Wall clock time and date at job start Tue Mar 31 2020 16:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35427 * 117.00087 * 2 1 4 4 N 1.32240 * 119.79968 * 0.24900 * 3 2 1 5 5 C 1.31873 * 121.80074 * 180.29125 * 4 3 2 6 6 C 1.50708 * 119.40883 * 179.72124 * 5 4 3 7 7 C 1.38361 * 121.19126 * 359.74277 * 5 4 3 8 8 C 1.38344 * 119.45288 * 359.97438 * 7 5 4 9 9 C 1.39992 * 118.34885 * 0.02562 * 8 7 5 10 10 C 1.47515 * 120.59732 * 180.02562 * 9 8 7 11 11 O 1.21586 * 120.00309 * 129.17773 * 10 9 8 12 12 N 1.34777 * 120.00095 * 309.18014 * 10 9 8 13 13 C 1.47163 * 120.71598 * 184.19643 * 12 10 9 14 14 C 1.53882 * 108.02897 * 132.74899 * 13 12 10 15 15 H 1.08999 * 112.57484 * 182.22556 * 14 13 12 16 16 C 1.54127 * 107.71337 * 306.33093 * 14 13 12 17 17 C 1.54280 * 104.89168 * 89.41205 * 16 14 13 18 18 C 1.54537 * 104.84580 * 359.80704 * 17 16 14 19 19 H 1.09002 * 112.18042 * 146.41267 * 18 17 16 20 20 C 1.49250 * 120.76652 * 4.28077 * 12 10 9 21 21 N 1.48304 * 107.20805 * 58.36990 * 14 13 12 22 22 C 1.36941 * 128.08050 * 106.70170 * 21 14 13 23 23 H 1.08000 * 120.00027 * 160.13072 * 22 21 14 24 24 C 1.38808 * 119.99713 * 340.12276 * 22 21 14 25 25 N 1.31625 * 119.99881 * 353.30569 * 24 22 21 26 26 Si 1.86797 * 119.99856 * 173.30314 * 24 22 21 27 27 H 1.48506 * 109.46901 * 180.02562 * 26 24 22 28 28 H 1.48498 * 109.47139 * 299.99686 * 26 24 22 29 29 H 1.48497 * 109.47416 * 60.00239 * 26 24 22 30 30 H 1.09001 * 109.47249 * 300.00205 * 1 2 3 31 31 H 1.08999 * 109.47188 * 60.00279 * 1 2 3 32 32 H 1.09000 * 109.47079 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47088 * 270.02460 * 6 5 4 34 34 H 1.09005 * 109.46561 * 30.02366 * 6 5 4 35 35 H 1.08998 * 109.47174 * 150.01940 * 6 5 4 36 36 H 1.07994 * 120.27675 * 179.97438 * 7 5 4 37 37 H 1.07998 * 120.82530 * 179.97438 * 8 7 5 38 38 H 1.09004 * 109.74251 * 13.12142 * 13 12 10 39 39 H 1.08994 * 109.75099 * 252.38903 * 13 12 10 40 40 H 1.09006 * 110.50433 * 330.47132 * 16 14 13 41 41 H 1.09004 * 110.27806 * 208.23513 * 16 14 13 42 42 H 1.08998 * 110.36287 * 240.96322 * 17 16 14 43 43 H 1.09002 * 110.36286 * 118.65186 * 17 16 14 44 44 H 1.09000 * 110.51834 * 107.81871 * 20 12 10 45 45 H 1.09005 * 109.74793 * 346.59728 * 20 12 10 46 46 H 0.97005 * 119.99786 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0438 1.2067 0.0000 4 7 1.3197 2.3132 0.0050 5 6 1.8770 3.5084 -0.0005 6 6 0.9998 4.7339 -0.0008 7 6 3.2525 3.6576 -0.0065 8 6 4.0587 2.5334 -0.0062 9 6 3.4449 1.2752 -0.0003 10 6 4.2569 0.0436 0.0009 11 8 4.0389 -0.8276 0.8205 12 7 5.2405 -0.1159 -0.9066 13 6 5.9993 -1.3747 -0.9792 14 6 6.0712 -1.8030 -2.4555 15 1 6.5877 -2.7533 -2.5908 16 6 4.6311 -1.8422 -3.0031 17 6 4.3718 -0.4190 -3.5391 18 6 5.6810 0.3535 -3.2611 19 1 5.8909 1.0976 -4.0294 20 6 5.5859 0.9802 -1.8589 21 7 6.7237 -0.6995 -3.2012 22 6 7.9910 -0.6636 -3.7188 23 1 8.2364 0.0432 -4.4977 24 6 8.9603 -1.5354 -3.2422 25 7 8.7015 -2.3044 -2.2058 26 14 10.6319 -1.6174 -4.0719 27 1 11.4802 -2.6196 -3.3781 28 1 10.4605 -2.0136 -5.4927 29 1 11.2839 -0.2849 -4.0047 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7842 5.0261 -1.0284 34 1 0.0667 4.5129 0.5176 35 1 1.5141 5.5489 0.5085 36 1 3.6932 4.6435 -0.0114 37 1 5.1349 2.6241 -0.0112 38 1 5.4926 -2.1442 -0.3967 39 1 7.0060 -1.2209 -0.5908 40 1 3.9262 -2.0820 -2.2068 41 1 4.5533 -2.5714 -3.8096 42 1 3.5395 0.0411 -3.0066 43 1 4.1685 -0.4481 -4.6097 44 1 6.5414 1.4316 -1.5915 45 1 4.8032 1.7388 -1.8468 46 1 9.3788 -2.9140 -1.8730 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029506010.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:39 Heat of formation + Delta-G solvation = -9.491305 kcal Electronic energy + Delta-G solvation = -30079.430721 eV Core-core repulsion = 26163.021465 eV Total energy + Delta-G solvation = -3916.409256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.17232 -41.06220 -39.20536 -39.09343 -35.48340 -34.40885 -33.87142 -32.75935 -32.15612 -31.07153 -29.50096 -28.33131 -27.37850 -25.58887 -25.50156 -24.03503 -23.68110 -21.64945 -21.26512 -20.48162 -19.24313 -18.83140 -17.94564 -17.87057 -17.23580 -16.77801 -16.69866 -16.54051 -15.69227 -15.57387 -15.32875 -15.06505 -14.89759 -14.76060 -14.61731 -14.43551 -14.16113 -13.57053 -13.46320 -13.41864 -13.28282 -13.18055 -12.96356 -12.85343 -12.69867 -12.67765 -12.61770 -12.03816 -12.01845 -11.83892 -11.58991 -11.51971 -11.22172 -11.16996 -10.83869 -10.72154 -10.50570 -9.78624 -9.43936 -8.66926 -7.84728 -5.23400 -0.23332 0.21278 1.51048 1.52586 1.58774 1.66767 2.02432 2.07186 2.52010 2.65462 3.10518 3.35900 3.44890 3.56614 3.74488 3.94247 4.04085 4.09915 4.20059 4.22871 4.30704 4.34294 4.37072 4.38839 4.39317 4.59348 4.68215 4.69673 4.73808 4.81440 4.86833 4.95713 4.97563 5.01016 5.03043 5.08604 5.10435 5.18735 5.23450 5.35899 5.50346 5.51370 5.58616 5.80675 6.18680 6.22770 6.51175 6.75603 7.05586 7.17710 7.72580 8.53616 9.27566 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019627 B = 0.003722 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1426.266457 B = 7520.370172 C = 8016.060483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.319 6.319 3 C 0.351 3.649 4 N -0.550 5.550 5 C 0.179 3.821 6 C -0.102 4.102 7 C -0.200 4.200 8 C -0.010 4.010 9 C -0.225 4.225 10 C 0.562 3.438 11 O -0.587 6.587 12 N -0.588 5.588 13 C 0.131 3.869 14 C 0.172 3.828 15 H 0.075 0.925 16 C -0.128 4.128 17 C -0.109 4.109 18 C 0.128 3.872 19 H 0.098 0.902 20 C 0.100 3.900 21 N -0.601 5.601 22 C -0.236 4.236 23 H 0.083 0.917 24 C -0.052 4.052 25 N -0.937 5.937 26 Si 0.973 3.027 27 H -0.301 1.301 28 H -0.281 1.281 29 H -0.276 1.276 30 H 0.063 0.937 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.107 0.893 36 H 0.185 0.815 37 H 0.157 0.843 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.047 0.953 41 H 0.057 0.943 42 H 0.060 0.940 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.102 0.898 46 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.711 15.896 1.394 22.393 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.225 6.225 3 C 0.172 3.828 4 N -0.275 5.275 5 C 0.041 3.959 6 C -0.159 4.159 7 C -0.219 4.219 8 C -0.035 4.035 9 C -0.232 4.232 10 C 0.351 3.649 11 O -0.469 6.469 12 N -0.319 5.319 13 C 0.007 3.993 14 C 0.064 3.936 15 H 0.093 0.907 16 C -0.167 4.167 17 C -0.148 4.148 18 C 0.021 3.979 19 H 0.116 0.884 20 C -0.023 4.023 21 N -0.323 5.323 22 C -0.365 4.365 23 H 0.100 0.900 24 C -0.246 4.246 25 N -0.584 5.584 26 Si 0.802 3.198 27 H -0.228 1.228 28 H -0.207 1.207 29 H -0.202 1.202 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.130 0.870 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.202 0.798 37 H 0.175 0.825 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.360 14.960 1.806 22.242 hybrid contribution 1.909 -0.918 0.024 2.118 sum -14.451 14.042 1.829 20.232 Atomic orbital electron populations 1.23091 0.75470 1.04424 1.02743 1.86343 1.24781 1.24749 1.86648 1.19764 0.87883 0.85294 0.89857 1.67303 1.40142 0.98463 1.21617 1.21931 0.93341 0.92169 0.88428 1.20931 0.98746 0.91471 1.04780 1.22140 0.93274 1.00673 1.05852 1.21877 1.01813 0.89549 0.90268 1.19798 0.91647 0.95199 1.16510 1.18298 0.79754 0.86462 0.80402 1.90707 1.70681 1.45405 1.40112 1.48632 1.33512 1.16394 1.33403 1.21970 0.93654 0.84395 0.99294 1.21478 0.90111 0.93323 0.88659 0.90746 1.22442 0.97064 0.97848 0.99379 1.22353 0.96897 0.94976 1.00525 1.22214 0.88942 0.92041 0.94688 0.88430 1.23093 1.00564 0.88582 0.90089 1.45280 1.10342 1.12225 1.64418 1.19262 0.85142 1.18265 1.13784 0.89977 1.25637 1.00848 1.00453 0.97689 1.70048 1.34526 1.27818 1.25963 0.85254 0.79872 0.77110 0.77578 1.22783 1.20725 1.20195 0.91877 0.91481 0.86990 0.88291 0.90486 0.87463 0.79797 0.82527 0.93101 0.93362 0.93404 0.92434 0.92108 0.90999 0.91625 0.87987 0.94387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.84 10.38 113.37 1.18 2.02 16 2 O -0.32 -10.67 9.60 -81.05 -0.78 -11.45 16 3 C 0.35 11.03 7.49 85.13 0.64 11.67 16 4 N -0.55 -13.86 9.11 -296.04 -2.70 -16.55 16 5 C 0.18 3.27 6.78 42.58 0.29 3.56 16 6 C -0.10 -0.95 10.16 71.24 0.72 -0.22 16 7 C -0.20 -3.30 9.71 22.32 0.22 -3.09 16 8 C -0.01 -0.23 7.56 22.72 0.17 -0.05 16 9 C -0.23 -7.29 4.98 -19.91 -0.10 -7.39 16 10 C 0.56 23.00 6.96 86.69 0.60 23.60 16 11 O -0.59 -28.79 16.13 2.19 0.04 -28.76 16 12 N -0.59 -23.85 2.28 -813.31 -1.86 -25.71 16 13 C 0.13 6.27 5.75 86.55 0.50 6.77 16 14 C 0.17 8.21 3.07 45.32 0.14 8.35 16 15 H 0.07 4.10 6.62 -2.39 -0.02 4.08 16 16 C -0.13 -5.18 6.16 31.41 0.19 -4.99 16 17 C -0.11 -3.76 6.19 31.55 0.20 -3.57 16 18 C 0.13 4.75 4.27 45.47 0.19 4.94 16 19 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 20 C 0.10 3.40 4.85 86.15 0.42 3.82 16 21 N -0.60 -28.46 2.79 -637.50 -1.78 -30.24 16 22 C -0.24 -12.20 10.36 84.03 0.87 -11.32 16 23 H 0.08 4.03 7.84 -2.91 -0.02 4.00 16 24 C -0.05 -2.76 5.43 84.86 0.46 -2.30 16 25 N -0.94 -53.54 10.27 21.65 0.22 -53.32 16 26 Si 0.97 43.81 29.56 68.60 2.03 45.84 16 27 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 28 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 29 H -0.28 -11.94 7.11 99.48 0.71 -11.24 16 30 H 0.06 1.33 8.10 -2.39 -0.02 1.31 16 31 H 0.07 1.36 8.11 -2.39 -0.02 1.34 16 32 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 35 H 0.11 0.44 8.07 -2.39 -0.02 0.43 16 36 H 0.18 1.47 8.06 -2.91 -0.02 1.45 16 37 H 0.16 3.30 7.16 -2.91 -0.02 3.28 16 38 H 0.05 2.55 7.15 -2.38 -0.02 2.53 16 39 H 0.05 2.62 7.53 -2.39 -0.02 2.61 16 40 H 0.05 1.98 7.83 -2.38 -0.02 1.96 16 41 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 42 H 0.06 2.00 7.86 -2.39 -0.02 1.98 16 43 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.10 2.78 5.03 -2.38 -0.01 2.77 16 46 H 0.25 14.02 8.31 -92.70 -0.77 13.24 16 Total: -1.00 -72.97 365.82 2.85 -70.12 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.99 Total: 18.27 kcal Atomic # 6 Polarization: 25.11 SS G_CDS: 6.69 Total: 31.80 kcal Atomic # 7 Polarization: -119.71 SS G_CDS: -6.11 Total: -125.82 kcal Atomic # 8 Polarization: -39.47 SS G_CDS: -0.74 Total: -40.21 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 2.03 Total: 45.84 kcal Total: -72.97 2.85 -70.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029506010.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.633 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds