Wall clock time and date at job start Tue Mar 31 2020 17:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37995 * 120.82007 * 2 1 4 4 C 1.39126 * 119.26174 * 180.28121 * 3 2 1 5 5 O 1.35501 * 119.52755 * 179.74464 * 4 3 2 6 6 N 1.32440 * 120.95234 * 359.47344 * 4 3 2 7 7 C 1.31640 * 121.79721 * 0.24879 * 6 4 3 8 8 C 1.39568 * 120.62486 * 0.03053 * 7 6 4 9 9 C 1.47619 * 120.49724 * 179.97438 * 8 7 6 10 10 O 1.21578 * 119.99578 * 125.61741 * 9 8 7 11 11 N 1.34768 * 119.99900 * 305.61917 * 9 8 7 12 12 C 1.46882 * 120.46668 * 3.69741 * 11 9 8 13 13 C 1.52862 * 109.01636 * 235.48752 * 12 11 9 14 14 C 1.52668 * 109.17695 * 307.81618 * 13 12 11 15 15 C 1.53483 * 113.62599 * 188.99722 * 14 13 12 16 16 N 1.47663 * 85.98848 * 137.70846 * 15 14 13 17 17 C 1.36943 * 134.45924 * 155.71545 * 16 15 14 18 18 H 1.07994 * 120.00303 * 179.97438 * 17 16 15 19 19 C 1.38814 * 119.99522 * 359.95282 * 17 16 15 20 20 N 1.31616 * 120.00367 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99852 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46955 * 90.00090 * 21 19 17 23 23 H 1.48497 * 109.47168 * 210.00114 * 21 19 17 24 24 H 1.48502 * 109.47125 * 330.00110 * 21 19 17 25 25 C 1.47666 * 91.09078 * 335.68225 * 16 15 14 26 26 C 1.52675 * 113.18394 * 57.46104 * 14 13 12 27 27 C 1.46884 * 120.46611 * 183.97158 * 11 9 8 28 28 H 1.08996 * 109.47220 * 264.89630 * 1 2 3 29 29 H 1.08995 * 109.46906 * 24.89801 * 1 2 3 30 30 H 1.08997 * 109.46775 * 144.89245 * 1 2 3 31 31 H 1.07996 * 120.36959 * 0.02562 * 3 2 1 32 32 H 0.96697 * 114.00004 * 269.73659 * 5 4 3 33 33 H 1.07996 * 119.68954 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.59303 * 355.31256 * 12 11 9 35 35 H 1.09004 * 109.59167 * 115.75147 * 12 11 9 36 36 H 1.09005 * 109.60671 * 187.84348 * 13 12 11 37 37 H 1.08990 * 109.44691 * 67.69944 * 13 12 11 38 38 H 1.08998 * 113.78948 * 251.97814 * 15 14 13 39 39 H 1.08991 * 113.78908 * 23.43680 * 15 14 13 40 40 H 0.97003 * 120.00590 * 180.02562 * 20 19 17 41 41 H 1.09001 * 113.79148 * 270.05526 * 25 16 15 42 42 H 1.08999 * 113.79638 * 138.57962 * 25 16 15 43 43 H 1.08997 * 109.53098 * 182.51720 * 26 14 13 44 44 H 1.09005 * 109.59134 * 62.33608 * 26 14 13 45 45 H 1.08998 * 109.59237 * 244.26121 * 27 11 9 46 46 H 1.09004 * 109.58806 * 4.69245 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1472 -0.0060 5 8 4.3044 2.3077 -0.0112 6 7 4.2549 -0.0066 -0.0012 7 6 3.6205 -1.1601 0.0045 8 6 2.2256 -1.2044 0.0050 9 6 1.5171 -2.4995 0.0108 10 8 0.6877 -2.7347 0.8680 11 7 1.7899 -3.4209 -0.9340 12 6 2.8466 -3.1807 -1.9256 13 6 2.2545 -3.3195 -3.3280 14 6 1.5241 -4.6560 -3.4340 15 6 1.0769 -5.0010 -4.8611 16 7 1.5406 -6.3711 -4.5640 17 6 1.2354 -7.6139 -5.0515 18 1 1.7314 -8.4868 -4.6538 19 6 0.2880 -7.7516 -6.0567 20 7 -0.3172 -6.6878 -6.5409 21 14 -0.1280 -9.4467 -6.7223 22 1 -1.2435 -10.0282 -5.9332 23 1 -0.5352 -9.3333 -8.1458 24 1 1.0640 -10.3260 -6.6170 25 6 2.4662 -5.8642 -3.5311 26 6 0.4224 -4.8233 -2.3904 27 6 1.0306 -4.6770 -0.9904 28 1 -0.3633 -0.0914 1.0235 29 1 -0.3633 0.9321 -0.4326 30 1 -0.3633 -0.8407 -0.5910 31 1 1.6936 2.1314 0.0004 32 1 4.5071 2.6407 -0.8961 33 1 4.1849 -2.0809 0.0087 34 1 3.2462 -2.1748 -1.7974 35 1 3.6438 -3.9124 -1.7946 36 1 3.0540 -3.2815 -4.0680 37 1 1.5525 -2.5054 -3.5078 38 1 0.0005 -4.9248 -5.0151 39 1 1.6556 -4.4994 -5.6366 40 1 -0.9795 -6.7840 -7.2431 41 1 3.4578 -5.6190 -3.9114 42 1 2.4940 -6.4739 -2.6280 43 1 -0.0277 -5.8108 -2.4908 44 1 -0.3402 -4.0585 -2.5381 45 1 1.6972 -5.5163 -0.7921 46 1 0.2343 -4.6564 -0.2464 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035794085.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:32 Heat of formation + Delta-G solvation = -3.205476 kcal Electronic energy + Delta-G solvation = -28930.548088 eV Core-core repulsion = 25014.411405 eV Total energy + Delta-G solvation = -3916.136682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18580 -41.13951 -39.98639 -38.03501 -37.16191 -34.94213 -34.42537 -32.85073 -32.09779 -31.04633 -29.08238 -28.58714 -26.75356 -25.83969 -24.72953 -24.37078 -23.26823 -22.85129 -21.04539 -19.43112 -19.22787 -18.68582 -18.46456 -17.89431 -17.22837 -16.86197 -16.81808 -16.15486 -16.05242 -15.62637 -15.58457 -15.29380 -15.08218 -14.70643 -14.40266 -14.13829 -14.04318 -13.91835 -13.84044 -13.59027 -13.38215 -13.10451 -13.08560 -12.91551 -12.80949 -12.70931 -12.62737 -12.19275 -12.13743 -11.64510 -11.55696 -11.36421 -11.09034 -10.95870 -10.80071 -10.65007 -10.47567 -9.98514 -9.64101 -8.85251 -7.87507 -5.19064 -0.39068 0.06991 1.45282 1.46473 1.49205 1.54689 1.89001 2.45471 2.49071 2.65012 3.31570 3.34003 3.43791 3.52640 3.57458 3.62685 3.93044 3.93867 3.99050 4.15706 4.21065 4.30468 4.36705 4.41519 4.58050 4.60875 4.66323 4.69136 4.69995 4.76762 4.79139 4.89469 4.94326 5.02655 5.04527 5.15566 5.18080 5.21021 5.31178 5.34062 5.39552 5.49620 5.61651 5.76743 5.99033 6.31960 6.56209 6.80081 6.96190 7.01187 7.65332 8.62294 9.29143 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.024338 B = 0.002703 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1150.194789 B =10356.835680 C =10642.205853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.015 3.985 3 C -0.183 4.183 4 C 0.328 3.672 5 O -0.488 6.488 6 N -0.527 5.527 7 C 0.163 3.837 8 C -0.205 4.205 9 C 0.570 3.430 10 O -0.569 6.569 11 N -0.593 5.593 12 C 0.107 3.893 13 C -0.111 4.111 14 C -0.082 4.082 15 C 0.168 3.832 16 N -0.639 5.639 17 C -0.228 4.228 18 H 0.081 0.919 19 C -0.068 4.068 20 N -0.953 5.953 21 Si 0.973 3.027 22 H -0.287 1.287 23 H -0.297 1.297 24 H -0.270 1.270 25 C 0.129 3.871 26 C -0.089 4.089 27 C 0.125 3.875 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.058 0.942 31 H 0.174 0.826 32 H 0.426 0.574 33 H 0.183 0.817 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.088 0.912 37 H 0.065 0.935 38 H 0.033 0.967 39 H 0.015 0.985 40 H 0.246 0.754 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.081 0.919 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.568 18.133 12.523 23.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.007 3.993 3 C -0.204 4.204 4 C 0.150 3.850 5 O -0.299 6.299 6 N -0.246 5.246 7 C 0.005 3.995 8 C -0.210 4.210 9 C 0.358 3.642 10 O -0.449 6.449 11 N -0.325 5.325 12 C -0.015 4.015 13 C -0.150 4.150 14 C -0.083 4.083 15 C 0.043 3.957 16 N -0.365 5.365 17 C -0.357 4.357 18 H 0.099 0.901 19 C -0.261 4.261 20 N -0.603 5.603 21 Si 0.801 3.199 22 H -0.214 1.214 23 H -0.223 1.223 24 H -0.195 1.195 25 C 0.005 3.995 26 C -0.127 4.127 27 C 0.003 3.997 28 H 0.102 0.898 29 H 0.120 0.880 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.288 0.712 33 H 0.200 0.800 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.083 0.917 38 H 0.052 0.948 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.074 0.926 45 H 0.100 0.900 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 7.881 17.803 13.355 23.610 hybrid contribution -1.292 -1.139 -1.500 2.284 sum 6.589 16.664 11.855 21.486 Atomic orbital electron populations 1.20900 0.88644 1.04112 1.03668 1.20421 0.97727 0.90877 0.90294 1.22129 0.93384 0.99950 1.04956 1.19536 0.87609 0.85360 0.92505 1.84679 1.75726 1.33356 1.36158 1.67245 1.42358 0.98734 1.16306 1.22926 0.89588 0.95887 0.91093 1.20802 0.95931 0.93833 1.10444 1.18201 0.81584 0.83449 0.80967 1.90774 1.36019 1.79743 1.38335 1.48092 1.36493 1.17966 1.29917 1.22026 0.89313 1.03631 0.86554 1.21684 1.00348 0.95759 0.97171 1.22100 0.96203 0.94690 0.95287 1.22166 0.97497 0.83622 0.92464 1.46326 1.45252 1.01695 1.43240 1.19394 1.17201 0.84449 1.14632 0.90104 1.25542 1.00060 1.00556 0.99937 1.70003 1.30394 1.28837 1.31031 0.85162 0.78116 0.79701 0.76874 1.21448 1.22325 1.19476 1.22786 0.93058 0.92280 0.91390 1.21355 0.96683 1.01418 0.93241 1.21544 0.96279 0.85212 0.96714 0.89762 0.88032 0.92331 0.80885 0.71190 0.80019 0.88090 0.88760 0.89354 0.91653 0.94808 0.96728 0.94516 0.93239 0.92939 0.92407 0.92554 0.90035 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.96 9.11 71.24 0.65 -1.31 16 2 C 0.01 0.27 5.94 -19.43 -0.12 0.15 16 3 C -0.18 -2.66 9.71 22.43 0.22 -2.44 16 4 C 0.33 5.50 7.74 84.81 0.66 6.15 16 5 O -0.49 -6.38 13.55 -88.02 -1.19 -7.57 16 6 N -0.53 -10.37 10.37 -307.79 -3.19 -13.56 16 7 C 0.16 2.99 8.59 85.04 0.73 3.72 16 8 C -0.20 -4.25 4.89 -19.99 -0.10 -4.34 16 9 C 0.57 14.41 6.24 86.72 0.54 14.95 16 10 O -0.57 -18.19 15.70 -3.96 -0.06 -18.26 16 11 N -0.59 -13.93 2.95 -823.16 -2.43 -16.36 16 12 C 0.11 2.02 5.44 86.26 0.47 2.49 16 13 C -0.11 -2.67 5.24 30.44 0.16 -2.51 16 14 C -0.08 -2.70 0.77 -52.03 -0.04 -2.74 16 15 C 0.17 7.67 6.64 86.31 0.57 8.25 16 16 N -0.64 -31.56 3.53 -722.71 -2.55 -34.11 16 17 C -0.23 -12.62 10.70 84.03 0.90 -11.72 16 18 H 0.08 4.29 7.83 -2.91 -0.02 4.27 16 19 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 20 N -0.95 -57.44 11.39 21.65 0.25 -57.19 16 21 Si 0.97 45.82 29.55 68.60 2.03 47.85 16 22 H -0.29 -13.35 7.11 99.48 0.71 -12.65 16 23 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 24 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 25 C 0.13 4.71 7.73 86.32 0.67 5.37 16 26 C -0.09 -2.88 5.22 30.60 0.16 -2.72 16 27 C 0.12 3.34 6.29 86.42 0.54 3.88 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.10 1.10 8.07 -2.39 -0.02 1.08 16 30 H 0.06 1.21 7.30 -2.39 -0.02 1.19 16 31 H 0.17 1.50 8.06 -2.91 -0.02 1.48 16 32 H 0.43 1.13 9.06 -74.06 -0.67 0.46 16 33 H 0.18 2.60 7.39 -2.91 -0.02 2.57 16 34 H 0.10 1.59 4.65 -2.39 -0.01 1.58 16 35 H 0.09 1.52 8.07 -2.39 -0.02 1.51 16 36 H 0.09 1.99 8.12 -2.38 -0.02 1.97 16 37 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 38 H 0.03 1.78 7.12 -2.39 -0.02 1.77 16 39 H 0.01 0.70 8.09 -2.39 -0.02 0.68 16 40 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 41 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 42 H 0.05 1.80 7.41 -2.39 -0.02 1.78 16 43 H 0.06 2.24 8.01 -2.39 -0.02 2.23 16 44 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 45 H 0.08 2.04 7.49 -2.39 -0.02 2.02 16 46 H 0.08 2.40 6.99 -2.39 -0.02 2.38 16 Total: -1.00 -75.25 368.57 -0.33 -75.59 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: 0.34 Total: 9.83 kcal Atomic # 6 Polarization: 7.31 SS G_CDS: 6.48 Total: 13.79 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -7.93 Total: -121.22 kcal Atomic # 8 Polarization: -24.57 SS G_CDS: -1.25 Total: -25.83 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Total: -75.25 -0.33 -75.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035794085.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.381 kcal (2) G-P(sol) polarization free energy of solvation -75.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds