 9 8 13 13 C 1.56399 * 101.59382 * 204.00011 * 12 10 9 14 14 C 1.55942 * 105.79027 * 25.02234 * 13 12 10 15 15 H 1.08991 * 110.49412 * 248.86655 * 14 13 12 16 16 N 1.46506 * 110.60619 * 126.26176 * 14 13 12 17 17 C 1.36931 * 119.99957 * 90.19727 * 16 14 13 18 18 H 1.08002 * 119.99823 * 0.02562 * 17 16 14 19 19 C 1.38816 * 120.00023 * 179.97438 * 17 16 14 20 20 N 1.31611 * 119.99902 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00078 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46953 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47280 * 120.00051 * 21 19 17 24 24 H 1.48498 * 109.47565 * 240.00401 * 21 19 17 25 25 C 1.50293 * 104.15474 * 7.54034 * 14 13 12 26 26 H 1.09003 * 109.99072 * 80.47381 * 25 14 13 27 27 C 1.49696 * 126.06183 * 175.14191 * 8 6 5 28 28 C 1.40286 * 118.80799 * 0.27943 * 5 4 3 29 29 O 1.35425 * 119.80016 * 179.70650 * 28 5 4 30 30 N 1.31881 * 119.40603 * 180.02562 * 2 1 3 31 31 H 1.09007 * 109.47174 * 89.99958 * 1 2 3 32 32 H 1.08994 * 109.46991 * 209.99581 * 1 2 3 33 33 H 1.08994 * 109.47350 * 330.00173 * 1 2 3 34 34 H 1.08007 * 120.26579 * 0.02562 * 3 2 1 35 35 H 1.07994 * 120.82720 * 180.02562 * 4 3 2 36 36 H 1.08995 * 110.36384 * 54.07236 * 9 8 6 37 37 H 1.08999 * 110.36527 * 291.75829 * 9 8 6 38 38 H 1.08993 * 111.00086 * 322.08183 * 12 10 9 39 39 H 1.08997 * 111.00012 * 85.92332 * 12 10 9 40 40 H 1.09003 * 110.18125 * 144.10094 * 13 12 10 41 41 H 1.08993 * 110.18845 * 265.93831 * 13 12 10 42 42 H 0.97006 * 119.99693 * 270.19851 * 16 14 13 43 43 H 0.97001 * 120.00283 * 179.97438 * 20 19 17 44 44 H 1.09002 * 110.84388 * 36.68669 * 27 8 6 45 45 H 1.08996 * 110.84350 * 273.07755 * 27 8 6 46 46 H 0.96694 * 114.00284 * 89.99374 * 29 28 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2066 -0.0005 5 6 4.2355 -0.0249 -0.0005 6 6 5.7097 -0.0814 -0.0005 7 8 6.2870 -0.8936 -0.6974 8 7 6.4166 0.7672 0.7719 9 6 5.8569 1.8775 1.5968 10 6 7.0243 2.3943 2.3908 11 1 7.1934 1.7537 3.2564 12 6 7.2637 3.8387 2.7610 13 6 8.8130 3.8559 2.9743 14 6 9.3725 2.6793 2.1173 15 1 9.7551 1.8869 2.7605 16 7 10.4215 3.1544 1.2116 17 6 11.7288 3.1551 1.6188 18 1 11.9867 2.8050 2.6074 19 6 12.7229 3.6048 0.7604 20 7 12.4086 4.0309 -0.4445 21 14 14.5064 3.6050 1.3155 22 1 14.5933 3.0809 2.7023 23 1 15.3069 2.7424 0.4098 24 1 15.0371 4.9914 1.2758 25 6 8.1829 2.1952 1.3367 26 1 8.0152 2.8406 0.4744 27 6 7.9024 0.7625 0.9548 28 6 3.4757 -1.2041 -0.0059 29 8 4.0991 -2.4064 -0.0121 30 7 2.1545 -1.1489 -0.0005 31 1 -0.3634 0.0000 -1.0277 32 1 -0.3633 -0.8900 0.5137 33 1 -0.3634 0.8899 0.5138 34 1 1.6411 2.1376 0.0004 35 1 4.1223 2.1344 -0.0001 36 1 5.0816 1.5008 2.2639 37 1 5.4575 2.6627 0.9550 38 1 6.9739 4.5036 1.9474 39 1 6.7398 4.0981 3.6809 40 1 9.2294 4.8028 2.6307 41 1 9.0495 3.7002 4.0269 42 1 10.1898 3.4685 0.3236 43 1 13.1031 4.3455 -1.0442 44 1 8.4069 0.5032 0.0240 45 1 8.1923 0.0835 1.7566 46 1 4.2806 -2.7598 0.8695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026365597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:56 Heat of formation + Delta-G solvation = -29.344549 kcal Electronic energy + Delta-G solvation = -28356.951329 eV Core-core repulsion = 24439.681172 eV Total energy + Delta-G solvation = -3917.270158 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.16471 -41.28300 -39.59676 -38.33672 -36.81556 -35.17326 -34.17860 -32.69157 -32.63132 -30.90813 -29.92954 -28.68831 -27.05307 -24.99380 -24.90091 -24.30997 -23.39147 -21.44017 -20.97807 -20.48410 -19.68986 -19.15649 -18.26824 -18.07298 -17.62636 -16.87760 -16.59965 -16.26230 -16.05968 -15.72747 -15.38785 -15.36334 -14.99013 -14.78271 -14.58173 -14.44243 -13.93203 -13.74110 -13.49382 -13.21462 -13.15933 -13.11417 -13.01612 -12.94443 -12.69184 -12.62524 -12.46303 -12.21570 -12.09090 -11.79236 -11.59526 -11.36494 -11.31361 -11.03848 -10.96789 -10.88797 -10.51219 -9.96249 -9.72774 -8.98766 -7.94089 -5.21786 -0.43236 0.05603 1.46346 1.47482 1.54019 1.56849 1.68903 2.39253 2.56210 2.61800 2.92301 3.31403 3.40484 3.61244 3.63814 3.70006 3.87848 3.94786 4.04439 4.19987 4.26273 4.27943 4.38691 4.44125 4.51500 4.55021 4.63943 4.68096 4.72507 4.77103 4.82503 4.90198 4.91923 4.96358 5.00658 5.07397 5.15175 5.17635 5.24823 5.38040 5.49346 5.51354 5.53621 5.65149 6.28532 6.32874 6.47659 6.79721 6.96042 7.34235 8.11558 8.32817 9.29700 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022680 B = 0.002552 C = 0.002408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.245666 B =10968.179911 C =11624.403584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.171 4.171 4 C -0.026 4.026 5 C -0.216 4.216 6 C 0.575 3.425 7 O -0.574 6.574 8 N -0.616 5.616 9 C 0.119 3.881 10 C -0.105 4.105 11 H 0.092 0.908 12 C -0.082 4.082 13 C -0.138 4.138 14 C 0.186 3.814 15 H 0.050 0.950 16 N -0.735 5.735 17 C -0.233 4.233 18 H 0.077 0.923 19 C -0.079 4.079 20 N -0.971 5.971 21 Si 0.968 3.032 22 H -0.264 1.264 23 H -0.299 1.299 24 H -0.294 1.294 25 C -0.121 4.121 26 H 0.066 0.934 27 C 0.131 3.869 28 C 0.348 3.652 29 O -0.487 6.487 30 N -0.531 5.531 31 H 0.092 0.908 32 H 0.075 0.925 33 H 0.112 0.888 34 H 0.189 0.811 35 H 0.168 0.832 36 H 0.101 0.899 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.096 0.904 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.371 0.629 43 H 0.249 0.751 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.303 -2.289 8.766 29.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.025 3.975 3 C -0.190 4.190 4 C -0.051 4.051 5 C -0.223 4.223 6 C 0.364 3.636 7 O -0.454 6.454 8 N -0.350 5.350 9 C -0.001 4.001 10 C -0.125 4.125 11 H 0.111 0.889 12 C -0.120 4.120 13 C -0.178 4.178 14 C 0.077 3.923 15 H 0.068 0.932 16 N -0.374 5.374 17 C -0.365 4.365 18 H 0.095 0.905 19 C -0.271 4.271 20 N -0.623 5.623 21 Si 0.798 3.202 22 H -0.188 1.188 23 H -0.226 1.226 24 H -0.221 1.221 25 C -0.141 4.141 26 H 0.084 0.916 27 C 0.009 3.991 28 C 0.169 3.831 29 O -0.297 6.297 30 N -0.252 5.252 31 H 0.111 0.889 32 H 0.094 0.906 33 H 0.131 0.869 34 H 0.207 0.793 35 H 0.186 0.814 36 H 0.119 0.881 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.114 0.886 40 H 0.065 0.935 41 H 0.087 0.913 42 H 0.203 0.797 43 H 0.058 0.942 44 H 0.067 0.933 45 H 0.097 0.903 46 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -28.317 -3.590 7.895 29.615 hybrid contribution 2.383 0.371 -0.273 2.427 sum -25.934 -3.220 7.622 27.222 Atomic orbital electron populations 1.20962 0.85535 1.05304 1.04548 1.22016 0.98776 0.86963 0.89782 1.22358 0.93631 1.00772 1.02283 1.22194 0.95443 0.96645 0.90851 1.20836 0.92882 0.95943 1.12622 1.17953 0.86901 0.79879 0.78862 1.90826 1.72247 1.39647 1.42635 1.49779 1.07400 1.32252 1.45551 1.21688 0.96185 0.88535 0.93695 1.22162 0.93450 0.99267 0.97597 0.88927 1.21661 0.94398 0.93287 1.02630 1.23595 0.95588 0.98857 0.99793 1.20388 0.86577 0.94404 0.90963 0.93176 1.42716 1.02784 1.76543 1.15337 1.19669 0.84879 1.33463 0.98452 0.90474 1.25530 1.01983 1.03039 0.96571 1.69818 1.32832 1.51215 1.08398 0.85135 0.80623 0.76681 0.77733 1.18829 1.22625 1.22126 1.22282 0.97694 0.94919 0.99205 0.91556 1.21377 0.79651 0.97303 1.00754 1.19220 0.86762 0.84699 0.92466 1.84747 1.76882 1.32892 1.35134 1.67167 1.08637 1.32321 1.17032 0.88929 0.90598 0.86901 0.79345 0.81439 0.88052 0.88968 0.91103 0.88579 0.93475 0.91348 0.79741 0.94231 0.93310 0.90339 0.72390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.72 10.16 71.23 0.72 0.00 16 2 C 0.16 2.34 6.78 42.58 0.29 2.63 16 3 C -0.17 -1.79 9.71 22.32 0.22 -1.57 16 4 C -0.03 -0.39 8.57 22.72 0.19 -0.20 16 5 C -0.22 -5.14 5.56 -19.91 -0.11 -5.25 16 6 C 0.57 17.56 7.32 86.69 0.63 18.19 16 7 O -0.57 -23.45 16.53 10.24 0.17 -23.28 16 8 N -0.62 -16.10 3.43 -818.86 -2.81 -18.90 16 9 C 0.12 1.99 5.18 85.00 0.44 2.43 16 10 C -0.11 -2.06 2.77 -10.56 -0.03 -2.09 16 11 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 12 C -0.08 -1.58 6.72 31.13 0.21 -1.37 16 13 C -0.14 -4.05 6.74 32.80 0.22 -3.83 16 14 C 0.19 6.72 3.41 45.13 0.15 6.88 16 15 H 0.05 1.86 8.09 -2.39 -0.02 1.84 16 16 N -0.73 -36.00 5.11 -322.25 -1.65 -37.65 16 17 C -0.23 -12.69 9.96 84.04 0.84 -11.85 16 18 H 0.08 4.03 7.83 -2.91 -0.02 4.00 16 19 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 20 N -0.97 -59.95 13.06 21.65 0.28 -59.67 16 21 Si 0.97 46.34 29.55 68.60 2.03 48.37 16 22 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 23 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 24 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 25 C -0.12 -3.63 2.41 -10.61 -0.03 -3.66 16 26 H 0.07 2.23 7.92 -2.39 -0.02 2.21 16 27 C 0.13 4.09 6.83 85.07 0.58 4.67 16 28 C 0.35 8.84 7.74 85.13 0.66 9.50 16 29 O -0.49 -13.15 12.39 -72.95 -0.90 -14.06 16 30 N -0.53 -11.83 10.28 -296.05 -3.04 -14.87 16 31 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.11 0.06 8.07 -2.39 -0.02 0.04 16 34 H 0.19 0.33 8.06 -2.91 -0.02 0.31 16 35 H 0.17 1.80 5.60 -2.91 -0.02 1.79 16 36 H 0.10 1.19 7.98 -2.39 -0.02 1.17 16 37 H 0.09 1.20 6.30 -2.39 -0.02 1.18 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.66 7.98 -2.39 -0.02 1.64 16 41 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.37 19.91 7.68 -92.70 -0.71 19.20 16 43 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 44 H 0.05 1.86 8.06 -2.39 -0.02 1.85 16 45 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 46 H 0.42 7.14 9.06 -74.06 -0.67 6.47 16 Total: -1.00 -81.61 374.94 -0.82 -82.43 By element: Atomic # 1 Polarization: 27.60 SS G_CDS: -0.36 Total: 27.24 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 5.46 Total: 10.39 kcal Atomic # 7 Polarization: -123.88 SS G_CDS: -7.21 Total: -131.09 kcal Atomic # 8 Polarization: -36.60 SS G_CDS: -0.73 Total: -37.34 kcal Atomic # 14 Polarization: 46.34 SS G_CDS: 2.03 Total: 48.37 kcal Total: -81.61 -0.82 -82.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026365597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.087 kcal (2) G-P(sol) polarization free energy of solvation -81.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds