Wall clock time and date at job start Tue Mar 31 2020 17:47:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38363 * 119.40413 * 2 1 4 4 C 1.38332 * 119.45369 * 180.28067 * 3 2 1 5 5 C 1.50706 * 120.82237 * 179.97438 * 4 3 2 6 6 C 1.39989 * 118.35395 * 0.02562 * 4 3 2 7 7 C 1.47520 * 120.59712 * 180.02562 * 6 4 3 8 8 O 1.21588 * 120.00013 * 269.97195 * 7 6 4 9 9 N 1.34778 * 120.00494 * 89.97801 * 7 6 4 10 10 C 1.47171 * 120.70360 * 359.71319 * 9 7 6 11 11 C 1.54291 * 107.81730 * 132.71657 * 10 9 7 12 12 H 1.08998 * 112.53376 * 182.36722 * 11 10 9 13 13 C 1.54545 * 107.97300 * 306.71943 * 11 10 9 14 14 C 1.54276 * 104.85008 * 89.01921 * 13 11 10 15 15 C 1.54552 * 104.84682 * 0.02562 * 14 13 11 16 16 H 1.09005 * 112.17956 * 147.01845 * 15 14 13 17 17 C 1.47156 * 120.71603 * 180.02562 * 9 7 6 18 18 N 1.48303 * 104.35787 * 24.69994 * 15 14 13 19 19 C 1.36934 * 128.08086 * 139.06491 * 18 15 14 20 20 H 1.08004 * 120.00631 * 194.81263 * 19 18 15 21 21 C 1.38816 * 119.99970 * 14.80703 * 19 18 15 22 22 N 1.31618 * 119.99808 * 9.26699 * 21 19 18 23 23 Si 1.86797 * 120.00211 * 189.26310 * 21 19 18 24 24 H 1.48504 * 109.46829 * 90.00229 * 23 21 19 25 25 H 1.48500 * 109.47422 * 210.00271 * 23 21 19 26 26 H 1.48503 * 109.47201 * 330.00516 * 23 21 19 27 27 C 1.40279 * 118.80105 * 359.97438 * 6 4 3 28 28 O 1.35435 * 119.79576 * 179.97438 * 27 6 4 29 29 N 1.31875 * 119.40906 * 180.27783 * 2 1 3 30 30 H 1.09002 * 109.47108 * 269.72119 * 1 2 3 31 31 H 1.09005 * 109.47146 * 29.72373 * 1 2 3 32 32 H 1.08998 * 109.47497 * 149.72322 * 1 2 3 33 33 H 1.07996 * 120.27059 * 0.30673 * 3 2 1 34 34 H 1.08995 * 109.47087 * 270.02021 * 5 4 3 35 35 H 1.08997 * 109.46886 * 30.02547 * 5 4 3 36 36 H 1.09004 * 109.46704 * 150.02032 * 5 4 3 37 37 H 1.08993 * 109.75053 * 252.41610 * 10 9 7 38 38 H 1.08993 * 109.75102 * 13.15306 * 10 9 7 39 39 H 1.09000 * 110.36279 * 330.17739 * 13 11 10 40 40 H 1.09003 * 110.36416 * 207.86289 * 13 11 10 41 41 H 1.08995 * 110.36788 * 241.16204 * 14 13 11 42 42 H 1.08994 * 110.45467 * 118.88911 * 14 13 11 43 43 H 1.09002 * 109.74891 * 346.85115 * 17 9 7 44 44 H 1.08993 * 109.75287 * 107.58125 * 17 9 7 45 45 H 0.96998 * 120.00266 * 180.02562 * 22 21 19 46 46 H 0.96698 * 113.99791 * 270.02512 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2054 0.0000 4 6 3.5696 1.2066 -0.0059 5 6 4.3407 2.5015 -0.0067 6 6 4.2355 -0.0248 -0.0123 7 6 5.7096 -0.0812 -0.0181 8 8 6.3130 -0.1018 -1.0735 9 7 6.3876 -0.1102 1.1463 10 6 5.6734 -0.0797 2.4327 11 6 6.2685 -1.1853 3.3294 12 1 5.7642 -1.2582 4.2930 13 6 6.2193 -2.5149 2.5432 14 6 7.5513 -2.5644 1.7664 15 6 8.2847 -1.2604 2.1543 16 1 9.3666 -1.3897 2.1829 17 6 7.8581 -0.1660 1.1587 18 7 7.7164 -0.8979 3.4752 19 6 8.3746 -0.4114 4.5731 20 1 7.8900 -0.4138 5.5383 21 6 9.6647 0.0847 4.4455 22 7 10.1879 0.2579 3.2502 23 14 10.6582 0.5067 5.9700 24 1 11.4267 -0.6869 6.4060 25 1 11.5978 1.6135 5.6579 26 1 9.7400 0.9288 7.0581 27 6 3.4757 -1.2040 -0.0118 28 8 4.0991 -2.4063 -0.0184 29 7 2.1546 -1.1488 -0.0056 30 1 -0.3633 -0.0050 1.0277 31 1 -0.3634 0.8925 -0.5096 32 1 -0.3634 -0.8875 -0.5181 33 1 1.6410 2.1376 0.0050 34 1 4.5219 2.8158 -1.0344 35 1 3.7643 3.2678 0.5115 36 1 5.2936 2.3571 0.5025 37 1 5.8069 0.8934 2.9052 38 1 4.6123 -0.2681 2.2694 39 1 5.3767 -2.5158 1.8518 40 1 6.1488 -3.3589 3.2294 41 1 7.3637 -2.5895 0.6930 42 1 8.1366 -3.4327 2.0688 43 1 8.2258 -0.4107 0.1622 44 1 8.2606 0.7965 1.4743 45 1 11.0896 0.6042 3.1610 46 1 4.2761 -2.7527 -0.9037 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029415148.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:40 Heat of formation + Delta-G solvation = -23.746183 kcal Electronic energy + Delta-G solvation = -30420.056646 eV Core-core repulsion = 26503.029252 eV Total energy + Delta-G solvation = -3917.027394 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.25752 -41.00099 -39.26437 -38.37276 -35.60805 -35.10182 -34.15476 -32.81917 -32.22675 -31.08739 -29.60368 -28.55160 -27.61373 -25.60515 -25.52097 -24.23378 -22.74667 -21.47804 -21.26557 -20.39389 -19.45553 -19.01121 -18.27988 -17.95494 -17.08920 -16.92022 -16.60410 -16.41303 -15.60985 -15.43853 -15.13147 -14.90878 -14.73035 -14.60122 -14.44513 -14.22852 -13.99244 -13.89732 -13.58726 -13.35544 -13.32692 -13.19948 -12.94371 -12.85393 -12.80729 -12.70684 -12.62974 -12.54736 -11.99743 -11.86158 -11.58195 -11.44688 -11.27470 -11.15770 -10.75260 -10.58342 -10.42036 -9.83322 -9.76660 -8.74581 -7.85434 -5.21886 -0.25211 0.05415 1.44590 1.49329 1.50828 1.58162 1.99870 2.32169 2.50444 2.66528 3.29226 3.33988 3.46565 3.55906 3.58864 3.98434 4.03991 4.09630 4.17290 4.22148 4.27820 4.29530 4.33130 4.51071 4.55510 4.57663 4.62445 4.68604 4.77999 4.86158 4.93446 4.95751 5.02451 5.04278 5.08651 5.13646 5.15854 5.19485 5.25693 5.35238 5.51525 5.55063 5.57069 5.79063 6.20444 6.44956 6.46920 6.83457 7.04113 7.06211 7.70922 8.50265 9.26057 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018923 B = 0.003889 C = 0.003793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.357676 B = 7198.470899 C = 7381.195833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.160 3.840 3 C -0.174 4.174 4 C 0.001 3.999 5 C -0.121 4.121 6 C -0.213 4.213 7 C 0.573 3.427 8 O -0.587 6.587 9 N -0.576 5.576 10 C 0.113 3.887 11 C 0.129 3.871 12 H 0.088 0.912 13 C -0.115 4.115 14 C -0.124 4.124 15 C 0.168 3.832 16 H 0.084 0.916 17 C 0.128 3.872 18 N -0.601 5.601 19 C -0.234 4.234 20 H 0.081 0.919 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.973 3.027 24 H -0.291 1.291 25 H -0.299 1.299 26 H -0.270 1.270 27 C 0.345 3.655 28 O -0.483 6.483 29 N -0.523 5.523 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.077 0.923 33 H 0.184 0.816 34 H 0.088 0.912 35 H 0.111 0.889 36 H 0.044 0.956 37 H 0.054 0.946 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.046 0.954 45 H 0.248 0.752 46 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.975 1.610 -6.517 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.022 3.978 3 C -0.193 4.193 4 C -0.007 4.007 5 C -0.177 4.177 6 C -0.219 4.219 7 C 0.361 3.639 8 O -0.468 6.468 9 N -0.305 5.305 10 C -0.012 4.012 11 C 0.022 3.978 12 H 0.106 0.894 13 C -0.154 4.154 14 C -0.163 4.163 15 C 0.060 3.940 16 H 0.102 0.898 17 C 0.004 3.996 18 N -0.323 5.323 19 C -0.363 4.363 20 H 0.098 0.902 21 C -0.247 4.247 22 N -0.585 5.585 23 Si 0.802 3.198 24 H -0.218 1.218 25 H -0.226 1.226 26 H -0.195 1.195 27 C 0.166 3.834 28 O -0.293 6.293 29 N -0.244 5.244 30 H 0.113 0.887 31 H 0.126 0.874 32 H 0.096 0.904 33 H 0.201 0.799 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.063 0.937 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.079 0.921 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -19.848 0.948 -6.323 20.853 hybrid contribution 1.987 0.770 0.153 2.137 sum -17.861 1.718 -6.170 18.975 Atomic orbital electron populations 1.20917 0.85291 1.05083 1.04646 1.21895 0.98733 0.86643 0.90522 1.22135 0.92381 1.01064 1.03697 1.20533 0.94916 0.93660 0.91614 1.20946 0.99326 0.93558 1.03901 1.20798 0.93403 0.95627 1.12115 1.18177 0.87029 0.75580 0.83144 1.90726 1.70720 1.53549 1.31852 1.48116 1.07212 1.69435 1.05751 1.22411 0.95190 1.00015 0.83602 1.22239 0.85928 0.93027 0.96619 0.89354 1.22457 0.97384 0.97010 0.98542 1.22477 0.97037 0.98067 0.98714 1.21731 0.98052 0.90139 0.84078 0.89831 1.22061 0.77901 1.00557 0.99114 1.45338 1.02028 1.74367 1.10565 1.19319 0.97151 1.32737 0.87084 0.90158 1.25524 0.99437 1.00750 0.99011 1.70025 1.15627 1.50896 1.21912 0.85171 0.78458 0.76761 0.79411 1.21807 1.22553 1.19504 1.19024 0.86697 0.84311 0.93387 1.84648 1.76780 1.32655 1.35230 1.67138 1.08441 1.31810 1.16979 0.88665 0.87407 0.90448 0.79907 0.89305 0.86999 0.93663 0.92767 0.90017 0.90203 0.91914 0.92701 0.92729 0.92126 0.93574 0.94303 0.72343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.06 10.16 71.24 0.72 -0.33 16 2 C 0.16 3.03 6.78 42.58 0.29 3.32 16 3 C -0.17 -3.00 9.41 22.32 0.21 -2.79 16 4 C 0.00 0.02 5.95 -19.42 -0.12 -0.10 16 5 C -0.12 -2.65 9.69 71.24 0.69 -1.96 16 6 C -0.21 -6.48 3.74 -19.91 -0.07 -6.55 16 7 C 0.57 21.60 5.31 86.69 0.46 22.06 16 8 O -0.59 -25.80 16.57 -3.99 -0.07 -25.86 16 9 N -0.58 -22.75 2.24 -817.80 -1.83 -24.58 16 10 C 0.11 4.13 5.83 86.69 0.51 4.64 16 11 C 0.13 5.11 4.32 45.60 0.20 5.31 16 12 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 13 C -0.12 -4.20 6.18 31.55 0.20 -4.00 16 14 C -0.12 -4.98 6.18 31.56 0.20 -4.79 16 15 C 0.17 7.96 3.12 45.50 0.14 8.10 16 16 H 0.08 4.57 6.36 -2.38 -0.02 4.55 16 17 C 0.13 5.91 5.82 86.59 0.50 6.41 16 18 N -0.60 -29.14 2.81 -635.72 -1.79 -30.93 16 19 C -0.23 -12.38 10.37 84.03 0.87 -11.51 16 20 H 0.08 4.08 7.85 -2.91 -0.02 4.06 16 21 C -0.05 -2.85 5.42 84.86 0.46 -2.39 16 22 N -0.94 -53.34 10.44 21.65 0.23 -53.11 16 23 Si 0.97 44.28 29.56 68.60 2.03 46.31 16 24 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 25 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C 0.35 9.91 7.55 85.13 0.64 10.56 16 28 O -0.48 -13.49 11.16 -87.31 -0.97 -14.46 16 29 N -0.52 -13.41 10.28 -296.05 -3.04 -16.45 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.11 0.50 8.07 -2.38 -0.02 0.48 16 32 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.18 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.11 1.65 8.10 -2.39 -0.02 1.63 16 36 H 0.04 1.29 7.19 -2.38 -0.02 1.27 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.67 6.30 -2.39 -0.02 2.66 16 39 H 0.08 2.78 5.90 -2.39 -0.01 2.77 16 40 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 41 H 0.05 2.17 7.84 -2.39 -0.02 2.15 16 42 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 43 H 0.06 2.86 7.11 -2.39 -0.02 2.84 16 44 H 0.05 2.43 7.86 -2.39 -0.02 2.41 16 45 H 0.25 13.90 8.31 -92.71 -0.77 13.13 16 46 H 0.42 8.54 9.06 -74.06 -0.67 7.87 16 Total: -1.00 -70.11 365.22 0.79 -69.32 By element: Atomic # 1 Polarization: 23.46 SS G_CDS: 0.34 Total: 23.80 kcal Atomic # 6 Polarization: 20.07 SS G_CDS: 5.90 Total: 25.96 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.44 Total: -125.07 kcal Atomic # 8 Polarization: -39.29 SS G_CDS: -1.04 Total: -40.33 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -70.11 0.79 -69.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029415148.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.576 kcal (2) G-P(sol) polarization free energy of solvation -70.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds