Wall clock time and date at job start Tue Mar 31 2020 17:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38093 * 119.58173 * 2 1 4 4 C 1.38780 * 119.28603 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75936 * 180.02562 * 4 3 2 6 6 C 1.38427 * 118.48566 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.44202 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46564 * 90.00388 * 7 6 4 9 9 O 1.21273 * 120.00282 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99278 * 179.97438 * 8 7 6 11 11 C 1.47866 * 126.94778 * 359.68938 * 10 8 7 12 12 C 1.55999 * 105.11320 * 181.90468 * 11 10 8 13 13 H 1.08998 * 116.81826 * 159.40093 * 12 11 10 14 14 C 1.57088 * 99.48579 * 33.13113 * 12 11 10 15 15 C 1.49292 * 126.93812 * 179.97438 * 10 8 7 16 16 H 1.09001 * 116.15337 * 15.82683 * 15 10 8 17 17 C 1.56012 * 104.09621 * 246.67805 * 15 10 8 18 18 N 1.47869 * 105.10736 * 288.77555 * 17 15 10 19 19 C 1.36936 * 126.94862 * 181.98030 * 18 17 15 20 20 H 1.07996 * 120.00415 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99535 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46973 * 60.00364 * 23 21 19 25 25 H 1.48502 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47385 * 300.00317 * 23 21 19 27 27 C 1.38876 * 119.11344 * 0.02562 * 6 4 3 28 28 O 1.35674 * 119.68174 * 179.97438 * 27 6 4 29 29 N 1.31930 * 119.58040 * 179.72321 * 2 1 3 30 30 H 1.09001 * 109.46953 * 89.99992 * 1 2 3 31 31 H 1.09000 * 109.47318 * 209.99590 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.00221 * 1 2 3 33 33 H 1.07995 * 120.35632 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47142 * 89.99806 * 5 4 3 35 35 H 1.08999 * 109.47108 * 210.00293 * 5 4 3 36 36 H 1.09005 * 109.46582 * 329.99753 * 5 4 3 37 37 H 1.08997 * 109.47072 * 210.00094 * 7 6 4 38 38 H 1.08996 * 109.47071 * 330.00789 * 7 6 4 39 39 H 1.08998 * 110.31145 * 300.92705 * 11 10 8 40 40 H 1.08998 * 110.31485 * 63.11206 * 11 10 8 41 41 H 1.08998 * 112.36905 * 191.52438 * 14 12 11 42 42 H 1.09008 * 112.36243 * 64.09202 * 14 12 11 43 43 H 1.09008 * 110.31474 * 47.67869 * 17 15 10 44 44 H 1.08992 * 110.31896 * 169.86486 * 17 15 10 45 45 H 0.97002 * 120.00114 * 180.02562 * 22 21 19 46 46 H 0.96706 * 113.99896 * 90.00354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3540 2.4848 0.0011 6 6 4.2305 -0.0263 0.0016 7 6 5.7363 -0.0855 0.0028 8 6 6.2370 -0.1047 1.4241 9 8 5.4488 -0.0739 2.3452 10 7 7.5610 -0.1572 1.6714 11 6 8.6504 -0.2074 0.6728 12 6 9.9639 -0.3062 1.5086 13 1 10.8442 -0.6953 0.9970 14 6 9.4333 -1.1441 2.7268 15 6 8.2235 -0.1823 3.0090 16 1 7.5833 -0.4231 3.8578 17 6 8.9837 1.1781 3.0821 18 7 10.1074 1.0432 2.1304 19 6 11.0823 1.9693 1.8715 20 1 11.8550 1.7522 1.1489 21 6 11.0774 3.1870 2.5378 22 7 10.1360 3.4514 3.4188 23 14 12.4078 4.4500 2.1851 24 1 12.3646 4.8266 0.7493 25 1 12.1786 5.6567 3.0198 26 1 13.7373 3.8712 2.5053 27 6 3.4803 -1.1950 0.0016 28 8 4.1093 -2.3971 0.0021 29 7 2.1583 -1.1473 0.0055 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6478 2.1356 -0.0004 34 1 4.5410 2.7958 1.0289 35 1 5.3040 2.3371 -0.5124 36 1 3.7791 3.2553 -0.5128 37 1 6.0648 -0.9893 -0.5103 38 1 6.1348 0.7893 -0.5110 39 1 8.5388 -1.0842 0.0350 40 1 8.6543 0.7013 0.0710 41 1 10.1437 -1.1704 3.5530 42 1 9.1099 -2.1430 2.4337 43 1 8.3279 1.9948 2.7801 44 1 9.3603 1.3474 4.0908 45 1 10.1324 4.3025 3.8842 46 1 4.2913 -2.7455 0.8857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032583904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:03 Heat of formation + Delta-G solvation = 14.311461 kcal Electronic energy + Delta-G solvation = -29109.979731 eV Core-core repulsion = 25194.602640 eV Total energy + Delta-G solvation = -3915.377091 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.91427 -39.96690 -37.90844 -37.27202 -34.75938 -33.67574 -32.03468 -31.64327 -30.24451 -28.98095 -28.57805 -27.75721 -25.93743 -25.22281 -23.52768 -22.72898 -21.26931 -20.32179 -19.87667 -18.49095 -18.33314 -17.34440 -17.20413 -16.43039 -15.87120 -15.64139 -15.31949 -14.90185 -14.50138 -14.25306 -13.95177 -13.69128 -13.51602 -13.34483 -13.15945 -13.00387 -12.81537 -12.40369 -12.24658 -12.01037 -11.96373 -11.82421 -11.73327 -11.54842 -11.51314 -11.35600 -11.05082 -10.89733 -10.82147 -10.64689 -10.31460 -10.13946 -9.69630 -9.64113 -9.45335 -9.35221 -8.77178 -8.62262 -8.05788 -6.98289 -5.81640 -3.16457 0.94789 1.18151 2.97541 3.24917 3.33769 3.38329 3.40188 3.45516 3.79680 4.37436 4.41819 4.54493 4.81063 4.81521 4.82487 5.09415 5.13494 5.16437 5.23653 5.28021 5.33277 5.40386 5.42287 5.51026 5.54834 5.58748 5.63228 5.69910 5.72472 5.79332 5.88613 5.98187 6.05248 6.12186 6.24185 6.28213 6.35798 6.43263 6.51798 6.54577 6.64292 7.37084 7.42815 7.44621 7.66409 7.91412 8.02658 8.06130 8.52583 9.05182 9.66137 10.35008 11.30230 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.003175 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.820857 B = 8817.493273 C = 9676.856436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.146 3.854 3 C -0.183 4.183 4 C -0.009 4.009 5 C -0.122 4.122 6 C -0.129 4.129 7 C -0.095 4.095 8 C 0.532 3.468 9 O -0.554 6.554 10 N -0.605 5.605 11 C 0.082 3.918 12 C 0.141 3.859 13 H 0.107 0.893 14 C -0.151 4.151 15 C 0.097 3.903 16 H 0.112 0.888 17 C 0.175 3.825 18 N -0.597 5.597 19 C -0.233 4.233 20 H 0.080 0.920 21 C -0.005 4.005 22 N -0.919 5.919 23 Si 0.913 3.087 24 H -0.285 1.285 25 H -0.290 1.290 26 H -0.284 1.284 27 C 0.330 3.670 28 O -0.483 6.483 29 N -0.509 5.509 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.136 0.864 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.046 0.954 44 H 0.055 0.945 45 H 0.254 0.746 46 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.422 -7.265 -7.415 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.009 3.991 3 C -0.203 4.203 4 C -0.017 4.017 5 C -0.178 4.178 6 C -0.133 4.133 7 C -0.135 4.135 8 C 0.320 3.680 9 O -0.433 6.433 10 N -0.338 5.338 11 C -0.043 4.043 12 C 0.032 3.968 13 H 0.125 0.875 14 C -0.191 4.191 15 C -0.005 4.005 16 H 0.130 0.870 17 C 0.050 3.950 18 N -0.321 5.321 19 C -0.361 4.361 20 H 0.098 0.902 21 C -0.202 4.202 22 N -0.566 5.566 23 Si 0.743 3.257 24 H -0.212 1.212 25 H -0.216 1.216 26 H -0.211 1.211 27 C 0.151 3.849 28 O -0.290 6.290 29 N -0.229 5.229 30 H 0.096 0.904 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.154 0.846 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.065 0.935 44 H 0.073 0.927 45 H 0.065 0.935 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.285 -7.702 -7.456 17.071 hybrid contribution 1.248 1.428 0.287 1.918 sum -12.038 -6.275 -7.170 15.352 Atomic orbital electron populations 1.20711 0.88666 1.03512 1.03009 1.20920 0.96595 0.87243 0.94371 1.21766 0.93887 0.99300 1.05378 1.20089 0.93677 0.94976 0.92914 1.20919 0.99912 0.93198 1.03790 1.20150 0.95662 0.92786 1.04719 1.20516 0.91389 1.05615 0.95969 1.19916 0.80931 0.76657 0.90493 1.90672 1.54464 1.51734 1.46452 1.49218 1.04253 1.71014 1.09307 1.23300 0.88920 1.00344 0.91743 1.23158 0.93614 0.87661 0.92375 0.87531 1.24170 0.97688 0.96819 1.00437 1.24354 0.91797 0.99158 0.85191 0.86970 1.21914 0.87986 0.90502 0.94609 1.45228 1.29137 1.12221 1.45534 1.19000 1.03294 0.94025 1.19774 0.90187 1.24819 0.98622 0.97931 0.98822 1.69905 1.33935 1.23801 1.28929 0.86198 0.81117 0.80892 0.77505 1.21150 1.21625 1.21087 1.18774 0.86548 0.84816 0.94779 1.84672 1.76592 1.33611 1.34127 1.66947 1.09495 1.30699 1.15748 0.90424 0.90482 0.90560 0.84567 0.89685 0.90650 0.90820 0.87583 0.87750 0.92623 0.91062 0.89797 0.91629 0.93542 0.92678 0.93523 0.74082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.88 10.17 36.01 0.37 -0.52 16 2 C 0.15 1.84 6.78 -82.60 -0.56 1.28 16 3 C -0.18 -2.20 9.44 -39.43 -0.37 -2.57 16 4 C -0.01 -0.12 5.91 -104.35 -0.62 -0.74 16 5 C -0.12 -1.46 9.67 36.01 0.35 -1.11 16 6 C -0.13 -1.88 4.40 -104.31 -0.46 -2.34 16 7 C -0.09 -1.32 4.54 -29.03 -0.13 -1.45 16 8 C 0.53 9.14 7.89 -10.98 -0.09 9.06 16 9 O -0.55 -11.23 16.38 5.56 0.09 -11.14 16 10 N -0.60 -10.50 2.95 -156.78 -0.46 -10.96 16 11 C 0.08 1.31 6.01 -1.69 -0.01 1.30 16 12 C 0.14 2.48 5.52 -62.57 -0.35 2.14 16 13 H 0.11 1.68 8.14 -51.93 -0.42 1.26 16 14 C -0.15 -2.46 6.81 -22.28 -0.15 -2.61 16 15 C 0.10 1.82 5.24 -62.54 -0.33 1.49 16 16 H 0.11 2.06 8.05 -51.93 -0.42 1.65 16 17 C 0.17 4.06 4.77 -1.68 -0.01 4.06 16 18 N -0.60 -13.83 3.03 -156.37 -0.47 -14.30 16 19 C -0.23 -6.01 10.37 -15.06 -0.16 -6.17 16 20 H 0.08 1.96 7.83 -52.49 -0.41 1.55 16 21 C -0.01 -0.14 5.49 -17.43 -0.10 -0.23 16 22 N -0.92 -26.14 10.56 55.49 0.59 -25.55 16 23 Si 0.91 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 27 C 0.33 4.95 7.72 -17.12 -0.13 4.81 16 28 O -0.48 -6.49 12.62 -18.72 -0.24 -6.73 16 29 N -0.51 -7.63 10.30 -9.55 -0.10 -7.72 16 30 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.08 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.07 0.89 6.08 -51.93 -0.32 0.57 16 36 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 37 H 0.11 1.32 7.55 -51.93 -0.39 0.93 16 38 H 0.10 1.35 6.07 -51.93 -0.32 1.03 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 43 H 0.05 1.24 7.68 -51.92 -0.40 0.85 16 44 H 0.06 1.43 7.46 -51.93 -0.39 1.04 16 45 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 46 H 0.40 4.17 9.06 45.56 0.41 4.58 16 LS Contribution 374.90 15.07 5.65 5.65 Total: -1.00 -33.07 374.90 -8.71 -41.78 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -6.01 Total: 6.39 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -2.74 Total: 6.40 kcal Atomic # 7 Polarization: -58.10 SS G_CDS: -0.45 Total: -58.55 kcal Atomic # 8 Polarization: -17.72 SS G_CDS: -0.15 Total: -17.87 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -33.07 -8.71 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032583904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.094 kcal (2) G-P(sol) polarization free energy of solvation -33.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds