Wall clock time and date at job start Tue Mar 31 2020 17:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.36396 * 120.34936 * 2 1 4 4 C 1.40191 * 119.26734 * 180.02562 * 3 2 1 5 5 C 1.35350 * 119.94889 * 359.74519 * 4 3 2 6 6 N 1.35767 * 120.69784 * 0.53088 * 5 4 3 7 7 C 1.46502 * 119.62218 * 179.71285 * 6 5 4 8 8 C 1.50695 * 109.47321 * 269.73101 * 7 6 5 9 9 O 1.21285 * 120.00337 * 0.02562 * 8 7 6 10 10 N 1.34778 * 120.00044 * 179.97438 * 8 7 6 11 11 C 1.47157 * 120.71201 * 180.02562 * 10 8 7 12 12 C 1.53889 * 108.03428 * 132.75613 * 11 10 8 13 13 H 1.08995 * 112.58227 * 182.22135 * 12 11 10 14 14 C 1.54543 * 107.82743 * 306.50714 * 12 11 10 15 15 C 1.54280 * 104.85303 * 89.07268 * 14 12 11 16 16 C 1.54549 * 104.84617 * 359.97438 * 15 14 12 17 17 H 1.09008 * 112.17589 * 146.40887 * 16 15 14 18 18 C 1.48437 * 120.83341 * 0.38221 * 10 8 7 19 19 N 1.48307 * 104.35730 * 24.71097 * 16 15 14 20 20 C 1.36933 * 128.08312 * 139.09679 * 19 16 15 21 21 H 1.08004 * 119.99638 * 344.93749 * 20 19 16 22 22 C 1.38805 * 120.00304 * 164.93759 * 20 19 16 23 23 N 1.31618 * 119.99910 * 350.60630 * 22 20 19 24 24 Si 1.86803 * 119.99915 * 170.61350 * 22 20 19 25 25 H 1.48506 * 109.47269 * 94.81580 * 24 22 20 26 26 H 1.48503 * 109.46802 * 214.80966 * 24 22 20 27 27 H 1.48493 * 109.47428 * 334.80929 * 24 22 20 28 28 C 1.34660 * 120.75068 * 359.44698 * 6 5 4 29 29 O 1.22059 * 119.98033 * 180.27271 * 28 6 5 30 30 H 1.08998 * 109.46794 * 269.97664 * 1 2 3 31 31 H 1.08998 * 109.46897 * 29.97709 * 1 2 3 32 32 H 1.09002 * 109.46715 * 149.97531 * 1 2 3 33 33 H 1.08002 * 120.36486 * 0.04291 * 3 2 1 34 34 H 1.07997 * 120.02524 * 180.02562 * 4 3 2 35 35 H 1.07996 * 119.65413 * 180.24958 * 5 4 3 36 36 H 1.08998 * 109.46742 * 149.72904 * 7 6 5 37 37 H 1.08997 * 109.47053 * 29.73539 * 7 6 5 38 38 H 1.09003 * 109.75387 * 13.11978 * 11 10 8 39 39 H 1.09002 * 109.79055 * 252.41543 * 11 10 8 40 40 H 1.09004 * 110.36402 * 207.91051 * 14 12 11 41 41 H 1.08997 * 110.36681 * 330.11543 * 14 12 11 42 42 H 1.09000 * 110.35988 * 241.15623 * 15 14 12 43 43 H 1.08998 * 110.37056 * 118.84103 * 15 14 12 44 44 H 1.09006 * 110.56905 * 107.75011 * 18 10 8 45 45 H 1.08996 * 109.56830 * 346.61353 * 18 10 8 46 46 H 0.97000 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1962 1.1770 0.0000 4 6 3.5979 1.1506 -0.0005 5 6 4.2513 -0.0347 0.0041 6 7 3.5636 -1.2053 -0.0014 7 6 4.2949 -2.4748 -0.0025 8 6 4.5446 -2.9095 -1.4237 9 8 4.1510 -2.2260 -2.3450 10 7 5.2063 -4.0573 -1.6709 11 6 5.4592 -4.4964 -3.0525 12 6 6.9378 -4.9099 -3.1578 13 1 7.2166 -5.2134 -4.1669 14 6 7.7963 -3.7318 -2.6446 15 6 7.9379 -3.9768 -1.1280 16 6 7.1515 -5.2805 -0.8624 17 1 7.5988 -5.8759 -0.0663 18 6 5.6899 -4.9117 -0.5576 19 7 7.1627 -5.9887 -2.1655 20 6 7.3393 -7.3265 -2.3982 21 1 7.7316 -7.9630 -1.6188 22 6 7.0141 -7.8646 -3.6357 23 7 6.3674 -7.1360 -4.5207 24 14 7.4943 -9.6228 -4.0450 25 1 6.3572 -10.5294 -3.7438 26 1 7.8360 -9.7197 -5.4869 27 1 8.6711 -10.0172 -3.2297 28 6 2.2170 -1.2128 -0.0005 29 8 1.6130 -2.2734 -0.0005 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8898 -0.5142 33 1 1.6679 2.1190 0.0007 34 1 4.1559 2.0752 -0.0001 35 1 5.3312 -0.0496 0.0078 36 1 3.7054 -3.2340 0.5114 37 1 5.2478 -2.3456 0.5107 38 1 5.2557 -3.6774 -3.7424 39 1 4.8209 -5.3468 -3.2921 40 1 8.7757 -3.7394 -3.1231 41 1 7.2909 -2.7843 -2.8319 42 1 7.5012 -3.1500 -0.5678 43 1 8.9868 -4.1050 -0.8607 44 1 5.0894 -5.8183 -0.4819 45 1 5.6379 -4.3556 0.3785 46 1 6.1399 -7.5121 -5.3854 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029307387.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:08:01 Heat of formation + Delta-G solvation = -10.625937 kcal Electronic energy + Delta-G solvation = -29618.368759 eV Core-core repulsion = 25701.910301 eV Total energy + Delta-G solvation = -3916.458458 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.57145 -41.36141 -39.36895 -37.94115 -36.09651 -35.46675 -34.18296 -32.55269 -32.01580 -31.09501 -29.70489 -28.11103 -27.58311 -25.54844 -25.44249 -23.89902 -23.37107 -21.54586 -21.22588 -20.30409 -18.93177 -18.50013 -18.25766 -17.93575 -17.23857 -17.05793 -16.68180 -16.44860 -15.96827 -15.63923 -15.36609 -15.25668 -14.75148 -14.68038 -14.52647 -14.44240 -13.83823 -13.73292 -13.58006 -13.36438 -13.29037 -13.14529 -13.06192 -12.94996 -12.81428 -12.76304 -12.58637 -12.43474 -11.99818 -11.83002 -11.54436 -11.44612 -11.25746 -11.12602 -11.04313 -10.80013 -10.53182 -9.80969 -8.81023 -8.73001 -7.86727 -5.22215 -0.07353 0.97575 1.45103 1.47000 1.48557 1.52298 1.56804 2.08696 2.49717 2.70383 3.33438 3.36446 3.52180 3.63478 3.78580 3.96667 4.07083 4.11010 4.13688 4.23032 4.24532 4.26764 4.31516 4.37919 4.40395 4.57362 4.71345 4.78157 4.81152 4.86285 4.92809 4.96448 5.08212 5.08726 5.14144 5.21672 5.25173 5.29543 5.42513 5.45236 5.53971 5.57511 5.70712 5.80930 6.09358 6.21934 6.47294 6.98955 7.04450 7.08528 7.72834 8.50432 9.24843 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023726 B = 0.003133 C = 0.002985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.862547 B = 8933.695037 C = 9379.395807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.254 4.254 3 C -0.001 4.001 4 C -0.225 4.225 5 C 0.126 3.874 6 N -0.480 5.480 7 C 0.078 3.922 8 C 0.494 3.506 9 O -0.589 6.589 10 N -0.588 5.588 11 C 0.130 3.870 12 C 0.167 3.833 13 H 0.075 0.925 14 C -0.127 4.127 15 C -0.108 4.108 16 C 0.127 3.873 17 H 0.099 0.901 18 C 0.094 3.906 19 N -0.606 5.606 20 C -0.229 4.229 21 H 0.085 0.915 22 C -0.060 4.060 23 N -0.941 5.941 24 Si 0.970 3.030 25 H -0.294 1.294 26 H -0.300 1.300 27 H -0.266 1.266 28 C 0.498 3.502 29 O -0.609 6.609 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.168 0.832 34 H 0.186 0.814 35 H 0.199 0.801 36 H 0.121 0.879 37 H 0.175 0.825 38 H 0.052 0.948 39 H 0.031 0.969 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.049 0.951 45 H 0.121 0.879 46 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.307 19.088 14.994 24.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.258 4.258 3 C -0.022 4.022 4 C -0.246 4.246 5 C 0.001 3.999 6 N -0.188 5.188 7 C -0.046 4.046 8 C 0.281 3.719 9 O -0.471 6.471 10 N -0.320 5.320 11 C 0.005 3.995 12 C 0.059 3.941 13 H 0.093 0.907 14 C -0.166 4.166 15 C -0.146 4.146 16 C 0.020 3.980 17 H 0.117 0.883 18 C -0.029 4.029 19 N -0.328 5.328 20 C -0.357 4.357 21 H 0.103 0.897 22 C -0.254 4.254 23 N -0.589 5.589 24 Si 0.800 3.200 25 H -0.222 1.222 26 H -0.227 1.227 27 H -0.191 1.191 28 C 0.303 3.697 29 O -0.496 6.496 30 H 0.092 0.908 31 H 0.109 0.891 32 H 0.056 0.944 33 H 0.186 0.814 34 H 0.203 0.797 35 H 0.215 0.785 36 H 0.139 0.861 37 H 0.192 0.808 38 H 0.071 0.929 39 H 0.049 0.951 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.092 0.908 44 H 0.067 0.933 45 H 0.139 0.861 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.235 18.507 14.363 23.428 hybrid contribution -0.361 -1.748 -1.277 2.194 sum -0.596 16.759 13.086 21.271 Atomic orbital electron populations 1.20395 0.88925 1.02397 1.02462 1.20925 0.98501 0.92117 1.14277 1.21766 0.94731 0.98065 0.87660 1.21158 0.94371 0.98372 1.10739 1.22718 1.00330 0.83927 0.92967 1.45098 1.07506 1.07845 1.58381 1.21983 1.01310 0.87210 0.94144 1.21241 0.77413 0.81014 0.92187 1.90676 1.53023 1.55665 1.47692 1.48492 1.54248 1.21089 1.08194 1.21916 0.99522 0.96481 0.81561 1.21687 0.90230 0.86848 0.95362 0.90709 1.22500 0.99103 0.97253 0.97743 1.22419 1.00519 0.96967 0.94730 1.22274 0.92710 0.93474 0.89591 0.88272 1.22930 0.97213 0.94235 0.88560 1.45388 1.83371 1.02393 1.01625 1.19344 1.34370 0.83684 0.98350 0.89735 1.25566 1.00392 1.01339 0.98125 1.70053 1.44209 1.37248 1.07341 0.85190 0.77821 0.80363 0.76641 1.22176 1.22715 1.19094 1.17522 0.81477 0.91591 0.79125 1.90895 1.67781 1.34699 1.56235 0.90793 0.89079 0.94359 0.81423 0.79697 0.78454 0.86111 0.80753 0.92937 0.95085 0.92741 0.92508 0.89436 0.90789 0.93257 0.86094 0.94609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.91 9.81 71.24 0.70 -1.21 16 2 C -0.25 -6.42 5.90 -19.73 -0.12 -6.54 16 3 C 0.00 -0.01 9.75 22.31 0.22 0.21 16 4 C -0.22 -2.88 10.01 22.08 0.22 -2.65 16 5 C 0.13 2.01 10.28 83.42 0.86 2.87 16 6 N -0.48 -12.06 2.07 -655.08 -1.36 -13.42 16 7 C 0.08 1.86 4.20 85.63 0.36 2.22 16 8 C 0.49 17.15 7.78 87.66 0.68 17.84 16 9 O -0.59 -25.71 15.90 -3.04 -0.05 -25.76 16 10 N -0.59 -21.49 2.26 -811.86 -1.84 -23.33 16 11 C 0.13 5.99 5.81 86.55 0.50 6.49 16 12 C 0.17 7.55 3.12 45.47 0.14 7.70 16 13 H 0.07 4.05 6.37 -2.39 -0.02 4.03 16 14 C -0.13 -4.42 6.18 31.55 0.20 -4.22 16 15 C -0.11 -2.91 6.19 31.56 0.20 -2.71 16 16 C 0.13 4.13 4.27 45.44 0.19 4.32 16 17 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 18 C 0.09 2.84 5.91 86.28 0.51 3.35 16 19 N -0.61 -27.63 2.80 -636.88 -1.78 -29.42 16 20 C -0.23 -11.76 10.37 84.03 0.87 -10.88 16 21 H 0.08 4.12 7.85 -2.91 -0.02 4.10 16 22 C -0.06 -3.27 5.42 84.86 0.46 -2.81 16 23 N -0.94 -54.57 10.41 21.65 0.23 -54.34 16 24 Si 0.97 44.52 29.56 68.60 2.03 46.55 16 25 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 28 C 0.50 16.19 7.39 84.82 0.63 16.82 16 29 O -0.61 -25.46 15.76 -5.51 -0.09 -25.55 16 30 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.09 1.47 8.09 -2.39 -0.02 1.45 16 32 H 0.04 1.10 7.62 -2.39 -0.02 1.08 16 33 H 0.17 1.41 8.06 -2.91 -0.02 1.39 16 34 H 0.19 0.86 8.06 -2.91 -0.02 0.84 16 35 H 0.20 1.47 8.03 -2.91 -0.02 1.44 16 36 H 0.12 3.09 7.30 -2.39 -0.02 3.07 16 37 H 0.18 2.03 7.48 -2.39 -0.02 2.01 16 38 H 0.05 2.52 7.11 -2.39 -0.02 2.51 16 39 H 0.03 1.71 7.82 -2.39 -0.02 1.69 16 40 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 41 H 0.06 1.92 7.84 -2.39 -0.02 1.90 16 42 H 0.09 1.73 7.85 -2.39 -0.02 1.71 16 43 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 45 H 0.12 2.27 6.13 -2.39 -0.01 2.25 16 46 H 0.24 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -83.81 367.11 4.74 -79.07 By element: Atomic # 1 Polarization: 14.44 SS G_CDS: 0.98 Total: 15.42 kcal Atomic # 6 Polarization: 24.16 SS G_CDS: 6.62 Total: 30.77 kcal Atomic # 7 Polarization: -115.76 SS G_CDS: -4.75 Total: -120.51 kcal Atomic # 8 Polarization: -51.17 SS G_CDS: -0.14 Total: -51.31 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -83.81 4.74 -79.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029307387.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.446 kcal (2) G-P(sol) polarization free energy of solvation -83.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds