Wall clock time and date at job start Tue Mar 31 2020 16:05:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35679 * 117.00433 * 2 1 4 4 C 1.38899 * 119.62615 * 180.29609 * 3 2 1 5 5 C 1.39575 * 118.94768 * 180.22672 * 4 3 2 6 6 C 1.48157 * 120.89268 * 179.75226 * 5 4 3 7 7 O 1.21508 * 119.99834 * 134.04093 * 6 5 4 8 8 N 1.34779 * 119.99913 * 314.04601 * 6 5 4 9 9 C 1.47273 * 120.77403 * 183.79337 * 8 6 5 10 10 C 1.53886 * 108.05649 * 132.72921 * 9 8 6 11 11 H 1.08999 * 112.58135 * 182.22563 * 10 9 8 12 12 C 1.54553 * 107.83276 * 306.51288 * 10 9 8 13 13 C 1.55860 * 105.00175 * 89.05545 * 12 10 9 14 14 C 1.54545 * 104.09349 * 0.02562 * 13 12 10 15 15 H 1.09001 * 112.17834 * 146.81017 * 14 13 12 16 16 C 1.47156 * 120.71136 * 3.74409 * 8 6 5 17 17 N 1.48314 * 104.90982 * 24.75661 * 14 13 12 18 18 C 1.36932 * 128.07880 * 138.86139 * 17 14 13 19 19 H 1.08002 * 120.00041 * 346.47610 * 18 17 14 20 20 C 1.38815 * 119.99761 * 166.47183 * 18 17 14 21 21 N 1.31614 * 120.00178 * 350.33965 * 20 18 17 22 22 Si 1.86801 * 119.99803 * 170.33840 * 20 18 17 23 23 H 1.48504 * 109.47384 * 89.99785 * 22 20 18 24 24 H 1.48494 * 109.47180 * 209.99756 * 22 20 18 25 25 H 1.48503 * 109.47237 * 330.00229 * 22 20 18 26 26 C 1.39973 * 118.21474 * 359.48534 * 5 4 3 27 27 C 1.37971 * 119.13380 * 0.26959 * 26 5 4 28 28 C 1.50703 * 119.51152 * 180.02562 * 27 26 5 29 29 N 1.31913 * 120.98123 * 359.97438 * 27 26 5 30 30 H 1.09006 * 109.46495 * 60.00235 * 1 2 3 31 31 H 1.08999 * 109.47326 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46897 * 300.00718 * 1 2 3 33 33 H 1.07997 * 120.52619 * 359.97438 * 4 3 2 34 34 H 1.08998 * 109.73023 * 13.09415 * 9 8 6 35 35 H 1.08993 * 109.74339 * 252.37581 * 9 8 6 36 36 H 1.09000 * 110.36472 * 207.91194 * 12 10 9 37 37 H 1.09001 * 110.35839 * 330.11839 * 12 10 9 38 38 H 1.08996 * 110.90027 * 241.33702 * 13 12 10 39 39 H 1.08990 * 110.54723 * 118.52643 * 13 12 10 40 40 H 1.09000 * 109.75324 * 107.61946 * 16 8 6 41 41 H 1.08997 * 109.75390 * 346.93314 * 16 8 6 42 42 H 0.96998 * 119.99658 * 180.02562 * 21 20 18 43 43 H 1.07997 * 120.42939 * 180.25030 * 26 5 4 44 44 H 1.09000 * 109.46777 * 90.00123 * 28 27 26 45 45 H 1.08999 * 109.47467 * 210.00324 * 28 27 26 46 46 H 1.08999 * 109.47128 * 330.00269 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2089 0.0000 4 6 3.4326 1.2724 -0.0062 5 6 4.0516 2.5234 -0.0013 6 6 5.5285 2.6413 -0.0021 7 8 6.0751 3.4222 -0.7557 8 7 6.2656 1.8824 0.8328 9 6 7.7276 2.0443 0.9057 10 6 8.1260 2.1165 2.3904 11 1 9.1953 2.2759 2.5295 12 6 7.2794 3.2261 3.0542 13 6 5.9839 2.5088 3.5404 14 6 6.1876 1.0364 3.1171 15 1 5.7311 0.3393 3.8198 16 6 5.6267 0.8738 1.6931 17 7 7.6582 0.8638 3.0321 18 6 8.4087 -0.2034 3.4479 19 1 7.9719 -0.9527 4.0915 20 6 9.7309 -0.3222 3.0421 21 7 10.2085 0.4778 2.1126 22 14 10.8324 -1.6176 3.8155 23 1 10.7393 -2.8771 3.0343 24 1 12.2375 -1.1373 3.8145 25 1 10.3959 -1.8685 5.2126 26 6 3.2396 3.6635 -0.0013 27 6 1.8683 3.5115 -0.0005 28 6 0.9860 4.7333 -0.0011 29 7 1.3180 2.3127 -0.0002 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5140 0.8899 33 1 4.0231 0.3682 -0.0107 34 1 8.0215 2.9642 0.4003 35 1 8.2164 1.1918 0.4342 36 1 7.8142 3.6559 3.9011 37 1 7.0341 4.0015 2.3283 38 1 5.1025 2.9252 3.0528 39 1 5.8895 2.5823 4.6237 40 1 5.8529 -0.1251 1.3201 41 1 4.5477 1.0277 1.7025 42 1 11.1322 0.3945 1.8288 43 1 3.6808 4.6493 -0.0017 44 1 0.7728 5.0269 -1.0289 45 1 0.0520 4.5073 0.5135 46 1 1.4951 5.5493 0.5117 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029441936.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:35 Heat of formation + Delta-G solvation = -6.658759 kcal Electronic energy + Delta-G solvation = -29690.533341 eV Core-core repulsion = 25774.246913 eV Total energy + Delta-G solvation = -3916.286428 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.24942 -41.21781 -39.56141 -38.79453 -35.70919 -34.45012 -33.93345 -32.83808 -32.13597 -31.03931 -29.32993 -28.10656 -27.60387 -26.02037 -25.54724 -24.36400 -23.72608 -21.43998 -21.30567 -20.46176 -19.38866 -18.42655 -18.05761 -17.54062 -17.19561 -17.02484 -16.85987 -16.54371 -16.52268 -15.60175 -15.36318 -15.09162 -14.89239 -14.77939 -14.66493 -14.40692 -14.32756 -13.58972 -13.47782 -13.37174 -13.26251 -13.17316 -13.00558 -12.88459 -12.74016 -12.64955 -12.59581 -12.03074 -11.98362 -11.85374 -11.56874 -11.50262 -11.37857 -11.18634 -10.94023 -10.78280 -10.56788 -9.85758 -9.48729 -8.75075 -7.84758 -5.20308 -0.31827 0.02852 1.49287 1.51025 1.54118 1.59091 1.83765 2.09889 2.50835 2.60194 3.08113 3.28950 3.34949 3.48126 3.81635 3.88702 4.02215 4.03694 4.07857 4.20879 4.28896 4.32659 4.41160 4.43358 4.47729 4.50609 4.59436 4.67595 4.78049 4.79448 4.82823 4.89959 4.93798 4.98104 5.01304 5.04222 5.06042 5.10336 5.22338 5.35146 5.38628 5.51555 5.55385 5.78552 6.15896 6.21739 6.40255 6.70706 6.96879 7.05818 7.72402 8.50191 9.26442 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.017437 B = 0.003609 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.419310 B = 7756.263669 C = 8479.132293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.317 6.317 3 C 0.321 3.679 4 C -0.178 4.178 5 C -0.042 4.042 6 C 0.552 3.448 7 O -0.577 6.577 8 N -0.578 5.578 9 C 0.127 3.873 10 C 0.165 3.835 11 H 0.088 0.912 12 C -0.128 4.128 13 C -0.112 4.112 14 C 0.127 3.873 15 H 0.093 0.907 16 C 0.092 3.908 17 N -0.603 5.603 18 C -0.232 4.232 19 H 0.082 0.918 20 C -0.055 4.055 21 N -0.938 5.938 22 Si 0.971 3.029 23 H -0.291 1.291 24 H -0.298 1.298 25 H -0.271 1.271 26 C -0.166 4.166 27 C 0.171 3.829 28 C -0.100 4.100 29 N -0.532 5.532 30 H 0.059 0.941 31 H 0.121 0.879 32 H 0.062 0.938 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.044 0.956 36 H 0.058 0.942 37 H 0.056 0.944 38 H 0.070 0.930 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.104 0.896 42 H 0.247 0.753 43 H 0.153 0.847 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.167 5.224 -1.338 21.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.142 3.858 4 C -0.199 4.199 5 C -0.053 4.053 6 C 0.340 3.660 7 O -0.458 6.458 8 N -0.308 5.308 9 C 0.003 3.997 10 C 0.057 3.943 11 H 0.105 0.895 12 C -0.167 4.167 13 C -0.151 4.151 14 C 0.020 3.980 15 H 0.111 0.889 16 C -0.033 4.033 17 N -0.324 5.324 18 C -0.361 4.361 19 H 0.100 0.900 20 C -0.249 4.249 21 N -0.586 5.586 22 Si 0.801 3.199 23 H -0.218 1.218 24 H -0.225 1.225 25 H -0.196 1.196 26 C -0.187 4.187 27 C 0.034 3.966 28 C -0.157 4.157 29 N -0.258 5.258 30 H 0.078 0.922 31 H 0.139 0.861 32 H 0.081 0.919 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.075 0.925 41 H 0.122 0.878 42 H 0.057 0.943 43 H 0.171 0.829 44 H 0.113 0.887 45 H 0.106 0.894 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -21.416 5.104 -1.691 22.081 hybrid contribution 2.065 -0.856 -0.070 2.237 sum -19.351 4.248 -1.761 19.890 Atomic orbital electron populations 1.23118 0.75316 1.04791 1.02615 1.86261 1.24807 1.23734 1.87553 1.19612 0.88679 0.85277 0.92194 1.21217 0.92849 0.98322 1.07502 1.19969 0.92478 0.94420 0.98386 1.18551 0.86889 0.80355 0.80231 1.90731 1.73449 1.40042 1.41556 1.48165 1.07972 1.36013 1.38643 1.22099 0.77714 0.99901 0.99954 1.21789 0.98497 0.85320 0.88671 0.89459 1.22796 0.96960 0.97401 0.99540 1.22674 0.96698 0.94928 1.00755 1.22203 0.85281 0.96637 0.93893 0.88903 1.22890 0.97744 0.90391 0.92232 1.45361 1.01162 1.15820 1.70082 1.19319 0.93280 1.00780 1.22673 0.89984 1.25497 0.99301 1.01278 0.98824 1.70009 1.14811 1.41869 1.31920 0.85198 0.77913 0.78472 0.78352 1.21801 1.22506 1.19629 1.21991 0.93851 0.99044 1.03815 1.21423 0.91478 0.92725 0.90961 1.20877 0.98790 0.91419 1.04641 1.67104 1.40915 0.98554 1.19216 0.92186 0.86066 0.91906 0.83585 0.91836 0.93769 0.92346 0.92500 0.91110 0.90966 0.92543 0.87772 0.94343 0.82911 0.88674 0.89412 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.72 16 2 O -0.32 -7.30 10.47 -89.96 -0.94 -8.25 16 3 C 0.32 8.13 7.49 84.80 0.63 8.76 16 4 C -0.18 -4.89 7.41 22.75 0.17 -4.72 16 5 C -0.04 -1.24 5.13 -19.90 -0.10 -1.35 16 6 C 0.55 20.38 7.35 86.88 0.64 21.02 16 7 O -0.58 -24.91 16.51 -3.74 -0.06 -24.97 16 8 N -0.58 -22.15 2.26 -817.75 -1.85 -24.00 16 9 C 0.13 5.75 5.82 86.53 0.50 6.25 16 10 C 0.16 7.55 3.14 45.47 0.14 7.69 16 11 H 0.09 4.65 6.27 -2.39 -0.01 4.64 16 12 C -0.13 -4.78 6.22 32.11 0.20 -4.58 16 13 C -0.11 -3.62 6.31 32.11 0.20 -3.41 16 14 C 0.13 4.67 4.27 45.47 0.19 4.86 16 15 H 0.09 3.15 8.14 -2.39 -0.02 3.13 16 16 C 0.09 3.14 4.52 86.56 0.39 3.53 16 17 N -0.60 -28.21 2.82 -636.60 -1.79 -30.00 16 18 C -0.23 -12.01 10.38 84.03 0.87 -11.14 16 19 H 0.08 4.07 7.85 -2.91 -0.02 4.05 16 20 C -0.05 -2.93 5.42 84.86 0.46 -2.47 16 21 N -0.94 -53.04 10.48 21.65 0.23 -52.82 16 22 Si 0.97 43.98 29.56 68.60 2.03 46.01 16 23 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C -0.17 -4.07 9.44 22.63 0.21 -3.86 16 27 C 0.17 3.54 6.77 42.48 0.29 3.83 16 28 C -0.10 -1.22 10.16 71.24 0.72 -0.49 16 29 N -0.53 -12.29 9.09 -297.17 -2.70 -14.99 16 30 H 0.06 0.89 8.10 -2.38 -0.02 0.87 16 31 H 0.12 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.15 4.05 6.74 -2.91 -0.02 4.03 16 34 H 0.06 2.91 7.15 -2.39 -0.02 2.89 16 35 H 0.04 2.31 7.94 -2.39 -0.02 2.29 16 36 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 37 H 0.06 2.06 7.84 -2.39 -0.02 2.04 16 38 H 0.07 2.05 7.84 -2.39 -0.02 2.03 16 39 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 41 H 0.10 3.00 4.73 -2.39 -0.01 2.99 16 42 H 0.25 13.83 8.31 -92.71 -0.77 13.06 16 43 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 44 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 46 H 0.10 0.88 8.07 -2.39 -0.02 0.86 16 Total: -1.00 -66.02 366.73 2.61 -63.41 By element: Atomic # 1 Polarization: 18.97 SS G_CDS: 0.99 Total: 19.96 kcal Atomic # 6 Polarization: 18.94 SS G_CDS: 6.71 Total: 25.65 kcal Atomic # 7 Polarization: -115.69 SS G_CDS: -6.12 Total: -121.81 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -1.00 Total: -33.22 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.02 2.61 -63.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029441936.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.752 kcal (2) G-P(sol) polarization free energy of solvation -66.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds