Wall clock time and date at job start Tue Mar 31 2020 17:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37994 * 120.82020 * 2 1 4 4 C 1.39127 * 119.26385 * 179.97438 * 3 2 1 5 5 O 1.35507 * 119.52389 * 179.97438 * 4 3 2 6 6 N 1.32433 * 120.95094 * 0.02562 * 4 3 2 7 7 C 1.31642 * 121.79881 * 359.71647 * 6 4 3 8 8 C 1.50698 * 119.68735 * 180.27009 * 7 6 4 9 9 C 1.39568 * 120.62364 * 0.55158 * 7 6 4 10 10 C 1.47612 * 120.49598 * 179.74622 * 9 7 6 11 11 O 1.21582 * 120.00006 * 262.55528 * 10 9 7 12 12 N 1.34783 * 119.99991 * 82.55533 * 10 9 7 13 13 C 1.47157 * 120.70900 * 5.19590 * 12 10 9 14 14 C 1.53882 * 108.03310 * 132.73290 * 13 12 10 15 15 H 1.09007 * 112.10145 * 181.90419 * 14 13 12 16 16 C 1.54547 * 108.37096 * 306.25316 * 14 13 12 17 17 C 1.54824 * 104.74232 * 89.16824 * 16 14 13 18 18 C 1.54542 * 104.74844 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.68110 * 146.80438 * 18 17 16 20 20 C 1.47158 * 120.70711 * 185.16980 * 12 10 9 21 21 N 1.48313 * 104.35421 * 24.82767 * 18 17 16 22 22 C 1.36933 * 128.07809 * 139.08565 * 21 18 17 23 23 H 1.08001 * 119.99654 * 344.99477 * 22 21 18 24 24 C 1.38806 * 119.99959 * 165.00095 * 22 21 18 25 25 N 1.31614 * 120.00149 * 350.71131 * 24 22 21 26 26 Si 1.86802 * 119.99925 * 170.71602 * 24 22 21 27 27 H 1.48498 * 109.47434 * 179.97438 * 26 24 22 28 28 H 1.48495 * 109.47264 * 300.00153 * 26 24 22 29 29 H 1.48502 * 109.47134 * 60.00002 * 26 24 22 30 30 H 1.09004 * 109.46740 * 275.44563 * 1 2 3 31 31 H 1.08994 * 109.47621 * 35.44039 * 1 2 3 32 32 H 1.08999 * 109.47392 * 155.44768 * 1 2 3 33 33 H 1.08002 * 120.37200 * 359.97438 * 3 2 1 34 34 H 0.96699 * 113.99687 * 90.00060 * 5 4 3 35 35 H 1.09003 * 109.47313 * 273.45087 * 8 7 6 36 36 H 1.09002 * 109.47052 * 33.44451 * 8 7 6 37 37 H 1.08994 * 109.47296 * 153.44684 * 8 7 6 38 38 H 1.09005 * 109.75125 * 13.10399 * 13 12 10 39 39 H 1.08999 * 109.79308 * 252.39326 * 13 12 10 40 40 H 1.09002 * 110.36597 * 208.13749 * 16 14 13 41 41 H 1.09003 * 110.35955 * 330.44855 * 16 14 13 42 42 H 1.09003 * 110.30648 * 241.24779 * 17 16 14 43 43 H 1.09005 * 110.61155 * 118.92055 * 17 16 14 44 44 H 1.08994 * 109.75236 * 346.90677 * 20 12 10 45 45 H 1.09006 * 109.74667 * 107.63042 * 20 12 10 46 46 H 0.97005 * 119.99911 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2547 -0.0066 0.0005 7 6 3.6204 -1.1601 0.0056 8 6 4.4080 -2.4449 0.0115 9 6 2.2255 -1.2044 -0.0004 10 6 1.5171 -2.4994 -0.0004 11 8 1.1103 -2.9698 -1.0451 12 7 1.3213 -3.1604 1.1578 13 6 1.7050 -2.5547 2.4429 14 6 0.5301 -2.7292 3.4213 15 1 0.7319 -2.2721 4.3901 16 6 -0.7438 -2.1564 2.7599 17 6 -1.3522 -3.3473 1.9798 18 6 -0.3879 -4.5254 2.2454 19 1 -0.8998 -5.4869 2.2849 20 6 0.7189 -4.5030 1.1642 21 7 0.2636 -4.1841 3.5333 22 6 0.5564 -5.0186 4.5788 23 1 0.1023 -5.9970 4.6323 24 6 1.4368 -4.6069 5.5698 25 7 2.1289 -3.4980 5.4160 26 14 1.6395 -5.6267 7.1216 27 1 2.6313 -4.9765 8.0153 28 1 0.3337 -5.7282 7.8214 29 1 2.1151 -6.9867 6.7616 30 1 -0.3633 0.0975 1.0231 31 1 -0.3634 0.8372 -0.5958 32 1 -0.3634 -0.9347 -0.4270 33 1 1.6936 2.1314 -0.0004 34 1 4.5070 2.6452 0.8833 35 1 4.6508 -2.7269 -1.0130 36 1 5.3288 -2.3040 0.5775 37 1 3.8141 -3.2330 0.4743 38 1 1.9130 -1.4940 2.3026 39 1 2.5898 -3.0545 2.8370 40 1 -1.4397 -1.8023 3.5205 41 1 -0.4852 -1.3483 2.0755 42 1 -1.3910 -3.1213 0.9142 43 1 -2.3490 -3.5817 2.3535 44 1 0.2826 -4.7156 0.1883 45 1 1.4803 -5.2472 1.3979 46 1 2.7444 -3.2105 6.1085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029592466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:37 Heat of formation + Delta-G solvation = -2.001115 kcal Electronic energy + Delta-G solvation = -30542.571414 eV Core-core repulsion = 26626.486957 eV Total energy + Delta-G solvation = -3916.084457 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.03703 -39.69675 -37.97603 -37.01335 -34.31852 -33.79782 -32.57229 -31.70908 -30.53395 -29.32768 -28.09024 -27.86266 -26.18424 -24.20589 -23.79273 -23.10054 -21.33318 -20.25012 -19.74438 -18.79361 -18.38425 -17.55567 -17.22947 -16.05903 -15.95042 -15.55264 -15.29872 -14.70177 -14.14934 -14.04017 -13.84703 -13.63190 -13.52888 -13.24038 -13.05463 -12.96425 -12.90458 -12.64376 -12.28305 -12.12489 -11.93602 -11.82601 -11.68228 -11.66421 -11.62267 -11.13055 -10.93032 -10.83482 -10.43771 -10.14683 -9.95717 -9.82732 -9.67558 -9.66189 -9.50885 -9.30524 -8.86964 -8.72273 -8.16455 -6.92551 -5.91950 -3.26546 0.79752 1.12475 2.86058 3.21648 3.31762 3.37520 3.37874 3.56427 3.66438 4.35974 4.43775 4.51442 4.74381 4.99791 5.10873 5.14785 5.26057 5.31240 5.45797 5.49122 5.53198 5.59650 5.65069 5.66719 5.72050 5.79652 5.88134 5.94566 5.95324 6.04534 6.11088 6.15919 6.24933 6.32425 6.41321 6.46243 6.54243 6.56869 6.66873 6.81567 6.87754 7.17308 7.35835 7.38186 7.58216 7.84224 7.93824 8.05805 8.50894 8.98280 9.60587 10.36547 11.21150 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.004479 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.316305 B = 6250.436533 C = 6918.936280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.010 3.990 3 C -0.196 4.196 4 C 0.324 3.676 5 O -0.483 6.483 6 N -0.506 5.506 7 C 0.193 3.807 8 C -0.111 4.111 9 C -0.172 4.172 10 C 0.563 3.437 11 O -0.553 6.553 12 N -0.581 5.581 13 C 0.108 3.892 14 C 0.168 3.832 15 H 0.119 0.881 16 C -0.141 4.141 17 C -0.123 4.123 18 C 0.134 3.866 19 H 0.079 0.921 20 C 0.099 3.901 21 N -0.584 5.584 22 C -0.225 4.225 23 H 0.077 0.923 24 C -0.002 4.002 25 N -0.916 5.916 26 Si 0.912 3.088 27 H -0.290 1.290 28 H -0.285 1.285 29 H -0.284 1.284 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.401 0.599 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.084 0.916 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.055 0.945 44 H 0.076 0.924 45 H 0.066 0.934 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.208 8.208 -7.451 11.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.002 3.998 3 C -0.218 4.218 4 C 0.146 3.854 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.054 3.946 8 C -0.168 4.168 9 C -0.178 4.178 10 C 0.350 3.650 11 O -0.433 6.433 12 N -0.311 5.311 13 C -0.016 4.016 14 C 0.060 3.940 15 H 0.137 0.863 16 C -0.180 4.180 17 C -0.162 4.162 18 C 0.026 3.974 19 H 0.097 0.903 20 C -0.025 4.025 21 N -0.304 5.304 22 C -0.353 4.353 23 H 0.094 0.906 24 C -0.199 4.199 25 N -0.562 5.562 26 Si 0.742 3.258 27 H -0.216 1.216 28 H -0.212 1.212 29 H -0.211 1.211 30 H 0.107 0.893 31 H 0.096 0.904 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.259 0.741 35 H 0.101 0.899 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.103 0.897 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.084 0.916 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.403 7.919 -8.308 11.485 hybrid contribution -0.421 -0.196 1.330 1.409 sum -0.824 7.724 -6.978 10.441 Atomic orbital electron populations 1.21040 0.89490 1.04156 1.03600 1.20165 0.96947 0.90847 0.91854 1.21809 0.93698 0.99228 1.07027 1.19184 0.87003 0.84988 0.94249 1.84710 1.76080 1.34176 1.34060 1.66945 1.41908 0.97816 1.15939 1.21008 0.89267 0.93034 0.91256 1.20855 1.00561 0.91848 1.03562 1.20726 0.94793 0.94756 1.07480 1.17886 0.79378 0.83770 0.84008 1.90752 1.52157 1.68725 1.31634 1.48246 1.58890 1.17655 1.06332 1.22591 1.01236 0.95757 0.81969 1.21855 0.89026 0.85720 0.97356 0.86308 1.22845 0.99484 0.96992 0.98650 1.22538 0.98443 0.96429 0.98757 1.22143 0.91871 0.96695 0.86713 0.90284 1.22606 0.97208 0.82520 1.00188 1.45184 1.68748 1.03894 1.12619 1.18969 1.20402 0.97611 0.98350 0.90558 1.24795 0.97216 0.98214 0.99656 1.69796 1.28355 1.23949 1.34131 0.86205 0.77395 0.79312 0.82854 1.21609 1.21185 1.21092 0.89326 0.90419 0.90252 0.83842 0.74069 0.89860 0.89649 0.89994 0.92755 0.89731 0.92658 0.92812 0.92661 0.92593 0.90552 0.91594 0.93451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.52 9.16 36.00 0.33 -1.19 16 2 C 0.01 0.14 5.86 -103.96 -0.61 -0.47 16 3 C -0.20 -2.45 9.74 -39.34 -0.38 -2.83 16 4 C 0.32 4.47 7.74 -16.96 -0.13 4.33 16 5 O -0.48 -5.48 13.55 -18.21 -0.25 -5.73 16 6 N -0.51 -7.99 10.28 -9.20 -0.09 -8.08 16 7 C 0.19 3.09 6.82 -82.18 -0.56 2.53 16 8 C -0.11 -1.62 9.85 36.00 0.35 -1.26 16 9 C -0.17 -2.80 3.71 -104.82 -0.39 -3.19 16 10 C 0.56 10.06 4.26 -12.43 -0.05 10.00 16 11 O -0.55 -11.18 16.38 5.29 0.09 -11.09 16 12 N -0.58 -10.48 1.98 -172.20 -0.34 -10.82 16 13 C 0.11 2.08 5.69 -3.22 -0.02 2.06 16 14 C 0.17 3.48 3.09 -65.65 -0.20 3.28 16 15 H 0.12 2.83 6.34 -51.93 -0.33 2.50 16 16 C -0.14 -2.45 6.23 -24.96 -0.16 -2.60 16 17 C -0.12 -2.07 6.24 -24.96 -0.16 -2.23 16 18 C 0.13 2.53 4.32 -65.21 -0.28 2.25 16 19 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 20 C 0.10 1.81 5.99 -2.77 -0.02 1.80 16 21 N -0.58 -13.06 2.80 -152.08 -0.43 -13.49 16 22 C -0.23 -5.63 10.37 -15.06 -0.16 -5.79 16 23 H 0.08 1.87 7.85 -52.49 -0.41 1.46 16 24 C 0.00 -0.05 5.42 -17.43 -0.09 -0.14 16 25 N -0.92 -23.75 10.36 55.49 0.57 -23.17 16 26 Si 0.91 20.51 29.56 -169.99 -5.03 15.48 16 27 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 28 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 29 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 30 H 0.09 1.00 6.23 -51.93 -0.32 0.68 16 31 H 0.08 0.74 8.13 -51.93 -0.42 0.32 16 32 H 0.08 1.11 6.86 -51.93 -0.36 0.75 16 33 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 34 H 0.40 2.54 9.06 45.56 0.41 2.95 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.08 1.29 6.72 -51.93 -0.35 0.94 16 38 H 0.05 0.99 6.47 -51.93 -0.34 0.65 16 39 H 0.08 1.89 7.80 -51.93 -0.40 1.49 16 40 H 0.05 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 0.84 5.15 -51.93 -0.27 0.57 16 42 H 0.05 0.90 7.87 -51.93 -0.41 0.49 16 43 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.08 1.35 7.08 -51.93 -0.37 0.98 16 45 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -29.75 361.48 -8.20 -37.95 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: -5.66 Total: 6.96 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.52 Total: 6.55 kcal Atomic # 7 Polarization: -55.28 SS G_CDS: -0.29 Total: -55.57 kcal Atomic # 8 Polarization: -16.66 SS G_CDS: -0.16 Total: -16.82 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.03 Total: 15.48 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -29.75 -8.20 -37.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029592466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.949 kcal (2) G-P(sol) polarization free energy of solvation -29.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.205 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds