Wall clock time and date at job start Tue Mar 31 2020 17:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37995 * 120.82007 * 2 1 4 4 C 1.39126 * 119.26174 * 180.28121 * 3 2 1 5 5 O 1.35501 * 119.52755 * 179.74464 * 4 3 2 6 6 N 1.32440 * 120.95234 * 359.47344 * 4 3 2 7 7 C 1.31640 * 121.79721 * 0.24879 * 6 4 3 8 8 C 1.39568 * 120.62486 * 0.03053 * 7 6 4 9 9 C 1.47619 * 120.49724 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99578 * 125.61741 * 9 8 7 11 11 N 1.34768 * 119.99900 * 305.61917 * 9 8 7 12 12 C 1.46882 * 120.46668 * 3.69741 * 11 9 8 13 13 C 1.52862 * 109.01636 * 235.48752 * 12 11 9 14 14 C 1.52668 * 109.17695 * 307.81618 * 13 12 11 15 15 C 1.53483 * 113.62599 * 188.99722 * 14 13 12 16 16 N 1.47663 * 85.98848 * 137.70846 * 15 14 13 17 17 C 1.36943 * 134.45924 * 155.71545 * 16 15 14 18 18 H 1.07994 * 120.00303 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99522 * 359.95282 * 17 16 15 20 20 N 1.31616 * 120.00367 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46955 * 90.00090 * 21 19 17 23 23 H 1.48497 * 109.47168 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.47125 * 330.00110 * 21 19 17 25 25 C 1.47666 * 91.09078 * 335.68225 * 16 15 14 26 26 C 1.52675 * 113.18394 * 57.46104 * 14 13 12 27 27 C 1.46884 * 120.46611 * 183.97158 * 11 9 8 28 28 H 1.08996 * 109.47220 * 264.89630 * 1 2 3 29 29 H 1.08995 * 109.46906 * 24.89801 * 1 2 3 30 30 H 1.08997 * 109.46775 * 144.89245 * 1 2 3 31 31 H 1.07996 * 120.36959 * 0.02562 * 3 2 1 32 32 H 0.96697 * 114.00004 * 269.73659 * 5 4 3 33 33 H 1.07996 * 119.68954 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.59303 * 355.31256 * 12 11 9 35 35 H 1.09004 * 109.59167 * 115.75147 * 12 11 9 36 36 H 1.09005 * 109.60671 * 187.84348 * 13 12 11 37 37 H 1.08990 * 109.44691 * 67.69944 * 13 12 11 38 38 H 1.08998 * 113.78948 * 251.97814 * 15 14 13 39 39 H 1.08991 * 113.78908 * 23.43680 * 15 14 13 40 40 H 0.97003 * 120.00590 * 180.02562 * 20 19 17 41 41 H 1.09001 * 113.79148 * 270.05526 * 25 16 15 42 42 H 1.08999 * 113.79638 * 138.57962 * 25 16 15 43 43 H 1.08997 * 109.53098 * 182.51720 * 26 14 13 44 44 H 1.09005 * 109.59134 * 62.33608 * 26 14 13 45 45 H 1.08998 * 109.59237 * 244.26121 * 27 11 9 46 46 H 1.09004 * 109.58806 * 4.69245 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 -0.0060 5 8 4.3044 2.3077 -0.0112 6 7 4.2549 -0.0066 -0.0012 7 6 3.6205 -1.1601 0.0045 8 6 2.2256 -1.2044 0.0050 9 6 1.5171 -2.4995 0.0108 10 8 0.6877 -2.7347 0.8680 11 7 1.7899 -3.4209 -0.9340 12 6 2.8466 -3.1807 -1.9256 13 6 2.2545 -3.3195 -3.3280 14 6 1.5241 -4.6560 -3.4340 15 6 1.0769 -5.0010 -4.8611 16 7 1.5406 -6.3711 -4.5640 17 6 1.2354 -7.6139 -5.0515 18 1 1.7314 -8.4868 -4.6538 19 6 0.2880 -7.7516 -6.0567 20 7 -0.3172 -6.6878 -6.5409 21 14 -0.1280 -9.4467 -6.7223 22 1 -1.2435 -10.0282 -5.9332 23 1 -0.5352 -9.3333 -8.1458 24 1 1.0640 -10.3260 -6.6170 25 6 2.4662 -5.8642 -3.5311 26 6 0.4224 -4.8233 -2.3904 27 6 1.0306 -4.6770 -0.9904 28 1 -0.3633 -0.0914 1.0235 29 1 -0.3633 0.9321 -0.4326 30 1 -0.3633 -0.8407 -0.5910 31 1 1.6936 2.1314 0.0004 32 1 4.5071 2.6407 -0.8961 33 1 4.1849 -2.0809 0.0087 34 1 3.2462 -2.1748 -1.7974 35 1 3.6438 -3.9124 -1.7946 36 1 3.0540 -3.2815 -4.0680 37 1 1.5525 -2.5054 -3.5078 38 1 0.0005 -4.9248 -5.0151 39 1 1.6556 -4.4994 -5.6366 40 1 -0.9795 -6.7840 -7.2431 41 1 3.4578 -5.6190 -3.9114 42 1 2.4940 -6.4739 -2.6280 43 1 -0.0277 -5.8108 -2.4908 44 1 -0.3402 -4.0585 -2.5381 45 1 1.6972 -5.5163 -0.7921 46 1 0.2343 -4.6564 -0.2464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035794085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:32 Heat of formation + Delta-G solvation = 21.970411 kcal Electronic energy + Delta-G solvation = -28929.456379 eV Core-core repulsion = 25014.411405 eV Total energy + Delta-G solvation = -3915.044974 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.30633 -40.03138 -38.75223 -37.33508 -35.89183 -34.18909 -32.60319 -31.73847 -30.75488 -29.97988 -28.29574 -26.91210 -25.17833 -24.71664 -23.53118 -23.27704 -22.39912 -21.33792 -19.93120 -18.75340 -18.13640 -17.53350 -16.91242 -16.70453 -16.32019 -15.95393 -15.09434 -14.92598 -14.82197 -14.72687 -14.33452 -13.94321 -13.80277 -13.68926 -13.37768 -13.31950 -13.00377 -12.84417 -12.47608 -12.40163 -12.29686 -12.13622 -12.06663 -11.74655 -11.13713 -11.07438 -10.89742 -10.86672 -10.41283 -10.29870 -10.18892 -9.92256 -9.74026 -9.69578 -9.58777 -9.39064 -9.19804 -8.80272 -8.52602 -6.87362 -5.77497 -3.09241 0.35755 0.79150 2.46761 2.83789 3.17530 3.36242 3.37848 3.43035 3.44643 4.15781 4.23372 4.32282 4.44615 4.64207 4.84760 4.85715 4.99049 5.03643 5.16899 5.23308 5.27286 5.30887 5.34995 5.41306 5.45621 5.48672 5.64629 5.67319 5.80821 5.84851 5.89838 5.90970 6.04739 6.12894 6.22815 6.26991 6.37915 6.56739 6.60600 6.76807 6.82058 7.05872 7.21698 7.32775 7.35498 7.46991 7.56987 7.98041 8.02902 9.04388 9.70641 10.60414 11.39404 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002703 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.194789 B =10356.835680 C =10642.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.021 3.979 3 C -0.191 4.191 4 C 0.327 3.673 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.161 3.839 8 C -0.188 4.188 9 C 0.566 3.434 10 O -0.535 6.535 11 N -0.595 5.595 12 C 0.101 3.899 13 C -0.118 4.118 14 C -0.109 4.109 15 C 0.174 3.826 16 N -0.609 5.609 17 C -0.222 4.222 18 H 0.078 0.922 19 C -0.008 4.008 20 N -0.921 5.921 21 Si 0.909 3.091 22 H -0.288 1.288 23 H -0.291 1.291 24 H -0.282 1.282 25 C 0.126 3.874 26 C -0.096 4.096 27 C 0.113 3.887 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.147 0.853 32 H 0.404 0.596 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.062 0.938 38 H 0.072 0.928 39 H 0.024 0.976 40 H 0.253 0.747 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.089 0.911 44 H 0.060 0.940 45 H 0.071 0.929 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.732 16.719 11.477 21.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.013 3.987 3 C -0.212 4.212 4 C 0.149 3.851 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.002 3.998 8 C -0.193 4.193 9 C 0.352 3.648 10 O -0.412 6.412 11 N -0.327 5.327 12 C -0.021 4.021 13 C -0.157 4.157 14 C -0.111 4.111 15 C 0.048 3.952 16 N -0.335 5.335 17 C -0.349 4.349 18 H 0.096 0.904 19 C -0.204 4.204 20 N -0.568 5.568 21 Si 0.740 3.260 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.208 1.208 25 C 0.000 4.000 26 C -0.134 4.134 27 C -0.008 4.008 28 H 0.107 0.893 29 H 0.093 0.907 30 H 0.096 0.904 31 H 0.165 0.835 32 H 0.262 0.738 33 H 0.185 0.815 34 H 0.098 0.902 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.042 0.958 40 H 0.063 0.937 41 H 0.049 0.951 42 H 0.059 0.941 43 H 0.107 0.893 44 H 0.079 0.921 45 H 0.089 0.911 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.994 16.367 12.306 21.336 hybrid contribution -0.759 -0.794 -1.195 1.623 sum 5.234 15.573 11.111 19.833 Atomic orbital electron populations 1.20907 0.89016 1.03526 1.04120 1.20230 0.97295 0.90678 0.90470 1.21933 0.93737 0.99427 1.06134 1.19320 0.87067 0.85213 0.93456 1.84725 1.75940 1.34130 1.34117 1.67191 1.41861 0.98185 1.15378 1.22741 0.89994 0.95353 0.91678 1.20908 0.95469 0.94614 1.08344 1.17931 0.82204 0.82997 0.81641 1.90794 1.34398 1.79076 1.36940 1.48080 1.36426 1.18559 1.29619 1.21922 0.89751 1.01672 0.88784 1.21736 1.00292 0.98492 0.95135 1.22402 0.96733 0.92941 0.98989 1.22222 0.99891 0.83853 0.89213 1.45953 1.43499 1.01873 1.42134 1.19007 1.17857 0.82834 1.15230 0.90406 1.24754 0.99474 0.97220 0.98961 1.69810 1.29587 1.27010 1.30424 0.86163 0.78212 0.83470 0.78169 1.21561 1.21708 1.20764 1.22594 0.92877 0.91958 0.92549 1.21490 0.96861 1.03359 0.91679 1.21771 0.96079 0.84054 0.98910 0.89259 0.90692 0.90396 0.83537 0.73774 0.81545 0.90225 0.90629 0.90553 0.91884 0.90997 0.95792 0.93717 0.95135 0.94104 0.89278 0.92131 0.91059 0.89181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.08 9.11 36.01 0.33 -0.76 16 2 C 0.02 0.22 5.94 -103.96 -0.62 -0.40 16 3 C -0.19 -1.67 9.71 -39.34 -0.38 -2.06 16 4 C 0.33 3.22 7.74 -16.96 -0.13 3.09 16 5 O -0.48 -3.88 13.55 -18.19 -0.25 -4.13 16 6 N -0.51 -5.67 10.37 -12.96 -0.13 -5.81 16 7 C 0.16 1.68 8.59 -17.14 -0.15 1.54 16 8 C -0.19 -2.14 4.89 -104.82 -0.51 -2.65 16 9 C 0.57 7.53 6.24 -12.44 -0.08 7.45 16 10 O -0.53 -8.65 15.70 5.30 0.08 -8.57 16 11 N -0.59 -7.52 2.95 -174.15 -0.51 -8.03 16 12 C 0.10 1.12 5.44 -3.90 -0.02 1.10 16 13 C -0.12 -1.55 5.24 -26.97 -0.14 -1.69 16 14 C -0.11 -1.84 0.77 -154.42 -0.12 -1.96 16 15 C 0.17 3.86 6.64 -3.16 -0.02 3.84 16 16 N -0.61 -14.86 3.53 -179.78 -0.64 -15.50 16 17 C -0.22 -6.05 10.70 -15.06 -0.16 -6.22 16 18 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -26.77 11.39 55.49 0.63 -26.14 16 21 Si 0.91 21.88 29.55 -169.99 -5.02 16.86 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 24 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 25 C 0.13 2.38 7.73 -3.14 -0.02 2.36 16 26 C -0.10 -1.54 5.22 -26.72 -0.14 -1.68 16 27 C 0.11 1.57 6.29 -3.66 -0.02 1.54 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.50 8.07 -51.93 -0.42 0.08 16 30 H 0.08 0.83 7.30 -51.93 -0.38 0.45 16 31 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.40 1.19 9.06 45.56 0.41 1.60 16 33 H 0.17 1.45 7.39 -52.49 -0.39 1.06 16 34 H 0.08 0.77 4.65 -51.93 -0.24 0.53 16 35 H 0.08 0.77 8.07 -51.93 -0.42 0.35 16 36 H 0.08 0.97 8.12 -51.93 -0.42 0.55 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.80 7.12 -51.93 -0.37 1.43 16 39 H 0.02 0.55 8.09 -51.93 -0.42 0.13 16 40 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.03 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.04 0.74 7.41 -51.93 -0.38 0.36 16 43 H 0.09 1.67 8.01 -51.93 -0.42 1.25 16 44 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.95 7.49 -51.93 -0.39 0.56 16 46 H 0.09 1.29 6.99 -51.93 -0.36 0.93 16 LS Contribution 368.57 15.07 5.55 5.55 Total: -1.00 -33.81 368.57 -8.42 -42.24 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.85 Total: 0.34 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -2.29 Total: 3.20 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -0.65 Total: -55.48 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: -0.16 Total: -12.70 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -33.81 -8.42 -42.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035794085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.206 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds