Wall clock time and date at job start Tue Mar 31 2020 17:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37994 * 120.82020 * 2 1 4 4 C 1.39127 * 119.26385 * 179.97438 * 3 2 1 5 5 O 1.35507 * 119.52389 * 179.97438 * 4 3 2 6 6 N 1.32433 * 120.95094 * 0.02562 * 4 3 2 7 7 C 1.31642 * 121.79881 * 359.71647 * 6 4 3 8 8 C 1.50698 * 119.68735 * 180.27009 * 7 6 4 9 9 C 1.39568 * 120.62364 * 0.55158 * 7 6 4 10 10 C 1.47612 * 120.49598 * 179.74622 * 9 7 6 11 11 O 1.21582 * 120.00006 * 262.55528 * 10 9 7 12 12 N 1.34783 * 119.99991 * 82.55533 * 10 9 7 13 13 C 1.47157 * 120.70900 * 5.19590 * 12 10 9 14 14 C 1.53882 * 108.03310 * 132.73290 * 13 12 10 15 15 H 1.09007 * 112.10145 * 181.90419 * 14 13 12 16 16 C 1.54547 * 108.37096 * 306.25316 * 14 13 12 17 17 C 1.54824 * 104.74232 * 89.16824 * 16 14 13 18 18 C 1.54542 * 104.74844 * 0.02562 * 17 16 14 19 19 H 1.09000 * 112.68110 * 146.80438 * 18 17 16 20 20 C 1.47158 * 120.70711 * 185.16980 * 12 10 9 21 21 N 1.48313 * 104.35421 * 24.82767 * 18 17 16 22 22 C 1.36933 * 128.07809 * 139.08565 * 21 18 17 23 23 H 1.08001 * 119.99654 * 344.99477 * 22 21 18 24 24 C 1.38806 * 119.99959 * 165.00095 * 22 21 18 25 25 N 1.31614 * 120.00149 * 350.71131 * 24 22 21 26 26 Si 1.86802 * 119.99925 * 170.71602 * 24 22 21 27 27 H 1.48498 * 109.47434 * 179.97438 * 26 24 22 28 28 H 1.48495 * 109.47264 * 300.00153 * 26 24 22 29 29 H 1.48502 * 109.47134 * 60.00002 * 26 24 22 30 30 H 1.09004 * 109.46740 * 275.44563 * 1 2 3 31 31 H 1.08994 * 109.47621 * 35.44039 * 1 2 3 32 32 H 1.08999 * 109.47392 * 155.44768 * 1 2 3 33 33 H 1.08002 * 120.37200 * 359.97438 * 3 2 1 34 34 H 0.96699 * 113.99687 * 90.00060 * 5 4 3 35 35 H 1.09003 * 109.47313 * 273.45087 * 8 7 6 36 36 H 1.09002 * 109.47052 * 33.44451 * 8 7 6 37 37 H 1.08994 * 109.47296 * 153.44684 * 8 7 6 38 38 H 1.09005 * 109.75125 * 13.10399 * 13 12 10 39 39 H 1.08999 * 109.79308 * 252.39326 * 13 12 10 40 40 H 1.09002 * 110.36597 * 208.13749 * 16 14 13 41 41 H 1.09003 * 110.35955 * 330.44855 * 16 14 13 42 42 H 1.09003 * 110.30648 * 241.24779 * 17 16 14 43 43 H 1.09005 * 110.61155 * 118.92055 * 17 16 14 44 44 H 1.08994 * 109.75236 * 346.90677 * 20 12 10 45 45 H 1.09006 * 109.74667 * 107.63042 * 20 12 10 46 46 H 0.97005 * 119.99911 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6047 1.1473 0.0005 5 8 4.3043 2.3078 0.0000 6 7 4.2547 -0.0066 0.0005 7 6 3.6204 -1.1601 0.0056 8 6 4.4080 -2.4449 0.0115 9 6 2.2255 -1.2044 -0.0004 10 6 1.5171 -2.4994 -0.0004 11 8 1.1103 -2.9698 -1.0451 12 7 1.3213 -3.1604 1.1578 13 6 1.7050 -2.5547 2.4429 14 6 0.5301 -2.7292 3.4213 15 1 0.7319 -2.2721 4.3901 16 6 -0.7438 -2.1564 2.7599 17 6 -1.3522 -3.3473 1.9798 18 6 -0.3879 -4.5254 2.2454 19 1 -0.8998 -5.4869 2.2849 20 6 0.7189 -4.5030 1.1642 21 7 0.2636 -4.1841 3.5333 22 6 0.5564 -5.0186 4.5788 23 1 0.1023 -5.9970 4.6323 24 6 1.4368 -4.6069 5.5698 25 7 2.1289 -3.4980 5.4160 26 14 1.6395 -5.6267 7.1216 27 1 2.6313 -4.9765 8.0153 28 1 0.3337 -5.7282 7.8214 29 1 2.1151 -6.9867 6.7616 30 1 -0.3633 0.0975 1.0231 31 1 -0.3634 0.8372 -0.5958 32 1 -0.3634 -0.9347 -0.4270 33 1 1.6936 2.1314 -0.0004 34 1 4.5070 2.6452 0.8833 35 1 4.6508 -2.7269 -1.0130 36 1 5.3288 -2.3040 0.5775 37 1 3.8141 -3.2330 0.4743 38 1 1.9130 -1.4940 2.3026 39 1 2.5898 -3.0545 2.8370 40 1 -1.4397 -1.8023 3.5205 41 1 -0.4852 -1.3483 2.0755 42 1 -1.3910 -3.1213 0.9142 43 1 -2.3490 -3.5817 2.3535 44 1 0.2826 -4.7156 0.1883 45 1 1.4803 -5.2472 1.3979 46 1 2.7444 -3.2105 6.1085 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029592466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:36 Heat of formation + Delta-G solvation = -22.058122 kcal Electronic energy + Delta-G solvation = -30543.441151 eV Core-core repulsion = 26626.486957 eV Total energy + Delta-G solvation = -3916.954194 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.27334 -41.03582 -39.37688 -38.09451 -35.41415 -35.37222 -34.27604 -32.92252 -32.03779 -31.02877 -29.09472 -29.05513 -27.71088 -25.71965 -25.41617 -24.36797 -22.40692 -21.68194 -21.24360 -20.36036 -19.43385 -19.00846 -18.35400 -17.70736 -17.28508 -16.76856 -16.69615 -16.44120 -15.59993 -15.24821 -15.18694 -14.92675 -14.71005 -14.64532 -14.48402 -14.30593 -14.10311 -13.87543 -13.52045 -13.45648 -13.29197 -13.23829 -13.07162 -12.91538 -12.84552 -12.69288 -12.62968 -12.53430 -11.97315 -11.84244 -11.49001 -11.40642 -11.22755 -11.12734 -10.69485 -10.58461 -10.46673 -9.85411 -9.76975 -8.69948 -7.83570 -5.17758 -0.29863 0.05592 1.45277 1.51741 1.52695 1.57924 1.97110 2.36621 2.52874 2.60614 3.35150 3.37205 3.38392 3.49323 3.54712 3.98184 4.09238 4.10944 4.18853 4.23900 4.28444 4.32199 4.36746 4.40912 4.49944 4.52051 4.55514 4.61467 4.74693 4.78871 4.85087 4.90943 4.98967 5.02702 5.07386 5.09963 5.14058 5.17908 5.32808 5.38246 5.44494 5.56077 5.61941 5.81848 6.24391 6.45379 6.55724 6.79996 7.06727 7.09683 7.74549 8.53201 9.27499 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014222 B = 0.004479 C = 0.004046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.316305 B = 6250.436533 C = 6918.936280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.008 3.992 3 C -0.185 4.185 4 C 0.325 3.675 5 O -0.485 6.485 6 N -0.529 5.529 7 C 0.180 3.820 8 C -0.108 4.108 9 C -0.199 4.199 10 C 0.575 3.425 11 O -0.577 6.577 12 N -0.578 5.578 13 C 0.131 3.869 14 C 0.164 3.836 15 H 0.086 0.914 16 C -0.131 4.131 17 C -0.112 4.112 18 C 0.130 3.870 19 H 0.086 0.914 20 C 0.104 3.896 21 N -0.602 5.602 22 C -0.233 4.233 23 H 0.076 0.924 24 C -0.048 4.048 25 N -0.933 5.933 26 Si 0.967 3.033 27 H -0.297 1.297 28 H -0.283 1.283 29 H -0.284 1.284 30 H 0.098 0.902 31 H 0.108 0.892 32 H 0.059 0.941 33 H 0.181 0.819 34 H 0.424 0.576 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.383 9.986 -8.215 13.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.000 4.000 3 C -0.206 4.206 4 C 0.146 3.854 5 O -0.296 6.296 6 N -0.249 5.249 7 C 0.042 3.958 8 C -0.165 4.165 9 C -0.204 4.204 10 C 0.362 3.638 11 O -0.458 6.458 12 N -0.308 5.308 13 C 0.007 3.993 14 C 0.057 3.943 15 H 0.104 0.896 16 C -0.170 4.170 17 C -0.150 4.150 18 C 0.022 3.978 19 H 0.104 0.896 20 C -0.021 4.021 21 N -0.324 5.324 22 C -0.362 4.362 23 H 0.093 0.907 24 C -0.243 4.243 25 N -0.581 5.581 26 Si 0.796 3.204 27 H -0.224 1.224 28 H -0.209 1.209 29 H -0.210 1.210 30 H 0.116 0.884 31 H 0.127 0.873 32 H 0.078 0.922 33 H 0.198 0.802 34 H 0.286 0.714 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.087 0.913 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.589 9.708 -9.075 13.384 hybrid contribution -0.007 -0.681 1.520 1.666 sum -1.596 9.027 -7.555 11.879 Atomic orbital electron populations 1.21084 0.87932 1.04429 1.04549 1.20482 0.98101 0.90459 0.90985 1.22110 0.93126 1.00095 1.05258 1.19477 0.87845 0.85018 0.93064 1.84666 1.75842 1.32974 1.36072 1.66950 1.42568 0.98367 1.17050 1.21078 0.89425 0.93490 0.91795 1.20818 1.00456 0.91245 1.04026 1.20675 0.94993 0.94644 1.10116 1.18048 0.78488 0.84076 0.83140 1.90729 1.53217 1.69579 1.32266 1.48157 1.59008 1.17526 1.06147 1.22151 0.99207 0.95860 0.82097 1.21786 0.91024 0.85052 0.96460 0.89582 1.22760 0.97687 0.97613 0.98945 1.22449 0.98293 0.94993 0.99312 1.22331 0.92167 0.98056 0.85204 0.89602 1.22491 0.96662 0.82449 1.00456 1.45357 1.69068 1.04545 1.13425 1.19217 1.19895 0.97933 0.99145 0.90650 1.25393 0.97625 0.99341 1.01897 1.69960 1.28831 1.25000 1.34267 0.85346 0.76929 0.77999 0.80094 1.22372 1.20932 1.21001 0.88384 0.87348 0.92216 0.80211 0.71432 0.88977 0.89010 0.91760 0.91570 0.93477 0.92184 0.90825 0.91595 0.91304 0.89564 0.93310 0.94276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.57 9.16 71.24 0.65 -1.92 16 2 C 0.01 0.20 5.86 -19.44 -0.11 0.08 16 3 C -0.19 -3.99 9.74 22.43 0.22 -3.77 16 4 C 0.32 8.15 7.74 84.82 0.66 8.81 16 5 O -0.48 -9.60 13.55 -88.08 -1.19 -10.79 16 6 N -0.53 -16.10 10.28 -295.88 -3.04 -19.14 16 7 C 0.18 5.71 6.82 42.91 0.29 6.01 16 8 C -0.11 -3.22 9.85 71.24 0.70 -2.51 16 9 C -0.20 -6.28 3.71 -20.00 -0.07 -6.35 16 10 C 0.57 20.25 4.26 86.72 0.37 20.62 16 11 O -0.58 -23.01 16.38 -3.98 -0.07 -23.08 16 12 N -0.58 -20.88 1.98 -816.99 -1.62 -22.50 16 13 C 0.13 5.12 5.69 86.55 0.49 5.61 16 14 C 0.16 6.83 3.09 45.46 0.14 6.97 16 15 H 0.09 4.19 6.34 -2.38 -0.02 4.17 16 16 C -0.13 -4.34 6.23 31.74 0.20 -4.14 16 17 C -0.11 -3.54 6.24 31.74 0.20 -3.34 16 18 C 0.13 4.82 4.32 45.76 0.20 5.01 16 19 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 20 C 0.10 3.81 5.99 86.85 0.52 4.33 16 21 N -0.60 -27.17 2.80 -635.05 -1.78 -28.94 16 22 C -0.23 -11.80 10.37 84.03 0.87 -10.92 16 23 H 0.08 3.73 7.85 -2.91 -0.02 3.71 16 24 C -0.05 -2.47 5.42 84.86 0.46 -2.01 16 25 N -0.93 -49.77 10.36 21.65 0.22 -49.54 16 26 Si 0.97 42.80 29.56 68.60 2.03 44.83 16 27 H -0.30 -13.40 7.11 99.48 0.71 -12.69 16 28 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 29 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 30 H 0.10 1.85 6.23 -2.38 -0.01 1.84 16 31 H 0.11 1.58 8.13 -2.39 -0.02 1.56 16 32 H 0.06 1.51 6.86 -2.39 -0.02 1.49 16 33 H 0.18 2.51 8.06 -2.91 -0.02 2.48 16 34 H 0.42 4.08 9.06 -74.06 -0.67 3.40 16 35 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 2.52 8.14 -2.39 -0.02 2.51 16 37 H 0.06 2.10 6.72 -2.39 -0.02 2.09 16 38 H 0.07 2.40 6.47 -2.38 -0.02 2.39 16 39 H 0.05 2.20 7.80 -2.39 -0.02 2.18 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.07 2.13 5.15 -2.39 -0.01 2.11 16 42 H 0.07 1.98 7.87 -2.39 -0.02 1.96 16 43 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 44 H 0.09 3.00 7.08 -2.39 -0.02 2.98 16 45 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 46 H 0.25 13.13 8.31 -92.70 -0.77 12.36 16 Total: -1.00 -64.79 361.48 0.69 -64.10 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: 0.35 Total: 22.60 kcal Atomic # 6 Polarization: 16.68 SS G_CDS: 5.78 Total: 22.47 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -6.22 Total: -120.12 kcal Atomic # 8 Polarization: -32.61 SS G_CDS: -1.26 Total: -33.87 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -64.79 0.69 -64.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029592466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.043 kcal (2) G-P(sol) polarization free energy of solvation -64.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.744 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds