Wall clock time and date at job start Tue Mar 31 2020 17:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38363 * 119.40413 * 2 1 4 4 C 1.38332 * 119.45369 * 180.28067 * 3 2 1 5 5 C 1.50706 * 120.82237 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.35395 * 0.02562 * 4 3 2 7 7 C 1.47520 * 120.59712 * 180.02562 * 6 4 3 8 8 O 1.21588 * 120.00013 * 269.97195 * 7 6 4 9 9 N 1.34778 * 120.00494 * 89.97801 * 7 6 4 10 10 C 1.47171 * 120.70360 * 359.71319 * 9 7 6 11 11 C 1.54291 * 107.81730 * 132.71657 * 10 9 7 12 12 H 1.08998 * 112.53376 * 182.36722 * 11 10 9 13 13 C 1.54545 * 107.97300 * 306.71943 * 11 10 9 14 14 C 1.54276 * 104.85008 * 89.01921 * 13 11 10 15 15 C 1.54552 * 104.84682 * 0.02562 * 14 13 11 16 16 H 1.09005 * 112.17956 * 147.01845 * 15 14 13 17 17 C 1.47156 * 120.71603 * 180.02562 * 9 7 6 18 18 N 1.48303 * 104.35787 * 24.69994 * 15 14 13 19 19 C 1.36934 * 128.08086 * 139.06491 * 18 15 14 20 20 H 1.08004 * 120.00631 * 194.81263 * 19 18 15 21 21 C 1.38816 * 119.99970 * 14.80703 * 19 18 15 22 22 N 1.31618 * 119.99808 * 9.26699 * 21 19 18 23 23 Si 1.86797 * 120.00211 * 189.26310 * 21 19 18 24 24 H 1.48504 * 109.46829 * 90.00229 * 23 21 19 25 25 H 1.48500 * 109.47422 * 210.00271 * 23 21 19 26 26 H 1.48503 * 109.47201 * 330.00516 * 23 21 19 27 27 C 1.40279 * 118.80105 * 359.97438 * 6 4 3 28 28 O 1.35435 * 119.79576 * 179.97438 * 27 6 4 29 29 N 1.31875 * 119.40906 * 180.27783 * 2 1 3 30 30 H 1.09002 * 109.47108 * 269.72119 * 1 2 3 31 31 H 1.09005 * 109.47146 * 29.72373 * 1 2 3 32 32 H 1.08998 * 109.47497 * 149.72322 * 1 2 3 33 33 H 1.07996 * 120.27059 * 0.30673 * 3 2 1 34 34 H 1.08995 * 109.47087 * 270.02021 * 5 4 3 35 35 H 1.08997 * 109.46886 * 30.02547 * 5 4 3 36 36 H 1.09004 * 109.46704 * 150.02032 * 5 4 3 37 37 H 1.08993 * 109.75053 * 252.41610 * 10 9 7 38 38 H 1.08993 * 109.75102 * 13.15306 * 10 9 7 39 39 H 1.09000 * 110.36279 * 330.17739 * 13 11 10 40 40 H 1.09003 * 110.36416 * 207.86289 * 13 11 10 41 41 H 1.08995 * 110.36788 * 241.16204 * 14 13 11 42 42 H 1.08994 * 110.45467 * 118.88911 * 14 13 11 43 43 H 1.09002 * 109.74891 * 346.85115 * 17 9 7 44 44 H 1.08993 * 109.75287 * 107.58125 * 17 9 7 45 45 H 0.96998 * 120.00266 * 180.02562 * 22 21 19 46 46 H 0.96698 * 113.99791 * 270.02512 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5696 1.2066 -0.0059 5 6 4.3407 2.5015 -0.0067 6 6 4.2355 -0.0248 -0.0123 7 6 5.7096 -0.0812 -0.0181 8 8 6.3130 -0.1018 -1.0735 9 7 6.3876 -0.1102 1.1463 10 6 5.6734 -0.0797 2.4327 11 6 6.2685 -1.1853 3.3294 12 1 5.7642 -1.2582 4.2930 13 6 6.2193 -2.5149 2.5432 14 6 7.5513 -2.5644 1.7664 15 6 8.2847 -1.2604 2.1543 16 1 9.3666 -1.3897 2.1829 17 6 7.8581 -0.1660 1.1587 18 7 7.7164 -0.8979 3.4752 19 6 8.3746 -0.4114 4.5731 20 1 7.8900 -0.4138 5.5383 21 6 9.6647 0.0847 4.4455 22 7 10.1879 0.2579 3.2502 23 14 10.6582 0.5067 5.9700 24 1 11.4267 -0.6869 6.4060 25 1 11.5978 1.6135 5.6579 26 1 9.7400 0.9288 7.0581 27 6 3.4757 -1.2040 -0.0118 28 8 4.0991 -2.4063 -0.0184 29 7 2.1546 -1.1488 -0.0056 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3634 0.8925 -0.5096 32 1 -0.3634 -0.8875 -0.5181 33 1 1.6410 2.1376 0.0050 34 1 4.5219 2.8158 -1.0344 35 1 3.7643 3.2678 0.5115 36 1 5.2936 2.3571 0.5025 37 1 5.8069 0.8934 2.9052 38 1 4.6123 -0.2681 2.2694 39 1 5.3767 -2.5158 1.8518 40 1 6.1488 -3.3589 3.2294 41 1 7.3637 -2.5895 0.6930 42 1 8.1366 -3.4327 2.0688 43 1 8.2258 -0.4107 0.1622 44 1 8.2606 0.7965 1.4743 45 1 11.0896 0.6042 3.1610 46 1 4.2761 -2.7527 -0.9037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029415148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:41 Heat of formation + Delta-G solvation = -2.063063 kcal Electronic energy + Delta-G solvation = -30419.116396 eV Core-core repulsion = 26503.029252 eV Total energy + Delta-G solvation = -3916.087144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05576 -39.57033 -37.68752 -37.35138 -34.32683 -33.63571 -32.33963 -31.86141 -30.59760 -29.26556 -28.49420 -27.67282 -26.03144 -23.96458 -23.81410 -23.05863 -21.67628 -20.05093 -19.58892 -18.69902 -18.43216 -17.47821 -17.21387 -16.25636 -15.76568 -15.48950 -15.06358 -14.68506 -14.44049 -14.20086 -13.81645 -13.50743 -13.40532 -13.21609 -13.12268 -12.99010 -12.78683 -12.65849 -12.54344 -12.12713 -11.97183 -11.81238 -11.68426 -11.61512 -11.48407 -11.02104 -10.86797 -10.80466 -10.31379 -10.08052 -9.93359 -9.77398 -9.66138 -9.57887 -9.50250 -9.24578 -8.79558 -8.79038 -8.09336 -6.84816 -5.84492 -3.19785 0.74523 1.02253 2.90375 3.24200 3.35194 3.40760 3.42505 3.44729 3.72502 4.35950 4.41056 4.43637 4.72137 4.89423 5.07002 5.17550 5.21683 5.27177 5.32780 5.35202 5.46591 5.48958 5.64598 5.67994 5.74604 5.82232 5.82767 5.89902 5.93704 5.99544 6.07179 6.23517 6.35711 6.40314 6.42087 6.64779 6.67662 6.77269 6.83751 6.91981 6.98820 7.28991 7.41095 7.50266 7.69157 7.78340 8.00405 8.13507 8.57419 9.05437 9.67366 10.44605 11.28391 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003889 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.357676 B = 7198.470899 C = 7381.195833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.159 3.841 3 C -0.187 4.187 4 C 0.007 3.993 5 C -0.123 4.123 6 C -0.184 4.184 7 C 0.564 3.436 8 O -0.553 6.553 9 N -0.574 5.574 10 C 0.100 3.900 11 C 0.135 3.865 12 H 0.076 0.924 13 C -0.127 4.127 14 C -0.134 4.134 15 C 0.169 3.831 16 H 0.119 0.881 17 C 0.111 3.889 18 N -0.584 5.584 19 C -0.226 4.226 20 H 0.076 0.924 21 C -0.003 4.003 22 N -0.913 5.913 23 Si 0.912 3.088 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.281 1.281 27 C 0.352 3.648 28 O -0.470 6.470 29 N -0.506 5.506 30 H 0.081 0.919 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.142 0.858 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.069 0.931 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.070 0.930 44 H 0.081 0.919 45 H 0.255 0.745 46 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.426 1.109 -6.955 17.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.021 3.979 3 C -0.207 4.207 4 C -0.001 4.001 5 C -0.179 4.179 6 C -0.191 4.191 7 C 0.350 3.650 8 O -0.433 6.433 9 N -0.304 5.304 10 C -0.026 4.026 11 C 0.026 3.974 12 H 0.094 0.906 13 C -0.166 4.166 14 C -0.173 4.173 15 C 0.061 3.939 16 H 0.137 0.863 17 C -0.012 4.012 18 N -0.305 5.305 19 C -0.354 4.354 20 H 0.094 0.906 21 C -0.200 4.200 22 N -0.560 5.560 23 Si 0.742 3.258 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.207 1.207 27 C 0.172 3.828 28 O -0.277 6.277 29 N -0.227 5.227 30 H 0.100 0.900 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.159 0.841 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -16.252 0.462 -6.761 17.608 hybrid contribution 1.000 0.904 0.347 1.392 sum -15.252 1.366 -6.414 16.602 Atomic orbital electron populations 1.20762 0.88362 1.03608 1.03415 1.21099 0.96813 0.87139 0.92812 1.21737 0.93618 0.99495 1.05851 1.20274 0.93590 0.94366 0.91901 1.20920 1.00454 0.93023 1.03543 1.21005 0.95804 0.93905 1.08347 1.17765 0.85608 0.77359 0.84300 1.90758 1.69424 1.52355 1.30782 1.48194 1.08451 1.68953 1.04813 1.22559 0.94342 1.01178 0.84500 1.22012 0.87818 0.92057 0.95471 0.90581 1.22550 0.98073 0.97411 0.98604 1.22605 0.96560 0.99714 0.98413 1.21900 0.99607 0.88510 0.83856 0.86330 1.22552 0.75878 1.02658 1.00119 1.45182 1.00196 1.74215 1.10891 1.19012 0.96808 1.33438 0.86168 0.90599 1.24822 0.98372 1.00050 0.96730 1.69835 1.15926 1.49867 1.20326 0.86128 0.79992 0.77626 0.82012 1.21584 1.21748 1.20702 1.18986 0.86200 0.84578 0.93041 1.84719 1.76580 1.32584 1.33844 1.67014 1.09224 1.30352 1.16064 0.90034 0.90419 0.90287 0.84067 0.89797 0.90313 0.90449 0.91691 0.92234 0.91228 0.93021 0.92911 0.93016 0.91206 0.90122 0.93494 0.73835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.78 10.16 36.01 0.37 -0.41 16 2 C 0.16 1.81 6.78 -82.53 -0.56 1.25 16 3 C -0.19 -2.01 9.41 -39.50 -0.37 -2.38 16 4 C 0.01 0.09 5.95 -103.93 -0.62 -0.53 16 5 C -0.12 -1.45 9.69 36.01 0.35 -1.10 16 6 C -0.18 -2.89 3.74 -104.69 -0.39 -3.29 16 7 C 0.56 10.51 5.31 -12.48 -0.07 10.44 16 8 O -0.55 -11.82 16.57 5.29 0.09 -11.73 16 9 N -0.57 -11.12 2.24 -172.46 -0.39 -11.51 16 10 C 0.10 1.85 5.83 -3.00 -0.02 1.83 16 11 C 0.14 2.71 4.32 -65.43 -0.28 2.43 16 12 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 13 C -0.13 -2.40 6.18 -25.25 -0.16 -2.55 16 14 C -0.13 -2.67 6.18 -25.25 -0.16 -2.83 16 15 C 0.17 3.86 3.12 -65.61 -0.20 3.66 16 16 H 0.12 3.06 6.36 -51.93 -0.33 2.73 16 17 C 0.11 2.43 5.82 -3.17 -0.02 2.41 16 18 N -0.58 -13.93 2.81 -152.29 -0.43 -14.36 16 19 C -0.23 -5.91 10.37 -15.06 -0.16 -6.07 16 20 H 0.08 1.94 7.85 -52.48 -0.41 1.53 16 21 C 0.00 -0.07 5.42 -17.43 -0.09 -0.16 16 22 N -0.91 -24.94 10.44 55.49 0.58 -24.36 16 23 Si 0.91 21.18 29.56 -169.99 -5.03 16.15 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C 0.35 5.30 7.55 -16.61 -0.13 5.18 16 28 O -0.47 -6.77 11.16 -18.00 -0.20 -6.97 16 29 N -0.51 -7.11 10.28 -9.21 -0.09 -7.20 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.08 1.10 7.19 -51.93 -0.37 0.73 16 37 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.06 1.02 6.30 -51.93 -0.33 0.69 16 39 H 0.07 1.27 5.90 -51.93 -0.31 0.96 16 40 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.05 1.03 7.84 -51.93 -0.41 0.62 16 42 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.07 1.55 7.11 -51.93 -0.37 1.18 16 44 H 0.08 1.99 7.86 -51.93 -0.41 1.58 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.51 16 46 H 0.40 4.22 9.06 45.56 0.41 4.63 16 LS Contribution 365.22 15.07 5.50 5.50 Total: -1.00 -31.27 365.22 -8.35 -39.61 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: -5.88 Total: 6.99 kcal Atomic # 6 Polarization: 10.38 SS G_CDS: -2.51 Total: 7.88 kcal Atomic # 7 Polarization: -57.10 SS G_CDS: -0.33 Total: -57.43 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: -0.11 Total: -18.71 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -31.27 -8.35 -39.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029415148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.549 kcal (2) G-P(sol) polarization free energy of solvation -31.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds