Wall clock time and date at job start Tue Mar 31 2020 16:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.40761 * 2 1 4 4 C 1.38332 * 119.45829 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.34930 * 0.02562 * 4 3 2 6 6 C 1.47525 * 120.59468 * 180.02562 * 5 4 3 7 7 O 1.21589 * 119.99868 * 124.97957 * 6 5 4 8 8 N 1.34774 * 119.99782 * 304.97160 * 6 5 4 9 9 C 1.46892 * 120.45914 * 184.19562 * 8 6 5 10 10 C 1.53360 * 108.74141 * 124.34699 * 9 8 6 11 11 C 1.52558 * 109.12850 * 52.25955 * 10 9 8 12 12 C 1.52960 * 114.06345 * 75.53850 * 11 10 9 13 13 N 1.47164 * 87.85245 * 139.44242 * 12 11 10 14 14 C 1.36934 * 135.99773 * 153.07888 * 13 12 11 15 15 H 1.08001 * 120.00483 * 354.94413 * 14 13 12 16 16 C 1.38819 * 119.99775 * 174.94390 * 14 13 12 17 17 N 1.31620 * 119.99757 * 354.95238 * 16 14 13 18 18 Si 1.86796 * 119.99817 * 174.95159 * 16 14 13 19 19 H 1.48497 * 109.47050 * 95.00157 * 18 16 14 20 20 H 1.48502 * 109.47062 * 214.99896 * 18 16 14 21 21 H 1.48505 * 109.47276 * 334.99731 * 18 16 14 22 22 C 1.47169 * 87.99812 * 333.33937 * 13 12 11 23 23 C 1.52554 * 113.42879 * 302.67070 * 11 10 9 24 24 C 1.46885 * 120.46420 * 4.17306 * 8 6 5 25 25 C 1.40280 * 118.80440 * 0.27032 * 5 4 3 26 26 O 1.35424 * 119.79723 * 179.72334 * 25 5 4 27 27 N 1.31878 * 119.40434 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.47259 * 89.99757 * 1 2 3 29 29 H 1.09003 * 109.47151 * 209.99778 * 1 2 3 30 30 H 1.09003 * 109.47495 * 330.00148 * 1 2 3 31 31 H 1.08003 * 120.27217 * 0.02562 * 3 2 1 32 32 H 1.08000 * 120.82693 * 180.02562 * 4 3 2 33 33 H 1.08996 * 109.59778 * 4.56703 * 9 8 6 34 34 H 1.09005 * 109.59351 * 244.12082 * 9 8 6 35 35 H 1.09001 * 109.52707 * 292.36471 * 10 9 8 36 36 H 1.09006 * 109.58655 * 172.18596 * 10 9 8 37 37 H 1.08995 * 113.48579 * 24.69985 * 12 11 10 38 38 H 1.08998 * 113.48899 * 254.19127 * 12 11 10 39 39 H 0.96998 * 119.99453 * 179.97438 * 17 16 14 40 40 H 1.09000 * 113.48873 * 141.41569 * 22 13 12 41 41 H 1.09002 * 113.48341 * 271.91605 * 22 13 12 42 42 H 1.08996 * 109.53078 * 177.21719 * 23 11 10 43 43 H 1.09005 * 109.52534 * 297.42345 * 23 11 10 44 44 H 1.08998 * 109.59017 * 355.42459 * 24 8 6 45 45 H 1.09004 * 109.58984 * 115.86845 * 24 8 6 46 46 H 0.96702 * 113.99757 * 90.00538 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2053 0.0000 4 6 3.5697 1.2065 0.0005 5 6 4.2355 -0.0249 0.0005 6 6 5.7097 -0.0814 0.0016 7 8 6.2934 -0.7083 0.8646 8 7 6.4094 0.5617 -0.9540 9 6 7.8717 0.4375 -1.0171 10 6 8.2641 -0.0607 -2.4134 11 6 7.6170 0.8362 -3.4643 12 6 8.2933 2.1990 -3.6230 13 7 8.1082 2.0597 -5.0763 14 6 7.9721 2.9135 -6.1382 15 1 7.9094 3.9785 -5.9703 16 6 7.9146 2.4101 -7.4306 17 7 8.0903 1.1232 -7.6439 18 14 7.5878 3.5589 -8.8667 19 1 8.8790 3.9799 -9.4675 20 1 6.7727 2.8544 -9.8887 21 1 6.8520 4.7558 -8.3857 22 6 8.1269 0.6004 -4.8867 23 6 6.0973 0.9053 -3.3502 24 6 5.7203 1.3962 -1.9472 25 6 3.4757 -1.2041 -0.0058 26 8 4.0991 -2.4063 -0.0117 27 7 2.1545 -1.1489 -0.0005 28 1 -0.3634 0.0000 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1344 0.0010 33 1 8.2107 -0.2758 -0.2659 34 1 8.3294 1.4097 -0.8339 35 1 7.9171 -1.0855 -2.5455 36 1 9.3481 -0.0261 -2.5224 37 1 9.3393 2.2031 -3.3167 38 1 7.7229 3.0202 -3.1890 39 1 8.0497 0.7714 -8.5469 40 1 7.4159 0.0708 -5.5209 41 1 9.1278 0.1704 -4.9238 42 1 5.7071 1.5981 -4.0957 43 1 5.6742 -0.0856 -3.5154 44 1 4.6423 1.3142 -1.8086 45 1 6.0284 2.4350 -1.8285 46 1 4.2796 -2.7600 0.8701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001035804635.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:46 Heat of formation + Delta-G solvation = -0.252564 kcal Electronic energy + Delta-G solvation = -29002.104365 eV Core-core repulsion = 25086.095731 eV Total energy + Delta-G solvation = -3916.008634 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.18921 -41.21538 -39.92711 -38.34723 -37.11493 -34.70260 -34.15143 -32.62292 -32.20907 -31.90941 -29.24987 -28.43330 -26.60514 -25.40723 -24.83305 -24.13257 -23.81398 -22.80963 -21.19119 -19.70176 -19.30325 -18.67747 -18.20575 -17.91715 -17.16471 -16.88194 -16.79002 -16.15043 -16.11856 -15.67896 -15.63906 -15.19915 -15.06619 -14.80166 -14.48138 -14.24469 -14.13273 -13.77258 -13.68655 -13.57056 -13.18186 -13.07382 -12.99550 -12.91065 -12.80023 -12.70025 -12.64078 -12.19511 -12.16229 -11.79278 -11.66387 -11.29983 -11.17837 -10.93729 -10.85104 -10.77143 -10.46822 -9.87229 -9.64481 -8.89800 -7.90671 -5.22103 -0.35693 0.06892 1.45764 1.46183 1.47197 1.56532 1.92818 2.39154 2.48299 2.65855 3.25767 3.32698 3.44370 3.56797 3.61463 3.71340 3.82243 3.98689 4.04724 4.11338 4.28482 4.30093 4.34919 4.42417 4.52208 4.64400 4.70160 4.72419 4.81316 4.82236 4.83726 4.90498 4.93072 5.01828 5.05517 5.12079 5.15145 5.18226 5.25564 5.31320 5.44783 5.52061 5.55623 5.70707 5.92505 6.27450 6.45358 6.81933 6.91243 6.98187 7.61972 8.64356 9.28407 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.003191 C = 0.002847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.979530 B = 8772.863204 C = 9832.152441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.158 3.842 3 C -0.173 4.173 4 C -0.027 4.027 5 C -0.217 4.217 6 C 0.574 3.426 7 O -0.570 6.570 8 N -0.595 5.595 9 C 0.121 3.879 10 C -0.107 4.107 11 C -0.088 4.088 12 C 0.132 3.868 13 N -0.636 5.636 14 C -0.223 4.223 15 H 0.089 0.911 16 C -0.070 4.070 17 N -0.957 5.957 18 Si 0.977 3.023 19 H -0.290 1.290 20 H -0.297 1.297 21 H -0.262 1.262 22 C 0.167 3.833 23 C -0.091 4.091 24 C 0.113 3.887 25 C 0.342 3.658 26 O -0.492 6.492 27 N -0.531 5.531 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.187 0.813 32 H 0.171 0.829 33 H 0.088 0.912 34 H 0.091 0.909 35 H 0.055 0.945 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.058 0.942 39 H 0.246 0.754 40 H 0.021 0.979 41 H 0.011 0.989 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.099 0.901 45 H 0.097 0.903 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.501 2.042 20.113 24.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.020 3.980 3 C -0.192 4.192 4 C -0.052 4.052 5 C -0.224 4.224 6 C 0.362 3.638 7 O -0.450 6.450 8 N -0.326 5.326 9 C -0.001 4.001 10 C -0.146 4.146 11 C -0.089 4.089 12 C 0.007 3.993 13 N -0.361 5.361 14 C -0.351 4.351 15 H 0.106 0.894 16 C -0.263 4.263 17 N -0.606 5.606 18 Si 0.805 3.195 19 H -0.217 1.217 20 H -0.224 1.224 21 H -0.186 1.186 22 C 0.041 3.959 23 C -0.129 4.129 24 C -0.009 4.009 25 C 0.163 3.837 26 O -0.302 6.302 27 N -0.252 5.252 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.204 0.796 32 H 0.189 0.811 33 H 0.106 0.894 34 H 0.109 0.891 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.040 0.960 41 H 0.028 0.972 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -13.637 1.090 19.635 23.931 hybrid contribution 1.057 0.355 -1.124 1.584 sum -12.580 1.444 18.511 22.427 Atomic orbital electron populations 1.20949 0.85785 1.05135 1.04497 1.21956 0.98705 0.87035 0.90270 1.22342 0.93892 1.00686 1.02315 1.22051 0.95334 0.96652 0.91171 1.20926 0.93973 0.95719 1.11744 1.18105 0.86715 0.77945 0.81041 1.90730 1.71599 1.44263 1.38434 1.48073 1.07983 1.47501 1.29016 1.21650 0.78579 1.02952 0.96877 1.21674 1.01033 0.98453 0.93447 1.21849 0.95649 0.96787 0.94627 1.22528 0.97369 0.95421 0.83938 1.45974 1.84038 1.03017 1.03113 1.19367 1.41404 0.89558 0.84785 0.89356 1.25655 1.03188 0.97658 0.99799 1.70051 1.57330 1.13215 1.19980 0.85076 0.77343 0.78127 0.78908 1.21731 1.22421 1.18625 1.21910 0.95884 0.86252 0.91879 1.21331 0.93610 1.00953 0.97021 1.22049 0.98031 0.94912 0.85927 1.19169 0.86738 0.84812 0.93001 1.84633 1.76863 1.33061 1.35664 1.67126 1.08926 1.32296 1.16829 0.88986 0.90689 0.87101 0.79570 0.81113 0.89380 0.89119 0.92600 0.89683 0.94075 0.92355 0.94522 0.96042 0.97155 0.91394 0.93339 0.88320 0.88530 0.72057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.99 10.16 71.24 0.72 -0.27 16 2 C 0.16 2.63 6.78 42.58 0.29 2.92 16 3 C -0.17 -2.14 9.71 22.32 0.22 -1.92 16 4 C -0.03 -0.42 7.56 22.72 0.17 -0.25 16 5 C -0.22 -5.12 4.89 -19.91 -0.10 -5.22 16 6 C 0.57 15.78 6.85 86.69 0.59 16.38 16 7 O -0.57 -18.73 16.23 -2.59 -0.04 -18.77 16 8 N -0.59 -15.02 2.94 -822.23 -2.42 -17.43 16 9 C 0.12 3.01 6.34 86.43 0.55 3.56 16 10 C -0.11 -3.11 5.30 30.57 0.16 -2.95 16 11 C -0.09 -3.06 0.84 -52.51 -0.04 -3.10 16 12 C 0.13 4.92 7.63 83.32 0.64 5.56 16 13 N -0.64 -31.77 3.54 -738.15 -2.61 -34.38 16 14 C -0.22 -12.25 10.74 84.04 0.90 -11.35 16 15 H 0.09 4.57 7.83 -2.91 -0.02 4.55 16 16 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 17 N -0.96 -58.69 11.75 21.65 0.25 -58.44 16 18 Si 0.98 45.43 29.56 68.60 2.03 47.46 16 19 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 20 H -0.30 -14.04 7.11 99.48 0.71 -13.34 16 21 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 22 C 0.17 7.95 6.39 83.31 0.53 8.49 16 23 C -0.09 -2.91 5.27 30.56 0.16 -2.74 16 24 C 0.11 2.61 5.55 86.42 0.48 3.09 16 25 C 0.34 8.94 7.76 85.13 0.66 9.60 16 26 O -0.49 -13.33 12.81 -85.78 -1.10 -14.42 16 27 N -0.53 -12.78 10.28 -296.06 -3.04 -15.82 16 28 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.11 0.36 8.07 -2.39 -0.02 0.34 16 31 H 0.19 0.75 8.06 -2.91 -0.02 0.73 16 32 H 0.17 1.80 7.48 -2.91 -0.02 1.78 16 33 H 0.09 2.28 6.99 -2.39 -0.02 2.27 16 34 H 0.09 1.92 8.14 -2.38 -0.02 1.91 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.08 2.34 8.10 -2.38 -0.02 2.32 16 37 H 0.04 1.49 8.06 -2.39 -0.02 1.47 16 38 H 0.06 1.93 7.53 -2.39 -0.02 1.91 16 39 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 40 H 0.02 1.16 7.48 -2.39 -0.02 1.15 16 41 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 42 H 0.07 2.48 7.95 -2.39 -0.02 2.46 16 43 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.10 1.98 4.65 -2.39 -0.01 1.97 16 45 H 0.10 1.88 7.60 -2.38 -0.02 1.86 16 46 H 0.42 8.07 9.06 -74.06 -0.67 7.40 16 Total: -1.00 -78.46 371.63 -0.19 -78.66 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.34 Total: 14.90 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 6.40 Total: 18.25 kcal Atomic # 7 Polarization: -118.26 SS G_CDS: -7.82 Total: -126.07 kcal Atomic # 8 Polarization: -32.06 SS G_CDS: -1.14 Total: -33.20 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -78.46 -0.19 -78.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001035804635.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.403 kcal (2) G-P(sol) polarization free energy of solvation -78.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds