Wall clock time and date at job start Tue Mar 31 2020 17:08:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36396 * 120.34936 * 2 1 4 4 C 1.40191 * 119.26734 * 180.02562 * 3 2 1 5 5 C 1.35350 * 119.94889 * 359.74519 * 4 3 2 6 6 N 1.35767 * 120.69784 * 0.53088 * 5 4 3 7 7 C 1.46502 * 119.62218 * 179.71285 * 6 5 4 8 8 C 1.50695 * 109.47321 * 269.73101 * 7 6 5 9 9 O 1.21285 * 120.00337 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.47157 * 120.71201 * 180.02562 * 10 8 7 12 12 C 1.53889 * 108.03428 * 132.75613 * 11 10 8 13 13 H 1.08995 * 112.58227 * 182.22135 * 12 11 10 14 14 C 1.54543 * 107.82743 * 306.50714 * 12 11 10 15 15 C 1.54280 * 104.85303 * 89.07268 * 14 12 11 16 16 C 1.54549 * 104.84617 * 359.97438 * 15 14 12 17 17 H 1.09008 * 112.17589 * 146.40887 * 16 15 14 18 18 C 1.48437 * 120.83341 * 0.38221 * 10 8 7 19 19 N 1.48307 * 104.35730 * 24.71097 * 16 15 14 20 20 C 1.36933 * 128.08312 * 139.09679 * 19 16 15 21 21 H 1.08004 * 119.99638 * 344.93749 * 20 19 16 22 22 C 1.38805 * 120.00304 * 164.93759 * 20 19 16 23 23 N 1.31618 * 119.99910 * 350.60630 * 22 20 19 24 24 Si 1.86803 * 119.99915 * 170.61350 * 22 20 19 25 25 H 1.48506 * 109.47269 * 94.81580 * 24 22 20 26 26 H 1.48503 * 109.46802 * 214.80966 * 24 22 20 27 27 H 1.48493 * 109.47428 * 334.80929 * 24 22 20 28 28 C 1.34660 * 120.75068 * 359.44698 * 6 5 4 29 29 O 1.22059 * 119.98033 * 180.27271 * 28 6 5 30 30 H 1.08998 * 109.46794 * 269.97664 * 1 2 3 31 31 H 1.08998 * 109.46897 * 29.97709 * 1 2 3 32 32 H 1.09002 * 109.46715 * 149.97531 * 1 2 3 33 33 H 1.08002 * 120.36486 * 0.04291 * 3 2 1 34 34 H 1.07997 * 120.02524 * 180.02562 * 4 3 2 35 35 H 1.07996 * 119.65413 * 180.24958 * 5 4 3 36 36 H 1.08998 * 109.46742 * 149.72904 * 7 6 5 37 37 H 1.08997 * 109.47053 * 29.73539 * 7 6 5 38 38 H 1.09003 * 109.75387 * 13.11978 * 11 10 8 39 39 H 1.09002 * 109.79055 * 252.41543 * 11 10 8 40 40 H 1.09004 * 110.36402 * 207.91051 * 14 12 11 41 41 H 1.08997 * 110.36681 * 330.11543 * 14 12 11 42 42 H 1.09000 * 110.35988 * 241.15623 * 15 14 12 43 43 H 1.08998 * 110.37056 * 118.84103 * 15 14 12 44 44 H 1.09006 * 110.56905 * 107.75011 * 18 10 8 45 45 H 1.08996 * 109.56830 * 346.61353 * 18 10 8 46 46 H 0.97000 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 0.0041 6 7 3.5636 -1.2053 -0.0014 7 6 4.2949 -2.4748 -0.0025 8 6 4.5446 -2.9095 -1.4237 9 8 4.1510 -2.2260 -2.3450 10 7 5.2063 -4.0573 -1.6709 11 6 5.4592 -4.4964 -3.0525 12 6 6.9378 -4.9099 -3.1578 13 1 7.2166 -5.2134 -4.1669 14 6 7.7963 -3.7318 -2.6446 15 6 7.9379 -3.9768 -1.1280 16 6 7.1515 -5.2805 -0.8624 17 1 7.5988 -5.8759 -0.0663 18 6 5.6899 -4.9117 -0.5576 19 7 7.1627 -5.9887 -2.1655 20 6 7.3393 -7.3265 -2.3982 21 1 7.7316 -7.9630 -1.6188 22 6 7.0141 -7.8646 -3.6357 23 7 6.3674 -7.1360 -4.5207 24 14 7.4943 -9.6228 -4.0450 25 1 6.3572 -10.5294 -3.7438 26 1 7.8360 -9.7197 -5.4869 27 1 8.6711 -10.0172 -3.2297 28 6 2.2170 -1.2128 -0.0005 29 8 1.6130 -2.2734 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6679 2.1190 0.0007 34 1 4.1559 2.0752 -0.0001 35 1 5.3312 -0.0496 0.0078 36 1 3.7054 -3.2340 0.5114 37 1 5.2478 -2.3456 0.5107 38 1 5.2557 -3.6774 -3.7424 39 1 4.8209 -5.3468 -3.2921 40 1 8.7757 -3.7394 -3.1231 41 1 7.2909 -2.7843 -2.8319 42 1 7.5012 -3.1500 -0.5678 43 1 8.9868 -4.1050 -0.8607 44 1 5.0894 -5.8183 -0.4819 45 1 5.6379 -4.3556 0.3785 46 1 6.1399 -7.5121 -5.3854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029307387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:02 Heat of formation + Delta-G solvation = 10.250116 kcal Electronic energy + Delta-G solvation = -29617.463505 eV Core-core repulsion = 25701.910301 eV Total energy + Delta-G solvation = -3915.553204 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.53361 -39.91003 -37.87874 -36.86540 -35.13726 -33.82218 -32.43951 -31.37787 -30.73975 -29.41544 -28.49834 -27.25054 -26.05466 -24.01350 -23.81859 -22.77366 -22.50252 -20.08890 -19.71945 -18.71555 -17.56199 -17.49436 -17.22595 -16.32640 -16.20162 -15.65514 -15.27889 -14.84054 -14.65374 -14.33547 -14.14738 -13.86174 -13.72990 -13.20368 -13.11905 -12.95207 -12.77634 -12.73605 -12.32170 -12.18701 -11.93839 -11.90900 -11.72046 -11.66503 -11.58802 -11.09087 -10.93613 -10.86333 -10.44462 -10.23097 -10.08709 -9.95369 -9.91646 -9.74794 -9.64075 -9.30878 -8.84591 -8.15878 -7.87253 -6.91792 -5.89425 -3.25708 0.77036 1.87561 2.46704 2.90085 3.32596 3.38385 3.40594 3.40911 3.70873 4.36343 4.46588 4.51232 4.64663 4.76942 4.94440 5.04054 5.08936 5.17546 5.21814 5.26222 5.50339 5.51982 5.54329 5.63059 5.64137 5.70124 5.75727 5.85537 6.00263 6.10437 6.12627 6.22552 6.27697 6.30536 6.42955 6.45169 6.54212 6.60705 6.71503 6.77005 6.88305 7.03614 7.23151 7.43270 7.63465 7.91244 8.05514 8.07693 8.51770 8.99470 9.62045 10.37161 11.23393 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.003133 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.862547 B = 8933.695037 C = 9379.395807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.210 4.210 3 C -0.024 4.024 4 C -0.233 4.233 5 C 0.141 3.859 6 N -0.476 5.476 7 C 0.071 3.929 8 C 0.495 3.505 9 O -0.546 6.546 10 N -0.587 5.587 11 C 0.113 3.887 12 C 0.169 3.831 13 H 0.119 0.881 14 C -0.137 4.137 15 C -0.121 4.121 16 C 0.133 3.867 17 H 0.080 0.920 18 C 0.092 3.908 19 N -0.583 5.583 20 C -0.230 4.230 21 H 0.077 0.923 22 C -0.002 4.002 23 N -0.912 5.912 24 Si 0.913 3.087 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.522 3.478 29 O -0.546 6.546 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.131 0.869 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.068 0.932 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.048 0.952 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.850 15.854 11.649 19.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.215 4.215 3 C -0.045 4.045 4 C -0.256 4.256 5 C 0.013 3.987 6 N -0.186 5.186 7 C -0.054 4.054 8 C 0.281 3.719 9 O -0.425 6.425 10 N -0.319 5.319 11 C -0.010 4.010 12 C 0.061 3.939 13 H 0.137 0.863 14 C -0.176 4.176 15 C -0.160 4.160 16 C 0.024 3.976 17 H 0.098 0.902 18 C -0.033 4.033 19 N -0.304 5.304 20 C -0.358 4.358 21 H 0.095 0.905 22 C -0.199 4.199 23 N -0.557 5.557 24 Si 0.743 3.257 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.206 1.206 28 C 0.324 3.676 29 O -0.428 6.428 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.149 0.851 34 H 0.161 0.839 35 H 0.176 0.824 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.087 0.913 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.076 0.924 44 H 0.091 0.909 45 H 0.081 0.919 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -2.438 15.226 10.949 18.912 hybrid contribution 0.298 -0.878 -0.249 0.960 sum -2.140 14.347 10.700 18.025 Atomic orbital electron populations 1.20422 0.89251 1.02904 1.02033 1.20759 0.97790 0.91974 1.10930 1.21270 0.93900 0.97911 0.91436 1.20542 0.94605 0.97105 1.13359 1.21890 0.98386 0.84832 0.93562 1.45038 1.08019 1.06625 1.58871 1.21894 0.98799 0.86933 0.97782 1.20399 0.79054 0.82072 0.90406 1.90698 1.51766 1.54387 1.45663 1.48501 1.53764 1.20394 1.09260 1.22470 1.00218 0.99030 0.79250 1.21894 0.89744 0.85216 0.97013 0.86305 1.22643 1.00199 0.99220 0.95535 1.22459 0.99526 0.97150 0.96868 1.21936 0.91543 0.92660 0.91444 0.90225 1.22841 0.98800 0.94386 0.87249 1.45174 1.83276 1.02896 0.99077 1.18986 1.36167 0.82103 0.98580 0.90499 1.24854 0.99285 0.98149 0.97615 1.69837 1.42308 1.36103 1.07465 0.86110 0.78082 0.84001 0.77541 1.21560 1.21590 1.20592 1.16911 0.80441 0.91220 0.79041 1.90946 1.66442 1.32801 1.52613 0.91588 0.91658 0.90904 0.85068 0.83859 0.82409 0.85666 0.86517 0.91324 0.90124 0.92740 0.92939 0.93321 0.92445 0.90867 0.91906 0.93393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.81 36.01 0.35 -0.65 16 2 C -0.21 -2.76 5.90 -104.42 -0.62 -3.38 16 3 C -0.02 -0.23 9.75 -39.51 -0.39 -0.62 16 4 C -0.23 -2.11 10.01 -39.88 -0.40 -2.51 16 5 C 0.14 1.45 10.28 -16.84 -0.17 1.28 16 6 N -0.48 -6.58 2.07 -121.07 -0.25 -6.83 16 7 C 0.07 0.96 4.20 -5.19 -0.02 0.94 16 8 C 0.50 8.91 7.78 -10.99 -0.09 8.82 16 9 O -0.55 -11.85 15.90 5.55 0.09 -11.76 16 10 N -0.59 -10.89 2.26 -170.54 -0.39 -11.28 16 11 C 0.11 2.47 5.81 -3.22 -0.02 2.45 16 12 C 0.17 3.72 3.12 -65.67 -0.20 3.51 16 13 H 0.12 3.01 6.37 -51.93 -0.33 2.68 16 14 C -0.14 -2.49 6.18 -25.25 -0.16 -2.65 16 15 C -0.12 -1.91 6.19 -25.25 -0.16 -2.06 16 16 C 0.13 2.36 4.27 -65.71 -0.28 2.08 16 17 H 0.08 1.32 8.14 -51.92 -0.42 0.90 16 18 C 0.09 1.50 5.91 -2.56 -0.02 1.49 16 19 N -0.58 -13.28 2.80 -152.66 -0.43 -13.70 16 20 C -0.23 -5.86 10.37 -15.06 -0.16 -6.02 16 21 H 0.08 1.90 7.85 -52.48 -0.41 1.49 16 22 C 0.00 -0.04 5.42 -17.43 -0.09 -0.13 16 23 N -0.91 -24.85 10.41 55.49 0.58 -24.27 16 24 Si 0.91 20.98 29.56 -169.99 -5.03 15.96 16 25 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 28 C 0.52 8.51 7.39 -15.45 -0.11 8.39 16 29 O -0.55 -10.86 15.76 4.86 0.08 -10.78 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.57 8.09 -51.93 -0.42 0.15 16 32 H 0.07 0.97 7.62 -51.93 -0.40 0.57 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.48 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.16 1.13 8.03 -52.49 -0.42 0.70 16 36 H 0.13 1.72 7.30 -51.93 -0.38 1.35 16 37 H 0.12 1.08 7.48 -51.93 -0.39 0.69 16 38 H 0.07 1.54 7.11 -51.93 -0.37 1.17 16 39 H 0.08 2.04 7.82 -51.93 -0.41 1.64 16 40 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 41 H 0.05 0.94 7.84 -51.93 -0.41 0.53 16 42 H 0.05 0.65 7.85 -51.93 -0.41 0.24 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.06 0.76 6.13 -51.93 -0.32 0.44 16 46 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 367.11 15.07 5.53 5.53 Total: -1.00 -33.60 367.11 -9.09 -42.69 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.75 Total: 3.49 kcal Atomic # 6 Polarization: 13.48 SS G_CDS: -2.52 Total: 10.96 kcal Atomic # 7 Polarization: -55.59 SS G_CDS: -0.49 Total: -56.08 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.60 -9.09 -42.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029307387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.941 kcal (2) G-P(sol) polarization free energy of solvation -33.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds