Wall clock time and date at job start Tue Mar 31 2020 16:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.40761 * 2 1 4 4 C 1.38332 * 119.45829 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.34930 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59468 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99868 * 124.97957 * 6 5 4 8 8 N 1.34774 * 119.99782 * 304.97160 * 6 5 4 9 9 C 1.46892 * 120.45914 * 184.19562 * 8 6 5 10 10 C 1.53360 * 108.74141 * 124.34699 * 9 8 6 11 11 C 1.52558 * 109.12850 * 52.25955 * 10 9 8 12 12 C 1.52960 * 114.06345 * 75.53850 * 11 10 9 13 13 N 1.47164 * 87.85245 * 139.44242 * 12 11 10 14 14 C 1.36934 * 135.99773 * 153.07888 * 13 12 11 15 15 H 1.08001 * 120.00483 * 354.94413 * 14 13 12 16 16 C 1.38819 * 119.99775 * 174.94390 * 14 13 12 17 17 N 1.31620 * 119.99757 * 354.95238 * 16 14 13 18 18 Si 1.86796 * 119.99817 * 174.95159 * 16 14 13 19 19 H 1.48497 * 109.47050 * 95.00157 * 18 16 14 20 20 H 1.48502 * 109.47062 * 214.99896 * 18 16 14 21 21 H 1.48505 * 109.47276 * 334.99731 * 18 16 14 22 22 C 1.47169 * 87.99812 * 333.33937 * 13 12 11 23 23 C 1.52554 * 113.42879 * 302.67070 * 11 10 9 24 24 C 1.46885 * 120.46420 * 4.17306 * 8 6 5 25 25 C 1.40280 * 118.80440 * 0.27032 * 5 4 3 26 26 O 1.35424 * 119.79723 * 179.72334 * 25 5 4 27 27 N 1.31878 * 119.40434 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47259 * 89.99757 * 1 2 3 29 29 H 1.09003 * 109.47151 * 209.99778 * 1 2 3 30 30 H 1.09003 * 109.47495 * 330.00148 * 1 2 3 31 31 H 1.08003 * 120.27217 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.82693 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.59778 * 4.56703 * 9 8 6 34 34 H 1.09005 * 109.59351 * 244.12082 * 9 8 6 35 35 H 1.09001 * 109.52707 * 292.36471 * 10 9 8 36 36 H 1.09006 * 109.58655 * 172.18596 * 10 9 8 37 37 H 1.08995 * 113.48579 * 24.69985 * 12 11 10 38 38 H 1.08998 * 113.48899 * 254.19127 * 12 11 10 39 39 H 0.96998 * 119.99453 * 179.97438 * 17 16 14 40 40 H 1.09000 * 113.48873 * 141.41569 * 22 13 12 41 41 H 1.09002 * 113.48341 * 271.91605 * 22 13 12 42 42 H 1.08996 * 109.53078 * 177.21719 * 23 11 10 43 43 H 1.09005 * 109.52534 * 297.42345 * 23 11 10 44 44 H 1.08998 * 109.59017 * 355.42459 * 24 8 6 45 45 H 1.09004 * 109.58984 * 115.86845 * 24 8 6 46 46 H 0.96702 * 113.99757 * 90.00538 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0016 7 8 6.2934 -0.7083 0.8646 8 7 6.4094 0.5617 -0.9540 9 6 7.8717 0.4375 -1.0171 10 6 8.2641 -0.0607 -2.4134 11 6 7.6170 0.8362 -3.4643 12 6 8.2933 2.1990 -3.6230 13 7 8.1082 2.0597 -5.0763 14 6 7.9721 2.9135 -6.1382 15 1 7.9094 3.9785 -5.9703 16 6 7.9146 2.4101 -7.4306 17 7 8.0903 1.1232 -7.6439 18 14 7.5878 3.5589 -8.8667 19 1 8.8790 3.9799 -9.4675 20 1 6.7727 2.8544 -9.8887 21 1 6.8520 4.7558 -8.3857 22 6 8.1269 0.6004 -4.8867 23 6 6.0973 0.9053 -3.3502 24 6 5.7203 1.3962 -1.9472 25 6 3.4757 -1.2041 -0.0058 26 8 4.0991 -2.4063 -0.0117 27 7 2.1545 -1.1489 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1344 0.0010 33 1 8.2107 -0.2758 -0.2659 34 1 8.3294 1.4097 -0.8339 35 1 7.9171 -1.0855 -2.5455 36 1 9.3481 -0.0261 -2.5224 37 1 9.3393 2.2031 -3.3167 38 1 7.7229 3.0202 -3.1890 39 1 8.0497 0.7714 -8.5469 40 1 7.4159 0.0708 -5.5209 41 1 9.1278 0.1704 -4.9238 42 1 5.7071 1.5981 -4.0957 43 1 5.6742 -0.0856 -3.5154 44 1 4.6423 1.3142 -1.8086 45 1 6.0284 2.4350 -1.8285 46 1 4.2796 -2.7600 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001035804635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:46 Heat of formation + Delta-G solvation = 25.676460 kcal Electronic energy + Delta-G solvation = -29000.979999 eV Core-core repulsion = 25086.095731 eV Total energy + Delta-G solvation = -3914.884268 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24417 -39.97627 -38.65019 -37.46177 -35.80442 -33.65129 -32.44606 -31.89700 -31.01630 -30.41433 -28.30134 -26.83604 -24.94319 -24.13624 -23.80960 -23.03196 -22.77297 -21.33950 -20.00893 -18.81661 -18.10086 -17.24943 -16.83709 -16.67152 -16.08675 -15.96162 -15.16726 -14.86907 -14.82229 -14.62242 -14.34529 -13.96625 -13.81715 -13.69169 -13.55707 -13.11078 -12.85707 -12.74531 -12.50319 -12.40156 -12.22238 -12.12248 -11.89070 -11.71833 -11.14537 -11.03052 -10.89876 -10.85886 -10.49807 -10.33747 -10.30708 -9.98079 -9.75831 -9.63441 -9.56889 -9.22474 -9.07298 -8.78952 -8.47982 -6.87962 -5.79042 -3.09843 0.43956 0.80915 2.51036 2.92954 3.16694 3.37058 3.41959 3.44454 3.45880 4.15144 4.31538 4.39921 4.44409 4.66655 4.92699 4.96327 5.01330 5.05237 5.13525 5.23123 5.24783 5.30424 5.37797 5.45813 5.56504 5.58396 5.63382 5.64305 5.68850 5.79383 5.84333 5.96422 6.10446 6.14725 6.25819 6.33887 6.46906 6.56514 6.60492 6.78683 6.80010 7.20639 7.24394 7.33638 7.36391 7.53323 7.58809 7.95808 8.05915 9.02436 9.69220 10.64951 11.39431 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.003191 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.979530 B = 8772.863204 C = 9832.152441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.187 4.187 4 C -0.028 4.028 5 C -0.197 4.197 6 C 0.573 3.427 7 O -0.541 6.541 8 N -0.594 5.594 9 C 0.116 3.884 10 C -0.114 4.114 11 C -0.116 4.116 12 C 0.127 3.873 13 N -0.608 5.608 14 C -0.218 4.218 15 H 0.080 0.920 16 C -0.007 4.007 17 N -0.918 5.918 18 Si 0.910 3.090 19 H -0.290 1.290 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.173 3.827 23 C -0.094 4.094 24 C 0.101 3.899 25 C 0.364 3.636 26 O -0.472 6.472 27 N -0.505 5.505 28 H 0.085 0.915 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.147 0.853 33 H 0.089 0.911 34 H 0.070 0.930 35 H 0.064 0.936 36 H 0.076 0.924 37 H 0.030 0.970 38 H 0.036 0.964 39 H 0.253 0.747 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.954 -0.740 18.410 21.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.030 3.970 3 C -0.207 4.207 4 C -0.054 4.054 5 C -0.204 4.204 6 C 0.360 3.640 7 O -0.419 6.419 8 N -0.326 5.326 9 C -0.005 4.005 10 C -0.153 4.153 11 C -0.118 4.118 12 C 0.001 3.999 13 N -0.333 5.333 14 C -0.346 4.346 15 H 0.098 0.902 16 C -0.204 4.204 17 N -0.565 5.565 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.216 1.216 21 H -0.206 1.206 22 C 0.047 3.953 23 C -0.133 4.133 24 C -0.021 4.021 25 C 0.184 3.816 26 O -0.280 6.280 27 N -0.225 5.225 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.164 0.836 32 H 0.164 0.836 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.095 0.905 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.045 0.955 42 H 0.107 0.893 43 H 0.079 0.921 44 H 0.099 0.901 45 H 0.093 0.907 46 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges -12.086 -1.718 17.889 21.657 hybrid contribution 0.626 1.242 -0.633 1.528 sum -11.460 -0.476 17.256 20.720 Atomic orbital electron populations 1.20822 0.88126 1.03859 1.03730 1.21242 0.97081 0.87170 0.91539 1.21903 0.94374 0.99668 1.04751 1.21709 0.94488 0.97022 0.92147 1.21001 0.95170 0.94621 1.09571 1.17816 0.85882 0.78795 0.81528 1.90753 1.70760 1.43180 1.37229 1.48028 1.07939 1.47483 1.29123 1.21675 0.78353 1.01956 0.98554 1.21739 1.00744 0.99601 0.93221 1.22083 0.94692 0.97481 0.97510 1.22394 0.96376 0.93984 0.87157 1.45637 1.83929 1.02494 1.01245 1.18921 1.43166 0.88686 0.83807 0.90244 1.24806 1.02305 0.96248 0.97038 1.69848 1.55241 1.11271 1.20138 0.86136 0.77737 0.79620 0.82472 1.21683 1.21631 1.20556 1.21932 0.97461 0.87093 0.88815 1.21413 0.94935 1.01962 0.94945 1.22076 0.96920 0.94354 0.88772 1.18973 0.86154 0.84732 0.91697 1.84683 1.76564 1.32383 1.34373 1.67093 1.09179 1.30483 1.15706 0.89695 0.90132 0.90151 0.83630 0.83569 0.89270 0.91211 0.91696 0.90529 0.95211 0.94613 0.93666 0.92129 0.95462 0.89297 0.92065 0.90092 0.90745 0.73248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.30 16 2 C 0.17 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.52 9.71 -39.50 -0.38 -1.91 16 4 C -0.03 -0.27 7.56 -38.89 -0.29 -0.56 16 5 C -0.20 -2.47 4.89 -104.69 -0.51 -2.98 16 6 C 0.57 8.25 6.85 -12.48 -0.09 8.16 16 7 O -0.54 -9.03 16.23 3.81 0.06 -8.96 16 8 N -0.59 -8.12 2.94 -173.86 -0.51 -8.63 16 9 C 0.12 1.57 6.34 -3.64 -0.02 1.55 16 10 C -0.11 -1.71 5.30 -26.77 -0.14 -1.85 16 11 C -0.12 -2.05 0.84 -155.02 -0.13 -2.18 16 12 C 0.13 2.48 7.63 -8.20 -0.06 2.42 16 13 N -0.61 -15.12 3.54 -184.66 -0.65 -15.78 16 14 C -0.22 -6.00 10.74 -15.06 -0.16 -6.17 16 15 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 16 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 17 N -0.92 -27.19 11.75 55.49 0.65 -26.53 16 18 Si 0.91 21.88 29.56 -169.99 -5.02 16.86 16 19 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C 0.17 3.98 6.39 -8.21 -0.05 3.93 16 23 C -0.09 -1.54 5.27 -26.78 -0.14 -1.68 16 24 C 0.10 1.31 5.55 -3.65 -0.02 1.29 16 25 C 0.36 4.79 7.76 -16.61 -0.13 4.66 16 26 O -0.47 -6.16 12.81 -19.44 -0.25 -6.41 16 27 N -0.50 -6.25 10.28 -9.21 -0.09 -6.35 16 28 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 29 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 31 H 0.15 0.72 8.06 -52.48 -0.42 0.30 16 32 H 0.15 1.11 7.48 -52.49 -0.39 0.72 16 33 H 0.09 1.23 6.99 -51.93 -0.36 0.86 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 1.10 8.10 -51.93 -0.42 0.68 16 37 H 0.03 0.58 8.06 -51.93 -0.42 0.16 16 38 H 0.04 0.65 7.53 -51.93 -0.39 0.26 16 39 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.06 1.56 7.48 -51.93 -0.39 1.17 16 41 H 0.03 0.66 8.09 -51.93 -0.42 0.24 16 42 H 0.09 1.64 7.95 -51.93 -0.41 1.23 16 43 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.08 0.94 4.65 -51.93 -0.24 0.70 16 45 H 0.07 0.89 7.60 -51.93 -0.39 0.50 16 46 H 0.41 3.65 9.06 45.56 0.41 4.06 16 LS Contribution 371.63 15.07 5.60 5.60 Total: -1.00 -34.65 371.63 -8.58 -43.22 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -5.93 Total: 1.86 kcal Atomic # 6 Polarization: 7.55 SS G_CDS: -2.43 Total: 5.13 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.61 Total: -57.29 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.19 Total: -15.38 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.65 -8.58 -43.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035804635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.899 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.676 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds