Wall clock time and date at job start Tue Mar 31 2020 16:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35427 * 117.00087 * 2 1 4 4 N 1.32240 * 119.79968 * 0.24900 * 3 2 1 5 5 C 1.31873 * 121.80074 * 180.29125 * 4 3 2 6 6 C 1.50708 * 119.40883 * 179.72124 * 5 4 3 7 7 C 1.38361 * 121.19126 * 359.74277 * 5 4 3 8 8 C 1.38344 * 119.45288 * 359.97438 * 7 5 4 9 9 C 1.39992 * 118.34885 * 0.02562 * 8 7 5 10 10 C 1.47515 * 120.59732 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00309 * 129.17773 * 10 9 8 12 12 N 1.34777 * 120.00095 * 309.18014 * 10 9 8 13 13 C 1.47163 * 120.71598 * 184.19643 * 12 10 9 14 14 C 1.53882 * 108.02897 * 132.74899 * 13 12 10 15 15 H 1.08999 * 112.57484 * 182.22556 * 14 13 12 16 16 C 1.54127 * 107.71337 * 306.33093 * 14 13 12 17 17 C 1.54280 * 104.89168 * 89.41205 * 16 14 13 18 18 C 1.54537 * 104.84580 * 359.80704 * 17 16 14 19 19 H 1.09002 * 112.18042 * 146.41267 * 18 17 16 20 20 C 1.49250 * 120.76652 * 4.28077 * 12 10 9 21 21 N 1.48304 * 107.20805 * 58.36990 * 14 13 12 22 22 C 1.36941 * 128.08050 * 106.70170 * 21 14 13 23 23 H 1.08000 * 120.00027 * 160.13072 * 22 21 14 24 24 C 1.38808 * 119.99713 * 340.12276 * 22 21 14 25 25 N 1.31625 * 119.99881 * 353.30569 * 24 22 21 26 26 Si 1.86797 * 119.99856 * 173.30314 * 24 22 21 27 27 H 1.48506 * 109.46901 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47139 * 299.99686 * 26 24 22 29 29 H 1.48497 * 109.47416 * 60.00239 * 26 24 22 30 30 H 1.09001 * 109.47249 * 300.00205 * 1 2 3 31 31 H 1.08999 * 109.47188 * 60.00279 * 1 2 3 32 32 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47088 * 270.02460 * 6 5 4 34 34 H 1.09005 * 109.46561 * 30.02366 * 6 5 4 35 35 H 1.08998 * 109.47174 * 150.01940 * 6 5 4 36 36 H 1.07994 * 120.27675 * 179.97438 * 7 5 4 37 37 H 1.07998 * 120.82530 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.74251 * 13.12142 * 13 12 10 39 39 H 1.08994 * 109.75099 * 252.38903 * 13 12 10 40 40 H 1.09006 * 110.50433 * 330.47132 * 16 14 13 41 41 H 1.09004 * 110.27806 * 208.23513 * 16 14 13 42 42 H 1.08998 * 110.36287 * 240.96322 * 17 16 14 43 43 H 1.09002 * 110.36286 * 118.65186 * 17 16 14 44 44 H 1.09000 * 110.51834 * 107.81871 * 20 12 10 45 45 H 1.09005 * 109.74793 * 346.59728 * 20 12 10 46 46 H 0.97005 * 119.99786 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0050 5 6 1.8770 3.5084 -0.0005 6 6 0.9998 4.7339 -0.0008 7 6 3.2525 3.6576 -0.0065 8 6 4.0587 2.5334 -0.0062 9 6 3.4449 1.2752 -0.0003 10 6 4.2569 0.0436 0.0009 11 8 4.0389 -0.8276 0.8205 12 7 5.2405 -0.1159 -0.9066 13 6 5.9993 -1.3747 -0.9792 14 6 6.0712 -1.8030 -2.4555 15 1 6.5877 -2.7533 -2.5908 16 6 4.6311 -1.8422 -3.0031 17 6 4.3718 -0.4190 -3.5391 18 6 5.6810 0.3535 -3.2611 19 1 5.8909 1.0976 -4.0294 20 6 5.5859 0.9802 -1.8589 21 7 6.7237 -0.6995 -3.2012 22 6 7.9910 -0.6636 -3.7188 23 1 8.2364 0.0432 -4.4977 24 6 8.9603 -1.5354 -3.2422 25 7 8.7015 -2.3044 -2.2058 26 14 10.6319 -1.6174 -4.0719 27 1 11.4802 -2.6196 -3.3781 28 1 10.4605 -2.0136 -5.4927 29 1 11.2839 -0.2849 -4.0047 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7842 5.0261 -1.0284 34 1 0.0667 4.5129 0.5176 35 1 1.5141 5.5489 0.5085 36 1 3.6932 4.6435 -0.0114 37 1 5.1349 2.6241 -0.0112 38 1 5.4926 -2.1442 -0.3967 39 1 7.0060 -1.2209 -0.5908 40 1 3.9262 -2.0820 -2.2068 41 1 4.5533 -2.5714 -3.8096 42 1 3.5395 0.0411 -3.0066 43 1 4.1685 -0.4481 -4.6097 44 1 6.5414 1.4316 -1.5915 45 1 4.8032 1.7388 -1.8468 46 1 9.3788 -2.9140 -1.8730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029506010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:40 Heat of formation + Delta-G solvation = 10.721912 kcal Electronic energy + Delta-G solvation = -30078.554210 eV Core-core repulsion = 26163.021465 eV Total energy + Delta-G solvation = -3915.532746 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.99539 -39.57760 -38.06296 -37.57924 -33.89827 -32.96292 -32.28156 -31.84160 -30.53052 -29.26662 -28.58044 -27.14939 -25.93989 -23.98162 -23.83579 -22.91586 -22.60900 -20.15565 -19.62346 -18.79589 -18.15258 -17.29454 -16.86065 -16.19770 -16.09828 -15.27952 -15.18205 -14.69211 -14.66029 -14.32644 -14.21875 -13.75927 -13.63650 -13.35224 -13.01572 -12.96677 -12.71768 -12.59716 -12.55323 -12.24379 -11.83367 -11.80396 -11.59820 -11.58053 -11.13239 -11.00454 -10.86698 -10.81784 -10.34080 -10.04990 -9.99060 -9.90738 -9.84403 -9.66017 -9.54150 -9.18011 -8.73753 -8.44637 -8.01845 -6.79454 -5.85777 -3.23540 0.80467 1.19552 3.00280 3.15374 3.35052 3.40354 3.41433 3.49379 3.76821 4.03574 4.40612 4.57879 4.78444 4.93141 5.09013 5.16760 5.22112 5.26306 5.28104 5.31728 5.33532 5.35127 5.55952 5.61498 5.69620 5.73102 5.76945 5.83540 5.86237 5.96547 5.98092 6.21858 6.30262 6.34807 6.43780 6.55609 6.66589 6.72896 6.82660 6.89052 7.01031 7.20213 7.33293 7.50813 7.69461 7.71887 8.08271 8.14351 8.73984 9.04495 9.66311 10.45411 11.27709 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003722 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.266457 B = 7520.370172 C = 8016.060483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.286 6.286 3 C 0.366 3.634 4 N -0.544 5.544 5 C 0.178 3.822 6 C -0.105 4.105 7 C -0.217 4.217 8 C -0.009 4.009 9 C -0.193 4.193 10 C 0.561 3.439 11 O -0.542 6.542 12 N -0.587 5.587 13 C 0.115 3.885 14 C 0.172 3.828 15 H 0.112 0.888 16 C -0.136 4.136 17 C -0.121 4.121 18 C 0.133 3.867 19 H 0.077 0.923 20 C 0.092 3.908 21 N -0.583 5.583 22 C -0.231 4.231 23 H 0.074 0.926 24 C 0.002 3.998 25 N -0.910 5.910 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.141 0.859 37 H 0.147 0.853 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.054 0.946 41 H 0.052 0.948 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.236 11.927 2.564 18.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.190 6.190 3 C 0.186 3.814 4 N -0.269 5.269 5 C 0.040 3.960 6 C -0.162 4.162 7 C -0.237 4.237 8 C -0.034 4.034 9 C -0.199 4.199 10 C 0.347 3.653 11 O -0.421 6.421 12 N -0.319 5.319 13 C -0.008 4.008 14 C 0.064 3.936 15 H 0.130 0.870 16 C -0.176 4.176 17 C -0.160 4.160 18 C 0.025 3.975 19 H 0.095 0.905 20 C -0.033 4.033 21 N -0.304 5.304 22 C -0.359 4.359 23 H 0.092 0.908 24 C -0.196 4.196 25 N -0.555 5.555 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.211 1.211 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.115 0.885 33 H 0.100 0.900 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.159 0.841 37 H 0.165 0.835 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.855 10.940 3.003 18.691 hybrid contribution 1.563 0.206 -0.375 1.620 sum -13.292 11.146 2.628 17.544 Atomic orbital electron populations 1.22887 0.77425 1.03106 1.02142 1.86391 1.22567 1.23652 1.86432 1.19647 0.87905 0.84722 0.89133 1.67177 1.40327 0.98191 1.21237 1.21059 0.92105 0.91846 0.90945 1.20771 0.99238 0.92842 1.03356 1.21695 0.93794 0.99790 1.08442 1.21677 1.00994 0.90127 0.90639 1.20011 0.91657 0.95826 1.12382 1.17735 0.80241 0.85674 0.81659 1.90750 1.69588 1.43292 1.38455 1.48647 1.33597 1.16928 1.32704 1.22462 0.95395 0.83148 0.99794 1.21686 0.88795 0.94715 0.88387 0.87017 1.22573 0.99422 0.96006 0.99560 1.22436 0.97207 0.96869 0.99463 1.21945 0.89941 0.92376 0.93273 0.90543 1.23070 0.99542 0.88833 0.91817 1.45118 1.10117 1.10658 1.64529 1.18910 0.84259 1.18807 1.13970 0.90837 1.24923 0.97717 1.00119 0.96878 1.69845 1.34135 1.27039 1.24493 0.86221 0.83563 0.77345 0.78669 1.21592 1.21152 1.21075 0.92344 0.92363 0.88537 0.89996 0.90436 0.90299 0.84082 0.83485 0.91380 0.89827 0.92739 0.92896 0.93217 0.92726 0.91141 0.91509 0.93370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.46 10.38 101.05 1.05 1.51 16 2 O -0.29 -4.75 9.60 -24.43 -0.23 -4.98 16 3 C 0.37 5.91 7.49 -16.61 -0.12 5.79 16 4 N -0.54 -7.51 9.11 -9.20 -0.08 -7.59 16 5 C 0.18 1.99 6.78 -82.52 -0.56 1.43 16 6 C -0.10 -0.75 10.16 36.01 0.37 -0.38 16 7 C -0.22 -2.30 9.71 -39.50 -0.38 -2.68 16 8 C -0.01 -0.12 7.56 -38.89 -0.29 -0.41 16 9 C -0.19 -3.20 4.98 -104.69 -0.52 -3.72 16 10 C 0.56 11.22 6.96 -12.48 -0.09 11.13 16 11 O -0.54 -12.64 16.13 -1.17 -0.02 -12.66 16 12 N -0.59 -11.68 2.28 -171.04 -0.39 -12.07 16 13 C 0.11 2.59 5.75 -3.22 -0.02 2.57 16 14 C 0.17 3.94 3.07 -65.89 -0.20 3.73 16 15 H 0.11 2.89 6.62 -51.93 -0.34 2.54 16 16 C -0.14 -2.73 6.16 -25.47 -0.16 -2.89 16 17 C -0.12 -2.20 6.19 -25.25 -0.16 -2.36 16 18 C 0.13 2.58 4.27 -65.66 -0.28 2.30 16 19 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 20 C 0.09 1.63 4.85 -2.05 -0.01 1.62 16 21 N -0.58 -13.75 2.79 -152.85 -0.43 -14.18 16 22 C -0.23 -5.98 10.36 -15.06 -0.16 -6.13 16 23 H 0.07 1.85 7.84 -52.49 -0.41 1.43 16 24 C 0.00 0.04 5.43 -17.43 -0.09 -0.05 16 25 N -0.91 -24.85 10.27 55.49 0.57 -24.28 16 26 Si 0.91 21.00 29.56 -169.99 -5.02 15.98 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.06 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.06 0.63 8.11 -51.93 -0.42 0.20 16 32 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.08 0.41 8.07 -51.93 -0.42 -0.01 16 36 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.15 1.75 7.16 -52.49 -0.38 1.38 16 38 H 0.07 1.57 7.15 -51.93 -0.37 1.20 16 39 H 0.08 2.12 7.53 -51.93 -0.39 1.73 16 40 H 0.05 1.10 7.83 -51.93 -0.41 0.69 16 41 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 43 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 45 H 0.07 1.01 5.03 -51.93 -0.26 0.75 16 46 H 0.26 6.90 8.31 -40.82 -0.34 6.57 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -31.56 365.82 -8.47 -40.03 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -6.75 Total: 2.79 kcal Atomic # 6 Polarization: 13.08 SS G_CDS: -1.63 Total: 11.45 kcal Atomic # 7 Polarization: -57.79 SS G_CDS: -0.33 Total: -58.12 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: -0.25 Total: -17.64 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.56 -8.47 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029506010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.752 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds