Wall clock time and date at job start Tue Mar 31 2020 16:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35656 * 117.00019 * 2 1 4 4 C 1.39344 * 120.53772 * 0.26895 * 3 2 1 5 5 C 1.38305 * 118.43391 * 180.29018 * 4 3 2 6 6 C 1.50704 * 120.27311 * 179.71153 * 5 4 3 7 7 C 1.38762 * 119.45060 * 359.72581 * 5 4 3 8 8 N 1.31380 * 121.06357 * 359.97438 * 7 5 4 9 9 C 1.32860 * 121.69740 * 0.02690 * 8 7 5 10 10 C 1.47825 * 119.78284 * 179.97438 * 9 8 7 11 11 O 1.21558 * 120.00072 * 173.19041 * 10 9 8 12 12 N 1.34776 * 120.00528 * 353.18930 * 10 9 8 13 13 C 1.47164 * 120.71495 * 172.07327 * 12 10 9 14 14 C 1.53880 * 108.02642 * 132.75087 * 13 12 10 15 15 H 1.09007 * 112.57602 * 182.22482 * 14 13 12 16 16 C 1.54129 * 107.71410 * 306.32413 * 14 13 12 17 17 C 1.54282 * 104.88856 * 89.41389 * 16 14 13 18 18 C 1.54551 * 104.84846 * 359.81026 * 17 16 14 19 19 H 1.08998 * 112.18078 * 146.40760 * 18 17 16 20 20 C 1.49253 * 120.76360 * 352.15441 * 12 10 9 21 21 N 1.48303 * 107.21045 * 58.36591 * 14 13 12 22 22 C 1.36933 * 128.07963 * 106.70329 * 21 14 13 23 23 H 1.08003 * 120.00286 * 211.68219 * 22 21 14 24 24 C 1.38819 * 120.00019 * 31.67169 * 22 21 14 25 25 N 1.31624 * 119.99833 * 198.45120 * 24 22 21 26 26 Si 1.86793 * 119.99857 * 18.45730 * 24 22 21 27 27 H 1.48508 * 109.47011 * 275.97986 * 26 24 22 28 28 H 1.48493 * 109.47417 * 35.97966 * 26 24 22 29 29 H 1.48494 * 109.47292 * 155.98363 * 26 24 22 30 30 H 1.08997 * 109.47048 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46789 * 299.99873 * 1 2 3 32 32 H 1.08999 * 109.47176 * 60.00048 * 1 2 3 33 33 H 1.07990 * 120.78349 * 0.02562 * 4 3 2 34 34 H 1.09005 * 109.46643 * 270.01496 * 6 5 4 35 35 H 1.08991 * 109.47394 * 30.02023 * 6 5 4 36 36 H 1.09004 * 109.46799 * 150.02183 * 6 5 4 37 37 H 1.08001 * 119.47242 * 180.02562 * 7 5 4 38 38 H 1.09003 * 109.74669 * 13.11755 * 13 12 10 39 39 H 1.08995 * 109.75068 * 252.38376 * 13 12 10 40 40 H 1.09000 * 110.50733 * 330.47677 * 16 14 13 41 41 H 1.09004 * 110.27757 * 208.23124 * 16 14 13 42 42 H 1.09005 * 110.36409 * 240.96567 * 17 16 14 43 43 H 1.08998 * 110.36197 * 118.65235 * 17 16 14 44 44 H 1.08998 * 110.51226 * 107.82161 * 20 12 10 45 45 H 1.09001 * 109.74506 * 346.60300 * 20 12 10 46 46 H 0.97000 * 119.99886 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0448 1.2087 0.0000 4 6 1.2969 2.3844 0.0056 5 6 1.9696 3.5928 -0.0008 6 6 1.2019 4.8897 -0.0016 7 6 3.3572 3.6012 -0.0067 8 7 4.0419 2.4800 -0.0059 9 6 3.4410 1.2951 0.0001 10 6 4.2531 0.0599 0.0003 11 8 3.7142 -1.0219 0.1306 12 7 5.5912 0.1330 -0.1441 13 6 6.4320 -1.0627 0.0262 14 6 7.4130 -1.1274 -1.1576 15 1 8.0496 -2.0117 -1.1256 16 6 6.5862 -1.0545 -2.4563 17 6 6.4733 0.4518 -2.7703 18 6 7.2402 1.1534 -1.6265 19 1 7.7409 2.0612 -1.9631 20 6 6.2533 1.4282 -0.4782 21 7 8.1994 0.1299 -1.1451 22 6 9.5076 0.3041 -0.7800 23 1 9.8236 1.2339 -0.3304 24 6 10.4278 -0.7144 -0.9876 25 7 11.5695 -0.7134 -0.3326 26 14 10.0457 -2.0861 -2.1965 27 1 9.2286 -3.1268 -1.5221 28 1 9.2902 -1.5338 -3.3494 29 1 11.3144 -2.6885 -2.6788 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 0.2175 2.3528 0.0105 34 1 1.0125 5.1990 -1.0295 35 1 0.2533 4.7507 0.5168 36 1 1.7850 5.6573 0.5072 37 1 3.8828 4.5447 -0.0113 38 1 5.8060 -1.9549 0.0351 39 1 6.9874 -0.9922 0.9614 40 1 5.5967 -1.4854 -2.3038 41 1 7.1044 -1.5724 -3.2635 42 1 5.4281 0.7615 -2.7721 43 1 6.9375 0.6748 -3.7309 44 1 6.7926 1.8157 0.3861 45 1 5.5048 2.1519 -0.8010 46 1 12.2123 -1.4252 -0.4773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029340466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:42:53 Heat of formation + Delta-G solvation = 9.866056 kcal Electronic energy + Delta-G solvation = -29924.427393 eV Core-core repulsion = 26008.857534 eV Total energy + Delta-G solvation = -3915.569858 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.23178 -41.14926 -39.29962 -39.22757 -35.54900 -34.76527 -34.13223 -32.43531 -32.01229 -31.74973 -29.20418 -28.48973 -27.48549 -25.62427 -25.46205 -24.31945 -23.37606 -21.99672 -21.44089 -20.63848 -19.11185 -18.57547 -18.27510 -18.02930 -17.48521 -17.07574 -16.60672 -16.59738 -15.94154 -15.46701 -15.28955 -15.22051 -15.01610 -14.81087 -14.72417 -14.62345 -14.33826 -14.07171 -13.61684 -13.57530 -13.52451 -13.24695 -13.04944 -12.98847 -12.77518 -12.57950 -12.36299 -12.32947 -12.22012 -11.83766 -11.61699 -11.50044 -11.29351 -11.14403 -10.80649 -10.50359 -10.12306 -9.78795 -9.40256 -8.77074 -8.19635 -5.53966 -0.37414 0.21594 1.26734 1.37223 1.48102 1.75786 1.95825 2.21367 2.40381 2.76254 2.98706 3.13385 3.24705 3.53849 3.65700 3.87525 3.89954 3.93753 4.03757 4.08601 4.16227 4.22901 4.25324 4.35687 4.36158 4.51280 4.62061 4.64371 4.74087 4.76350 4.79435 4.85379 4.88406 4.90088 4.92443 4.97132 5.11262 5.18235 5.22311 5.32477 5.34161 5.53244 5.64256 5.79551 6.14163 6.23313 6.48311 6.71155 6.74080 7.20387 7.48893 8.23056 9.00690 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020745 B = 0.003757 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.391363 B = 7451.062837 C = 8183.192408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.309 6.309 3 C 0.133 3.867 4 C -0.173 4.173 5 C -0.057 4.057 6 C -0.113 4.113 7 C 0.050 3.950 8 N -0.425 5.425 9 C 0.001 3.999 10 C 0.562 3.438 11 O -0.568 6.568 12 N -0.583 5.583 13 C 0.112 3.888 14 C 0.111 3.889 15 H 0.069 0.931 16 C -0.125 4.125 17 C -0.111 4.111 18 C 0.125 3.875 19 H 0.092 0.908 20 C 0.096 3.904 21 N -0.613 5.613 22 C -0.222 4.222 23 H 0.057 0.943 24 C -0.024 4.024 25 N -0.954 5.954 26 Si 0.936 3.064 27 H -0.274 1.274 28 H -0.255 1.255 29 H -0.309 1.309 30 H 0.110 0.890 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.178 0.822 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.090 0.910 37 H 0.195 0.805 38 H 0.080 0.920 39 H 0.048 0.952 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.047 0.953 45 H 0.153 0.847 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.389 11.977 -2.111 30.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.220 6.220 3 C 0.082 3.918 4 C -0.199 4.199 5 C -0.059 4.059 6 C -0.170 4.170 7 C -0.112 4.112 8 N -0.137 5.137 9 C -0.134 4.134 10 C 0.351 3.649 11 O -0.447 6.447 12 N -0.314 5.314 13 C -0.013 4.013 14 C 0.004 3.996 15 H 0.087 0.913 16 C -0.164 4.164 17 C -0.150 4.150 18 C 0.018 3.982 19 H 0.110 0.890 20 C -0.026 4.026 21 N -0.336 5.336 22 C -0.351 4.351 23 H 0.075 0.925 24 C -0.220 4.220 25 N -0.599 5.599 26 Si 0.766 3.234 27 H -0.201 1.201 28 H -0.180 1.180 29 H -0.237 1.237 30 H 0.129 0.871 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.195 0.805 34 H 0.114 0.886 35 H 0.104 0.896 36 H 0.109 0.891 37 H 0.211 0.789 38 H 0.098 0.902 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.066 0.934 45 H 0.169 0.831 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.395 11.111 -1.985 29.629 hybrid contribution -0.126 -1.208 -0.114 1.220 sum -27.521 9.903 -2.099 29.324 Atomic orbital electron populations 1.23512 0.76159 1.05794 1.02966 1.86388 1.23579 1.25516 1.86475 1.20151 0.91714 0.86742 0.93203 1.21975 1.02277 0.90067 1.05589 1.21430 0.94819 0.97047 0.92608 1.20947 1.00171 0.91399 1.04446 1.23421 0.91886 0.96711 0.99207 1.67676 1.38711 0.97883 1.09407 1.20324 0.89273 0.92262 1.11548 1.18139 0.81725 0.88072 0.76988 1.90736 1.71775 1.29551 1.52682 1.48432 1.04975 1.10808 1.67213 1.22049 0.92429 0.88352 0.98449 1.22312 0.91720 0.91302 0.94254 0.91324 1.22439 0.99171 0.98085 0.96694 1.22363 0.99877 0.94231 0.98557 1.22430 0.89543 0.93462 0.92718 0.88974 1.23704 0.97011 0.84426 0.97485 1.45491 1.07348 1.04581 1.76222 1.18443 0.82345 1.02194 1.32125 0.92541 1.25875 0.94987 1.01179 0.99960 1.69923 1.10921 1.35606 1.43466 0.86041 0.75565 0.79938 0.81826 1.20121 1.17960 1.23710 0.87124 0.90678 0.90488 0.80452 0.88631 0.89557 0.89094 0.78858 0.90153 0.93347 0.91368 0.92487 0.90953 0.91321 0.93449 0.83096 0.92836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.13 9.83 113.37 1.11 1.25 16 2 O -0.31 -8.24 8.59 -68.84 -0.59 -8.83 16 3 C 0.13 3.33 6.70 22.93 0.15 3.48 16 4 C -0.17 -2.61 8.80 22.55 0.20 -2.41 16 5 C -0.06 -0.71 5.90 -19.72 -0.12 -0.82 16 6 C -0.11 -0.44 10.03 71.24 0.71 0.27 16 7 C 0.05 0.84 10.85 84.89 0.92 1.76 16 8 N -0.43 -11.05 6.08 -184.63 -1.12 -12.17 16 9 C 0.00 0.04 6.61 41.93 0.28 0.31 16 10 C 0.56 21.57 7.66 86.78 0.66 22.23 16 11 O -0.57 -24.64 14.64 16.98 0.25 -24.39 16 12 N -0.58 -22.80 2.28 -812.96 -1.86 -24.65 16 13 C 0.11 4.82 5.92 86.55 0.51 5.34 16 14 C 0.11 5.01 2.88 45.32 0.13 5.14 16 15 H 0.07 3.37 3.73 -2.38 -0.01 3.36 16 16 C -0.12 -4.88 6.01 31.41 0.19 -4.69 16 17 C -0.11 -3.91 6.19 31.56 0.20 -3.72 16 18 C 0.12 4.88 4.27 45.47 0.19 5.07 16 19 H 0.09 3.45 8.14 -2.39 -0.02 3.43 16 20 C 0.10 3.48 5.32 86.14 0.46 3.94 16 21 N -0.61 -29.79 2.40 -637.49 -1.53 -31.32 16 22 C -0.22 -12.83 10.70 84.04 0.90 -11.93 16 23 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 24 C -0.02 -1.45 5.47 84.86 0.46 -0.99 16 25 N -0.95 -60.75 13.97 21.65 0.30 -60.45 16 26 Si 0.94 47.65 24.84 68.60 1.70 49.35 16 27 H -0.27 -13.42 6.17 99.48 0.61 -12.81 16 28 H -0.26 -12.37 6.40 99.48 0.64 -11.74 16 29 H -0.31 -15.85 7.11 99.48 0.71 -15.15 16 30 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.07 0.69 7.68 -2.39 -0.02 0.67 16 32 H 0.08 0.68 7.71 -2.39 -0.02 0.66 16 33 H 0.18 1.35 6.46 -2.92 -0.02 1.33 16 34 H 0.10 0.19 8.14 -2.38 -0.02 0.17 16 35 H 0.09 0.14 8.09 -2.39 -0.02 0.12 16 36 H 0.09 0.18 8.09 -2.38 -0.02 0.17 16 37 H 0.19 1.97 8.06 -2.91 -0.02 1.94 16 38 H 0.08 3.39 7.08 -2.39 -0.02 3.38 16 39 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.07 2.57 7.83 -2.39 -0.02 2.55 16 41 H 0.06 2.21 7.11 -2.38 -0.02 2.19 16 42 H 0.07 2.30 7.86 -2.38 -0.02 2.28 16 43 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.15 4.68 4.44 -40.40 -0.18 4.50 16 46 H 0.26 15.94 8.31 -92.71 -0.77 15.17 16 Total: -1.00 -79.69 354.99 4.80 -74.89 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.67 Total: 13.34 kcal Atomic # 6 Polarization: 17.26 SS G_CDS: 6.97 Total: 24.23 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -4.21 Total: -128.59 kcal Atomic # 8 Polarization: -32.88 SS G_CDS: -0.34 Total: -33.22 kcal Atomic # 14 Polarization: 47.65 SS G_CDS: 1.70 Total: 49.35 kcal Total: -79.69 4.80 -74.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029340466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.756 kcal (2) G-P(sol) polarization free energy of solvation -79.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.890 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds