Wall clock time and date at job start Tue Mar 31 2020 17:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38093 * 119.58173 * 2 1 4 4 C 1.38780 * 119.28603 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.75936 * 180.02562 * 4 3 2 6 6 C 1.38427 * 118.48566 * 359.97438 * 4 3 2 7 7 C 1.50703 * 120.44202 * 180.02562 * 6 4 3 8 8 C 1.50702 * 109.46564 * 90.00388 * 7 6 4 9 9 O 1.21273 * 120.00282 * 0.02562 * 8 7 6 10 10 N 1.34783 * 119.99278 * 179.97438 * 8 7 6 11 11 C 1.47866 * 126.94778 * 359.68938 * 10 8 7 12 12 C 1.55999 * 105.11320 * 181.90468 * 11 10 8 13 13 H 1.08998 * 116.81826 * 159.40093 * 12 11 10 14 14 C 1.57088 * 99.48579 * 33.13113 * 12 11 10 15 15 C 1.49292 * 126.93812 * 179.97438 * 10 8 7 16 16 H 1.09001 * 116.15337 * 15.82683 * 15 10 8 17 17 C 1.56012 * 104.09621 * 246.67805 * 15 10 8 18 18 N 1.47869 * 105.10736 * 288.77555 * 17 15 10 19 19 C 1.36936 * 126.94862 * 181.98030 * 18 17 15 20 20 H 1.07996 * 120.00415 * 180.02562 * 19 18 17 21 21 C 1.38816 * 119.99535 * 0.02562 * 19 18 17 22 22 N 1.31616 * 120.00319 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 119.99685 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46973 * 60.00364 * 23 21 19 25 25 H 1.48502 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47385 * 300.00317 * 23 21 19 27 27 C 1.38876 * 119.11344 * 0.02562 * 6 4 3 28 28 O 1.35674 * 119.68174 * 179.97438 * 27 6 4 29 29 N 1.31930 * 119.58040 * 179.72321 * 2 1 3 30 30 H 1.09001 * 109.46953 * 89.99992 * 1 2 3 31 31 H 1.09000 * 109.47318 * 209.99590 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.00221 * 1 2 3 33 33 H 1.07995 * 120.35632 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47142 * 89.99806 * 5 4 3 35 35 H 1.08999 * 109.47108 * 210.00293 * 5 4 3 36 36 H 1.09005 * 109.46582 * 329.99753 * 5 4 3 37 37 H 1.08997 * 109.47072 * 210.00094 * 7 6 4 38 38 H 1.08996 * 109.47071 * 330.00789 * 7 6 4 39 39 H 1.08998 * 110.31145 * 300.92705 * 11 10 8 40 40 H 1.08998 * 110.31485 * 63.11206 * 11 10 8 41 41 H 1.08998 * 112.36905 * 191.52438 * 14 12 11 42 42 H 1.09008 * 112.36243 * 64.09202 * 14 12 11 43 43 H 1.09008 * 110.31474 * 47.67869 * 17 15 10 44 44 H 1.08992 * 110.31896 * 169.86486 * 17 15 10 45 45 H 0.97002 * 120.00114 * 180.02562 * 22 21 19 46 46 H 0.96706 * 113.99896 * 90.00354 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1888 1.2009 0.0000 4 6 3.5766 1.1938 0.0005 5 6 4.3540 2.4848 0.0011 6 6 4.2305 -0.0263 0.0016 7 6 5.7363 -0.0855 0.0028 8 6 6.2370 -0.1047 1.4241 9 8 5.4488 -0.0739 2.3452 10 7 7.5610 -0.1572 1.6714 11 6 8.6504 -0.2074 0.6728 12 6 9.9639 -0.3062 1.5086 13 1 10.8442 -0.6953 0.9970 14 6 9.4333 -1.1441 2.7268 15 6 8.2235 -0.1823 3.0090 16 1 7.5833 -0.4231 3.8578 17 6 8.9837 1.1781 3.0821 18 7 10.1074 1.0432 2.1304 19 6 11.0823 1.9693 1.8715 20 1 11.8550 1.7522 1.1489 21 6 11.0774 3.1870 2.5378 22 7 10.1360 3.4514 3.4188 23 14 12.4078 4.4500 2.1851 24 1 12.3646 4.8266 0.7493 25 1 12.1786 5.6567 3.0198 26 1 13.7373 3.8712 2.5053 27 6 3.4803 -1.1950 0.0016 28 8 4.1093 -2.3971 0.0021 29 7 2.1583 -1.1473 0.0055 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5138 33 1 1.6478 2.1356 -0.0004 34 1 4.5410 2.7958 1.0289 35 1 5.3040 2.3371 -0.5124 36 1 3.7791 3.2553 -0.5128 37 1 6.0648 -0.9893 -0.5103 38 1 6.1348 0.7893 -0.5110 39 1 8.5388 -1.0842 0.0350 40 1 8.6543 0.7013 0.0710 41 1 10.1437 -1.1704 3.5530 42 1 9.1099 -2.1430 2.4337 43 1 8.3279 1.9948 2.7801 44 1 9.3603 1.3474 4.0908 45 1 10.1324 4.3025 3.8842 46 1 4.2913 -2.7455 0.8857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032583904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:02 Heat of formation + Delta-G solvation = -9.597283 kcal Electronic energy + Delta-G solvation = -29111.016492 eV Core-core repulsion = 25194.602640 eV Total energy + Delta-G solvation = -3916.413852 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.00912 -41.34679 -39.33921 -38.26047 -35.79197 -35.44874 -33.43575 -32.86309 -31.44967 -30.42823 -30.19405 -28.70748 -26.97985 -26.92633 -25.10949 -23.79993 -22.49197 -21.58953 -21.40064 -19.99555 -19.36340 -18.84095 -18.28051 -17.97343 -17.40775 -16.68425 -16.60872 -16.29579 -15.96961 -15.67384 -15.13308 -14.95736 -14.82690 -14.45735 -14.29146 -13.89034 -13.86601 -13.77677 -13.54233 -13.36024 -13.19338 -13.10061 -12.90990 -12.81553 -12.78953 -12.67268 -12.52362 -12.48825 -12.29674 -12.15258 -12.08521 -11.85900 -11.51752 -11.04300 -10.71970 -10.46554 -10.40307 -9.63366 -9.52960 -8.89828 -7.83442 -5.19017 -0.04529 0.17028 1.47760 1.49969 1.56044 1.62118 1.98713 2.41924 2.49376 2.81268 3.33973 3.39489 3.43747 3.64285 3.64695 3.79041 3.86133 3.88246 3.91113 4.05167 4.20556 4.22499 4.34274 4.42271 4.51828 4.58545 4.61454 4.66471 4.72532 4.78090 4.80405 4.85836 4.95447 4.97087 5.03050 5.09325 5.15225 5.19625 5.25963 5.30835 5.46114 5.54265 5.62016 5.66462 6.10913 6.49634 6.67114 6.92596 7.04110 7.15662 7.72280 8.42670 9.27267 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018590 B = 0.003175 C = 0.002893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.820857 B = 8817.493273 C = 9676.856436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.136 3.864 3 C -0.183 4.183 4 C -0.023 4.023 5 C -0.119 4.119 6 C -0.149 4.149 7 C -0.081 4.081 8 C 0.531 3.469 9 O -0.589 6.589 10 N -0.607 5.607 11 C 0.089 3.911 12 C 0.135 3.865 13 H 0.135 0.865 14 C -0.130 4.130 15 C 0.101 3.899 16 H 0.111 0.889 17 C 0.189 3.811 18 N -0.616 5.616 19 C -0.230 4.230 20 H 0.095 0.905 21 C -0.070 4.070 22 N -0.956 5.956 23 Si 0.975 3.025 24 H -0.276 1.276 25 H -0.304 1.304 26 H -0.275 1.275 27 C 0.314 3.686 28 O -0.487 6.487 29 N -0.534 5.534 30 H 0.094 0.906 31 H 0.073 0.927 32 H 0.099 0.901 33 H 0.167 0.833 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.056 0.944 41 H 0.078 0.922 42 H 0.103 0.897 43 H -0.002 1.002 44 H 0.015 0.985 45 H 0.243 0.757 46 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.631 -8.603 -9.641 18.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.001 4.001 3 C -0.203 4.203 4 C -0.030 4.030 5 C -0.175 4.175 6 C -0.153 4.153 7 C -0.121 4.121 8 C 0.321 3.679 9 O -0.471 6.471 10 N -0.340 5.340 11 C -0.035 4.035 12 C 0.028 3.972 13 H 0.153 0.847 14 C -0.169 4.169 15 C -0.002 4.002 16 H 0.129 0.871 17 C 0.063 3.937 18 N -0.341 5.341 19 C -0.359 4.359 20 H 0.113 0.887 21 C -0.263 4.263 22 N -0.606 5.606 23 Si 0.804 3.196 24 H -0.202 1.202 25 H -0.231 1.231 26 H -0.201 1.201 27 C 0.136 3.864 28 O -0.296 6.296 29 N -0.255 5.255 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.185 0.815 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.119 0.881 37 H 0.144 0.856 38 H 0.132 0.868 39 H 0.121 0.879 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.122 0.878 43 H 0.016 0.984 44 H 0.033 0.967 45 H 0.052 0.948 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -13.471 -9.097 -9.728 18.944 hybrid contribution 1.251 1.809 0.974 2.405 sum -12.221 -7.288 -8.754 16.706 Atomic orbital electron populations 1.20824 0.85974 1.04480 1.04323 1.21622 0.98433 0.86897 0.93112 1.22134 0.93485 1.00507 1.04146 1.20390 0.94674 0.95082 0.92875 1.20910 1.00303 0.93525 1.02741 1.20270 0.95879 0.93227 1.05889 1.20446 0.91260 1.06898 0.93496 1.20501 0.80393 0.75448 0.91578 1.90652 1.55317 1.53185 1.47925 1.49275 1.04820 1.70946 1.08916 1.23235 0.87223 1.01787 0.91221 1.23585 0.95500 0.84934 0.93161 0.84716 1.24070 0.95700 0.97674 0.99445 1.24145 0.92673 0.97068 0.86364 0.87145 1.21502 0.87837 0.91841 0.92550 1.45478 1.28417 1.14237 1.45961 1.19491 1.03480 0.94249 1.18636 0.88694 1.25635 1.00868 1.00278 0.99510 1.70151 1.36110 1.23603 1.30690 0.85190 0.78970 0.78110 0.77290 1.20178 1.23083 1.20122 1.18976 0.86908 0.85272 0.95267 1.84628 1.76522 1.33296 1.35113 1.67018 1.09657 1.32021 1.16782 0.88779 0.90849 0.88257 0.81508 0.91804 0.90788 0.88084 0.85645 0.86831 0.87867 0.92533 0.90349 0.87832 0.98421 0.96712 0.94780 0.72936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.49 10.17 71.24 0.72 -0.77 16 2 C 0.14 3.24 6.78 42.51 0.29 3.53 16 3 C -0.18 -4.07 9.44 22.36 0.21 -3.86 16 4 C -0.02 -0.59 5.91 -19.69 -0.12 -0.70 16 5 C -0.12 -2.76 9.67 71.24 0.69 -2.07 16 6 C -0.15 -4.21 4.40 -19.67 -0.09 -4.29 16 7 C -0.08 -2.14 4.54 29.10 0.13 -2.01 16 8 C 0.53 17.93 7.89 87.66 0.69 18.62 16 9 O -0.59 -24.17 16.38 -3.01 -0.05 -24.22 16 10 N -0.61 -20.41 2.95 -768.33 -2.26 -22.67 16 11 C 0.09 2.61 6.01 87.16 0.52 3.13 16 12 C 0.13 4.39 5.52 46.93 0.26 4.65 16 13 H 0.14 3.68 8.14 -2.39 -0.02 3.66 16 14 C -0.13 -3.88 6.81 33.48 0.23 -3.66 16 15 C 0.10 3.76 5.24 46.94 0.25 4.00 16 16 H 0.11 4.14 8.05 -2.39 -0.02 4.12 16 17 C 0.19 9.17 4.77 87.16 0.42 9.58 16 18 N -0.62 -28.59 3.03 -648.62 -1.96 -30.55 16 19 C -0.23 -11.85 10.37 84.03 0.87 -10.98 16 20 H 0.10 4.50 7.83 -2.91 -0.02 4.48 16 21 C -0.07 -3.86 5.49 84.86 0.47 -3.40 16 22 N -0.96 -57.20 10.56 21.65 0.23 -56.97 16 23 Si 0.98 44.34 29.55 68.60 2.03 46.37 16 24 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.30 -14.35 7.11 99.48 0.71 -13.64 16 26 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 27 C 0.31 9.20 7.72 84.78 0.65 9.86 16 28 O -0.49 -12.61 12.62 -89.91 -1.14 -13.74 16 29 N -0.53 -15.58 10.30 -296.97 -3.06 -18.64 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.10 1.03 8.08 -2.39 -0.02 1.01 16 33 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 34 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.07 1.70 6.08 -2.39 -0.01 1.69 16 36 H 0.10 1.73 8.10 -2.38 -0.02 1.71 16 37 H 0.13 2.79 7.55 -2.39 -0.02 2.77 16 38 H 0.11 2.78 6.07 -2.39 -0.01 2.76 16 39 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 43 H 0.00 -0.14 7.68 -2.38 -0.02 -0.16 16 44 H 0.01 0.82 7.46 -2.39 -0.02 0.80 16 45 H 0.24 14.42 8.31 -92.71 -0.77 13.65 16 46 H 0.41 8.26 9.06 -74.05 -0.67 7.59 16 Total: -1.00 -75.91 374.90 0.32 -75.59 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.34 Total: 23.20 kcal Atomic # 6 Polarization: 15.44 SS G_CDS: 6.20 Total: 21.64 kcal Atomic # 7 Polarization: -121.78 SS G_CDS: -7.06 Total: -128.83 kcal Atomic # 8 Polarization: -36.78 SS G_CDS: -1.18 Total: -37.97 kcal Atomic # 14 Polarization: 44.34 SS G_CDS: 2.03 Total: 46.37 kcal Total: -75.91 0.32 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032583904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.994 kcal (2) G-P(sol) polarization free energy of solvation -75.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.591 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds