Wall clock time and date at job start Tue Mar 31 2020 16:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 117.00019 * 2 1 4 4 C 1.39344 * 120.53772 * 0.26895 * 3 2 1 5 5 C 1.38305 * 118.43391 * 180.29018 * 4 3 2 6 6 C 1.50704 * 120.27311 * 179.71153 * 5 4 3 7 7 C 1.38762 * 119.45060 * 359.72581 * 5 4 3 8 8 N 1.31380 * 121.06357 * 359.97438 * 7 5 4 9 9 C 1.32860 * 121.69740 * 0.02690 * 8 7 5 10 10 C 1.47825 * 119.78284 * 179.97438 * 9 8 7 11 11 O 1.21558 * 120.00072 * 173.19041 * 10 9 8 12 12 N 1.34776 * 120.00528 * 353.18930 * 10 9 8 13 13 C 1.47164 * 120.71495 * 172.07327 * 12 10 9 14 14 C 1.53880 * 108.02642 * 132.75087 * 13 12 10 15 15 H 1.09007 * 112.57602 * 182.22482 * 14 13 12 16 16 C 1.54129 * 107.71410 * 306.32413 * 14 13 12 17 17 C 1.54282 * 104.88856 * 89.41389 * 16 14 13 18 18 C 1.54551 * 104.84846 * 359.81026 * 17 16 14 19 19 H 1.08998 * 112.18078 * 146.40760 * 18 17 16 20 20 C 1.49253 * 120.76360 * 352.15441 * 12 10 9 21 21 N 1.48303 * 107.21045 * 58.36591 * 14 13 12 22 22 C 1.36933 * 128.07963 * 106.70329 * 21 14 13 23 23 H 1.08003 * 120.00286 * 211.68219 * 22 21 14 24 24 C 1.38819 * 120.00019 * 31.67169 * 22 21 14 25 25 N 1.31624 * 119.99833 * 198.45120 * 24 22 21 26 26 Si 1.86793 * 119.99857 * 18.45730 * 24 22 21 27 27 H 1.48508 * 109.47011 * 275.97986 * 26 24 22 28 28 H 1.48493 * 109.47417 * 35.97966 * 26 24 22 29 29 H 1.48494 * 109.47292 * 155.98363 * 26 24 22 30 30 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46789 * 299.99873 * 1 2 3 32 32 H 1.08999 * 109.47176 * 60.00048 * 1 2 3 33 33 H 1.07990 * 120.78349 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.46643 * 270.01496 * 6 5 4 35 35 H 1.08991 * 109.47394 * 30.02023 * 6 5 4 36 36 H 1.09004 * 109.46799 * 150.02183 * 6 5 4 37 37 H 1.08001 * 119.47242 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.74669 * 13.11755 * 13 12 10 39 39 H 1.08995 * 109.75068 * 252.38376 * 13 12 10 40 40 H 1.09000 * 110.50733 * 330.47677 * 16 14 13 41 41 H 1.09004 * 110.27757 * 208.23124 * 16 14 13 42 42 H 1.09005 * 110.36409 * 240.96567 * 17 16 14 43 43 H 1.08998 * 110.36197 * 118.65235 * 17 16 14 44 44 H 1.08998 * 110.51226 * 107.82161 * 20 12 10 45 45 H 1.09001 * 109.74506 * 346.60300 * 20 12 10 46 46 H 0.97000 * 119.99886 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0056 5 6 1.9696 3.5928 -0.0008 6 6 1.2019 4.8897 -0.0016 7 6 3.3572 3.6012 -0.0067 8 7 4.0419 2.4800 -0.0059 9 6 3.4410 1.2951 0.0001 10 6 4.2531 0.0599 0.0003 11 8 3.7142 -1.0219 0.1306 12 7 5.5912 0.1330 -0.1441 13 6 6.4320 -1.0627 0.0262 14 6 7.4130 -1.1274 -1.1576 15 1 8.0496 -2.0117 -1.1256 16 6 6.5862 -1.0545 -2.4563 17 6 6.4733 0.4518 -2.7703 18 6 7.2402 1.1534 -1.6265 19 1 7.7409 2.0612 -1.9631 20 6 6.2533 1.4282 -0.4782 21 7 8.1994 0.1299 -1.1451 22 6 9.5076 0.3041 -0.7800 23 1 9.8236 1.2339 -0.3304 24 6 10.4278 -0.7144 -0.9876 25 7 11.5695 -0.7134 -0.3326 26 14 10.0457 -2.0861 -2.1965 27 1 9.2286 -3.1268 -1.5221 28 1 9.2902 -1.5338 -3.3494 29 1 11.3144 -2.6885 -2.6788 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2175 2.3528 0.0105 34 1 1.0125 5.1990 -1.0295 35 1 0.2533 4.7507 0.5168 36 1 1.7850 5.6573 0.5072 37 1 3.8828 4.5447 -0.0113 38 1 5.8060 -1.9549 0.0351 39 1 6.9874 -0.9922 0.9614 40 1 5.5967 -1.4854 -2.3038 41 1 7.1044 -1.5724 -3.2635 42 1 5.4281 0.7615 -2.7721 43 1 6.9375 0.6748 -3.7309 44 1 6.7926 1.8157 0.3861 45 1 5.5048 2.1519 -0.8010 46 1 12.2123 -1.4252 -0.4773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029340466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:54 Heat of formation + Delta-G solvation = 31.705475 kcal Electronic energy + Delta-G solvation = -29923.480364 eV Core-core repulsion = 26008.857534 eV Total energy + Delta-G solvation = -3914.622830 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.19308 -39.72885 -38.43477 -37.71644 -34.29285 -33.40913 -32.27873 -31.17062 -30.82135 -29.83437 -28.44265 -27.61587 -26.08851 -24.06981 -23.90646 -23.14653 -22.44944 -20.57587 -19.83050 -18.99637 -17.78678 -17.69670 -17.08784 -16.33194 -16.18818 -15.89570 -15.30918 -14.88708 -14.76726 -14.42738 -14.30041 -13.98418 -13.70532 -13.45967 -13.29395 -13.13182 -12.97911 -12.82656 -12.68966 -12.51974 -12.22831 -11.97313 -11.75825 -11.67243 -11.55357 -11.19724 -10.93421 -10.84464 -10.48103 -10.12250 -9.85102 -9.80366 -9.70315 -9.68086 -9.47196 -9.18141 -8.61064 -8.45481 -8.06112 -6.84180 -5.95948 -3.34190 0.53341 1.01749 2.91798 2.94344 3.31845 3.36572 3.48977 3.53843 3.82249 4.13850 4.28738 4.45366 4.54293 4.63227 4.68690 4.78097 4.85498 4.90926 5.12117 5.15891 5.19687 5.25296 5.27546 5.51646 5.55189 5.57101 5.64161 5.69468 5.80395 5.82843 6.00528 6.05739 6.13830 6.34353 6.38280 6.42158 6.49816 6.54644 6.56805 6.74271 6.82210 6.91208 7.01249 7.17776 7.60620 7.79920 7.97053 8.35319 8.61934 8.81686 9.67120 10.30783 11.20314 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.003757 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.391363 B = 7451.062837 C = 8183.192408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.271 6.271 3 C 0.139 3.861 4 C -0.180 4.180 5 C -0.079 4.079 6 C -0.114 4.114 7 C 0.051 3.949 8 N -0.402 5.402 9 C 0.048 3.952 10 C 0.563 3.437 11 O -0.536 6.536 12 N -0.576 5.576 13 C 0.105 3.895 14 C 0.116 3.884 15 H 0.090 0.910 16 C -0.131 4.131 17 C -0.122 4.122 18 C 0.130 3.870 19 H 0.085 0.915 20 C 0.083 3.917 21 N -0.596 5.596 22 C -0.236 4.236 23 H 0.088 0.912 24 C 0.030 3.970 25 N -0.907 5.907 26 Si 0.879 3.121 27 H -0.281 1.281 28 H -0.267 1.267 29 H -0.303 1.303 30 H 0.104 0.896 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.143 0.857 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.165 0.835 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.061 0.939 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.066 0.934 45 H 0.124 0.876 46 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.266 9.613 -0.816 26.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.181 6.181 3 C 0.088 3.912 4 C -0.206 4.206 5 C -0.081 4.081 6 C -0.171 4.171 7 C -0.109 4.109 8 N -0.113 5.113 9 C -0.091 4.091 10 C 0.349 3.651 11 O -0.413 6.413 12 N -0.308 5.308 13 C -0.019 4.019 14 C 0.009 3.991 15 H 0.107 0.893 16 C -0.170 4.170 17 C -0.162 4.162 18 C 0.023 3.977 19 H 0.103 0.897 20 C -0.040 4.040 21 N -0.319 5.319 22 C -0.364 4.364 23 H 0.105 0.895 24 C -0.170 4.170 25 N -0.549 5.549 26 Si 0.710 3.290 27 H -0.210 1.210 28 H -0.192 1.192 29 H -0.231 1.231 30 H 0.123 0.877 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.161 0.839 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.095 0.905 37 H 0.182 0.818 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.141 0.859 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -23.210 8.746 -0.677 24.812 hybrid contribution -1.187 -0.673 -0.637 1.505 sum -24.396 8.073 -1.314 25.731 Atomic orbital electron populations 1.23194 0.78824 1.04567 1.01014 1.86448 1.20638 1.24544 1.86429 1.20021 0.92249 0.85566 0.93384 1.21583 1.00736 0.91301 1.07004 1.20958 0.95264 0.95636 0.96219 1.20806 0.99817 0.93470 1.03010 1.22818 0.90625 0.96979 1.00452 1.68027 1.37467 0.97486 1.08297 1.20875 0.88551 0.93092 1.06550 1.17583 0.82089 0.86930 0.78450 1.90780 1.71275 1.27841 1.51416 1.48410 1.04617 1.11333 1.66405 1.22340 0.92520 0.87040 1.00022 1.22270 0.91698 0.92776 0.92328 0.89306 1.22508 0.99433 0.96773 0.98287 1.22436 0.98933 0.95824 0.98968 1.22182 0.90057 0.94062 0.91445 0.89712 1.23724 0.96961 0.84326 0.98977 1.45448 1.08079 1.02723 1.75661 1.18569 0.80510 1.03615 1.33659 0.89491 1.25323 0.94919 0.98499 0.98242 1.69800 1.09482 1.34197 1.41470 0.86985 0.76017 0.82258 0.83713 1.20985 1.19162 1.23078 0.87723 0.92636 0.92651 0.83900 0.90311 0.91200 0.90516 0.81809 0.90296 0.91224 0.92046 0.92531 0.92850 0.92437 0.91530 0.85885 0.92631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.83 101.05 0.99 1.15 16 2 O -0.27 -3.77 8.59 -40.50 -0.35 -4.12 16 3 C 0.14 1.87 6.70 -38.55 -0.26 1.61 16 4 C -0.18 -1.72 8.80 -39.15 -0.34 -2.07 16 5 C -0.08 -0.67 5.90 -104.40 -0.62 -1.29 16 6 C -0.11 -0.56 10.03 36.01 0.36 -0.20 16 7 C 0.05 0.52 10.85 -17.55 -0.19 0.33 16 8 N -0.40 -5.58 6.08 -9.71 -0.06 -5.64 16 9 C 0.05 0.75 6.61 -82.89 -0.55 0.21 16 10 C 0.56 10.71 7.66 -12.34 -0.09 10.61 16 11 O -0.54 -11.37 14.64 -16.52 -0.24 -11.61 16 12 N -0.58 -11.12 2.28 -170.93 -0.39 -11.51 16 13 C 0.10 2.18 5.92 -3.22 -0.02 2.16 16 14 C 0.12 2.60 2.88 -65.89 -0.19 2.41 16 15 H 0.09 2.15 3.73 -51.93 -0.19 1.96 16 16 C -0.13 -2.63 6.01 -25.47 -0.15 -2.78 16 17 C -0.12 -2.27 6.19 -25.25 -0.16 -2.42 16 18 C 0.13 2.58 4.27 -65.66 -0.28 2.30 16 19 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 20 C 0.08 1.51 5.32 -2.05 -0.01 1.50 16 21 N -0.60 -14.28 2.40 -152.85 -0.37 -14.64 16 22 C -0.24 -6.59 10.70 -15.06 -0.16 -6.75 16 23 H 0.09 2.58 8.06 -52.48 -0.42 2.16 16 24 C 0.03 0.87 5.47 -17.43 -0.10 0.77 16 25 N -0.91 -27.80 13.97 55.49 0.78 -27.02 16 26 Si 0.88 22.53 24.84 -169.99 -4.22 18.30 16 27 H -0.28 -6.99 6.17 56.52 0.35 -6.64 16 28 H -0.27 -6.71 6.40 56.52 0.36 -6.35 16 29 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.35 7.68 -51.93 -0.40 -0.05 16 32 H 0.05 0.34 7.71 -51.93 -0.40 -0.06 16 33 H 0.14 0.93 6.46 -52.49 -0.34 0.59 16 34 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.07 0.28 8.09 -51.93 -0.42 -0.14 16 36 H 0.08 0.30 8.09 -51.93 -0.42 -0.12 16 37 H 0.16 1.20 8.06 -52.49 -0.42 0.77 16 38 H 0.08 1.61 7.08 -51.93 -0.37 1.24 16 39 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.19 7.83 -51.93 -0.41 0.78 16 41 H 0.06 1.15 7.11 -51.93 -0.37 0.78 16 42 H 0.05 0.91 7.86 -51.93 -0.41 0.51 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.12 1.98 4.44 -71.18 -0.32 1.67 16 46 H 0.26 7.70 8.31 -40.82 -0.34 7.37 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -34.52 354.99 -7.92 -42.43 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -6.65 Total: 0.91 kcal Atomic # 6 Polarization: 9.31 SS G_CDS: -1.76 Total: 7.55 kcal Atomic # 7 Polarization: -58.78 SS G_CDS: -0.04 Total: -58.82 kcal Atomic # 8 Polarization: -15.14 SS G_CDS: -0.59 Total: -15.73 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -4.22 Total: 18.30 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -34.52 -7.92 -42.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029340466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.139 kcal (2) G-P(sol) polarization free energy of solvation -34.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds