Wall clock time and date at job start Tue Mar 31 2020 16:05:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00433 * 2 1 4 4 C 1.38899 * 119.62615 * 180.29609 * 3 2 1 5 5 C 1.39575 * 118.94768 * 180.22672 * 4 3 2 6 6 C 1.48157 * 120.89268 * 179.75226 * 5 4 3 7 7 O 1.21508 * 119.99834 * 134.04093 * 6 5 4 8 8 N 1.34779 * 119.99913 * 314.04601 * 6 5 4 9 9 C 1.47273 * 120.77403 * 183.79337 * 8 6 5 10 10 C 1.53886 * 108.05649 * 132.72921 * 9 8 6 11 11 H 1.08999 * 112.58135 * 182.22563 * 10 9 8 12 12 C 1.54553 * 107.83276 * 306.51288 * 10 9 8 13 13 C 1.55860 * 105.00175 * 89.05545 * 12 10 9 14 14 C 1.54545 * 104.09349 * 0.02562 * 13 12 10 15 15 H 1.09001 * 112.17834 * 146.81017 * 14 13 12 16 16 C 1.47156 * 120.71136 * 3.74409 * 8 6 5 17 17 N 1.48314 * 104.90982 * 24.75661 * 14 13 12 18 18 C 1.36932 * 128.07880 * 138.86139 * 17 14 13 19 19 H 1.08002 * 120.00041 * 346.47610 * 18 17 14 20 20 C 1.38815 * 119.99761 * 166.47183 * 18 17 14 21 21 N 1.31614 * 120.00178 * 350.33965 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 170.33840 * 20 18 17 23 23 H 1.48504 * 109.47384 * 89.99785 * 22 20 18 24 24 H 1.48494 * 109.47180 * 209.99756 * 22 20 18 25 25 H 1.48503 * 109.47237 * 330.00229 * 22 20 18 26 26 C 1.39973 * 118.21474 * 359.48534 * 5 4 3 27 27 C 1.37971 * 119.13380 * 0.26959 * 26 5 4 28 28 C 1.50703 * 119.51152 * 180.02562 * 27 26 5 29 29 N 1.31913 * 120.98123 * 359.97438 * 27 26 5 30 30 H 1.09006 * 109.46495 * 60.00235 * 1 2 3 31 31 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46897 * 300.00718 * 1 2 3 33 33 H 1.07997 * 120.52619 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.73023 * 13.09415 * 9 8 6 35 35 H 1.08993 * 109.74339 * 252.37581 * 9 8 6 36 36 H 1.09000 * 110.36472 * 207.91194 * 12 10 9 37 37 H 1.09001 * 110.35839 * 330.11839 * 12 10 9 38 38 H 1.08996 * 110.90027 * 241.33702 * 13 12 10 39 39 H 1.08990 * 110.54723 * 118.52643 * 13 12 10 40 40 H 1.09000 * 109.75324 * 107.61946 * 16 8 6 41 41 H 1.08997 * 109.75390 * 346.93314 * 16 8 6 42 42 H 0.96998 * 119.99658 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.42939 * 180.25030 * 26 5 4 44 44 H 1.09000 * 109.46777 * 90.00123 * 28 27 26 45 45 H 1.08999 * 109.47467 * 210.00324 * 28 27 26 46 46 H 1.08999 * 109.47128 * 330.00269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 -0.0062 5 6 4.0516 2.5234 -0.0013 6 6 5.5285 2.6413 -0.0021 7 8 6.0751 3.4222 -0.7557 8 7 6.2656 1.8824 0.8328 9 6 7.7276 2.0443 0.9057 10 6 8.1260 2.1165 2.3904 11 1 9.1953 2.2759 2.5295 12 6 7.2794 3.2261 3.0542 13 6 5.9839 2.5088 3.5404 14 6 6.1876 1.0364 3.1171 15 1 5.7311 0.3393 3.8198 16 6 5.6267 0.8738 1.6931 17 7 7.6582 0.8638 3.0321 18 6 8.4087 -0.2034 3.4479 19 1 7.9719 -0.9527 4.0915 20 6 9.7309 -0.3222 3.0421 21 7 10.2085 0.4778 2.1126 22 14 10.8324 -1.6176 3.8155 23 1 10.7393 -2.8771 3.0343 24 1 12.2375 -1.1373 3.8145 25 1 10.3959 -1.8685 5.2126 26 6 3.2396 3.6635 -0.0013 27 6 1.8683 3.5115 -0.0005 28 6 0.9860 4.7333 -0.0011 29 7 1.3180 2.3127 -0.0002 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 4.0231 0.3682 -0.0107 34 1 8.0215 2.9642 0.4003 35 1 8.2164 1.1918 0.4342 36 1 7.8142 3.6559 3.9011 37 1 7.0341 4.0015 2.3283 38 1 5.1025 2.9252 3.0528 39 1 5.8895 2.5823 4.6237 40 1 5.8529 -0.1251 1.3201 41 1 4.5477 1.0277 1.7025 42 1 11.1322 0.3945 1.8288 43 1 3.6808 4.6493 -0.0017 44 1 0.7728 5.0269 -1.0289 45 1 0.0520 4.5073 0.5135 46 1 1.4951 5.5493 0.5117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029441936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:36 Heat of formation + Delta-G solvation = 11.660239 kcal Electronic energy + Delta-G solvation = -29689.738969 eV Core-core repulsion = 25774.246913 eV Total energy + Delta-G solvation = -3915.492057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.06064 -39.84952 -38.26465 -37.55754 -34.15477 -33.03783 -32.32093 -31.87720 -30.55110 -29.26773 -28.51434 -26.82336 -26.47472 -24.44534 -23.94208 -22.98256 -22.68583 -20.02322 -19.73093 -18.87407 -18.16261 -16.95163 -16.88874 -16.21984 -16.00833 -15.94228 -15.40285 -15.10506 -14.69164 -14.41790 -14.21370 -13.79294 -13.62500 -13.57655 -13.10402 -12.91884 -12.79201 -12.63033 -12.54197 -12.25054 -11.89055 -11.85527 -11.68694 -11.61754 -11.20941 -11.07987 -10.90992 -10.84325 -10.38709 -10.13183 -10.04419 -9.92507 -9.87811 -9.71001 -9.59948 -9.30131 -8.85235 -8.50986 -8.15307 -6.90349 -5.87165 -3.22451 0.80719 1.04739 2.82906 3.03021 3.33823 3.37989 3.40891 3.41718 3.69455 4.00089 4.38279 4.54880 4.82596 4.93180 5.02331 5.09342 5.14275 5.14347 5.27162 5.29144 5.38205 5.40813 5.46200 5.54027 5.64516 5.71696 5.74626 5.77423 5.79900 5.89987 6.05305 6.15596 6.21124 6.27827 6.34401 6.47469 6.57769 6.62989 6.73879 6.80851 6.89419 7.08362 7.22552 7.45191 7.65052 7.69860 7.91688 8.09692 8.48679 9.01907 9.64256 10.39589 11.25453 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.003609 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.419310 B = 7756.263669 C = 8479.132293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.305 6.305 3 C 0.322 3.678 4 C -0.167 4.167 5 C -0.030 4.030 6 C 0.548 3.452 7 O -0.544 6.544 8 N -0.577 5.577 9 C 0.112 3.888 10 C 0.167 3.833 11 H 0.124 0.876 12 C -0.136 4.136 13 C -0.124 4.124 14 C 0.134 3.866 15 H 0.079 0.921 16 C 0.082 3.918 17 N -0.583 5.583 18 C -0.227 4.227 19 H 0.077 0.923 20 C -0.003 4.003 21 N -0.914 5.914 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C -0.163 4.163 27 C 0.162 3.838 28 C -0.102 4.102 29 N -0.533 5.533 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.150 0.850 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.256 0.744 43 H 0.144 0.856 44 H 0.080 0.920 45 H 0.077 0.923 46 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.822 4.730 -2.225 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.212 6.212 3 C 0.143 3.857 4 C -0.188 4.188 5 C -0.041 4.041 6 C 0.334 3.666 7 O -0.423 6.423 8 N -0.307 5.307 9 C -0.011 4.011 10 C 0.059 3.941 11 H 0.142 0.858 12 C -0.175 4.175 13 C -0.163 4.163 14 C 0.025 3.975 15 H 0.097 0.903 16 C -0.043 4.043 17 N -0.304 5.304 18 C -0.355 4.355 19 H 0.095 0.905 20 C -0.200 4.200 21 N -0.560 5.560 22 Si 0.743 3.257 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.184 4.184 27 C 0.026 3.974 28 C -0.159 4.159 29 N -0.259 5.259 30 H 0.076 0.924 31 H 0.113 0.887 32 H 0.077 0.923 33 H 0.168 0.832 34 H 0.089 0.911 35 H 0.100 0.900 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.075 0.925 40 H 0.088 0.912 41 H 0.093 0.907 42 H 0.066 0.934 43 H 0.161 0.839 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.012 4.624 -2.596 18.777 hybrid contribution 1.158 -0.712 0.261 1.384 sum -16.855 3.913 -2.335 17.460 Atomic orbital electron populations 1.22845 0.77280 1.02893 1.02360 1.86269 1.22845 1.24210 1.87882 1.19567 0.88879 0.84601 0.92655 1.21305 0.92208 0.98892 1.06425 1.20259 0.94718 0.93025 0.96055 1.18113 0.85510 0.81514 0.81451 1.90755 1.72356 1.38743 1.40480 1.48220 1.09107 1.35377 1.37989 1.22566 0.75906 1.02062 1.00555 1.21967 0.99802 0.84119 0.88188 0.85829 1.22922 0.96546 0.98434 0.99644 1.22744 0.97200 0.96713 0.99675 1.21937 0.87630 0.95053 0.92869 0.90336 1.22935 0.96355 0.91469 0.93526 1.45188 0.99132 1.16074 1.70037 1.19001 0.92878 1.00348 1.23299 0.90483 1.24809 0.97942 0.99251 0.97968 1.69814 1.15277 1.40322 1.30555 0.86127 0.80047 0.80777 0.78792 1.21562 1.21588 1.20681 1.21805 0.93283 0.99347 1.03992 1.20812 0.91556 0.91828 0.93175 1.20734 0.99023 0.92854 1.03328 1.66954 1.41129 0.98414 1.19362 0.92411 0.88651 0.92283 0.83212 0.91076 0.89956 0.92687 0.92930 0.93030 0.92507 0.91177 0.90745 0.93415 0.83860 0.90128 0.90399 0.90216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.38 101.05 1.05 1.42 16 2 O -0.31 -3.85 10.47 -18.74 -0.20 -4.04 16 3 C 0.32 4.42 7.49 -17.16 -0.13 4.29 16 4 C -0.17 -2.41 7.41 -38.84 -0.29 -2.70 16 5 C -0.03 -0.46 5.13 -104.68 -0.54 -1.00 16 6 C 0.55 10.17 7.35 -12.19 -0.09 10.08 16 7 O -0.54 -11.62 16.51 5.36 0.09 -11.54 16 8 N -0.58 -10.96 2.26 -172.43 -0.39 -11.35 16 9 C 0.11 2.41 5.82 -3.16 -0.02 2.39 16 10 C 0.17 3.71 3.14 -65.65 -0.21 3.50 16 11 H 0.12 3.12 6.27 -51.93 -0.33 2.80 16 12 C -0.14 -2.59 6.22 -24.39 -0.15 -2.74 16 13 C -0.12 -2.16 6.31 -24.39 -0.15 -2.31 16 14 C 0.13 2.54 4.27 -65.65 -0.28 2.26 16 15 H 0.08 1.42 8.14 -51.93 -0.42 0.99 16 16 C 0.08 1.44 4.52 -3.21 -0.01 1.43 16 17 N -0.58 -13.54 2.82 -152.56 -0.43 -13.97 16 18 C -0.23 -5.83 10.38 -15.06 -0.16 -5.99 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.51 16 20 C 0.00 -0.07 5.42 -17.43 -0.09 -0.16 16 21 N -0.91 -24.70 10.48 55.49 0.58 -24.12 16 22 Si 0.91 20.96 29.56 -169.99 -5.03 15.94 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 C -0.16 -2.19 9.44 -39.03 -0.37 -2.56 16 27 C 0.16 1.94 6.77 -82.65 -0.56 1.38 16 28 C -0.10 -0.83 10.16 36.01 0.37 -0.46 16 29 N -0.53 -6.93 9.09 -9.59 -0.09 -7.02 16 30 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 31 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.15 2.12 6.74 -52.49 -0.35 1.77 16 34 H 0.07 1.54 7.15 -51.93 -0.37 1.17 16 35 H 0.08 2.02 7.94 -51.93 -0.41 1.60 16 36 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.05 0.97 7.84 -51.93 -0.41 0.57 16 38 H 0.05 0.83 7.84 -51.93 -0.41 0.43 16 39 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 41 H 0.07 1.14 4.73 -51.93 -0.25 0.90 16 42 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 43 H 0.14 1.78 8.06 -52.49 -0.42 1.35 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 LS Contribution 366.73 15.07 5.53 5.53 Total: -1.00 -29.76 366.73 -8.28 -38.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -6.71 Total: 3.71 kcal Atomic # 6 Polarization: 10.46 SS G_CDS: -1.63 Total: 8.83 kcal Atomic # 7 Polarization: -56.13 SS G_CDS: -0.32 Total: -56.46 kcal Atomic # 8 Polarization: -15.47 SS G_CDS: -0.11 Total: -15.58 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.03 Total: 15.94 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -29.76 -8.28 -38.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029441936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.694 kcal (2) G-P(sol) polarization free energy of solvation -29.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds