Wall clock time and date at job start Tue Mar 31 2020 17:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37999 * 120.82298 * 2 1 4 4 C 1.39124 * 119.26623 * 180.27856 * 3 2 1 5 5 O 1.35497 * 119.52582 * 179.72097 * 4 3 2 6 6 N 1.32435 * 120.94854 * 359.69660 * 4 3 2 7 7 C 1.31641 * 121.79762 * 0.02782 * 6 4 3 8 8 C 1.39560 * 120.62698 * 359.97438 * 7 6 4 9 9 C 1.47621 * 120.49509 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99501 * 126.10277 * 9 8 7 11 11 N 1.34776 * 120.00283 * 306.10050 * 9 8 7 12 12 C 1.46598 * 119.68251 * 354.20658 * 11 9 8 13 13 C 1.53950 * 110.57444 * 227.82538 * 12 11 9 14 14 C 1.51489 * 107.35099 * 308.94172 * 13 12 11 15 15 H 1.09001 * 109.30167 * 306.31107 * 14 13 12 16 16 C 1.55366 * 107.78193 * 64.87690 * 14 13 12 17 17 H 1.08995 * 112.28103 * 50.84691 * 16 14 13 18 18 C 1.53737 * 100.22034 * 169.06956 * 16 14 13 19 19 C 1.55288 * 101.87605 * 320.88834 * 18 16 14 20 20 N 1.45467 * 117.34528 * 181.91174 * 14 13 12 21 21 C 1.36947 * 126.40448 * 30.62071 * 20 14 13 22 22 H 1.07998 * 119.99662 * 0.02562 * 21 20 14 23 23 C 1.38809 * 120.00341 * 180.02562 * 21 20 14 24 24 N 1.31618 * 119.99614 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00302 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47100 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47599 * 120.00001 * 25 23 21 28 28 H 1.48506 * 109.46798 * 240.00258 * 25 23 21 29 29 C 1.47719 * 119.68227 * 174.22638 * 11 9 8 30 30 H 1.09003 * 109.47145 * 275.16284 * 1 2 3 31 31 H 1.09001 * 109.47275 * 35.16284 * 1 2 3 32 32 H 1.08997 * 109.47100 * 155.16624 * 1 2 3 33 33 H 1.07999 * 120.36513 * 0.02562 * 3 2 1 34 34 H 0.96706 * 114.00170 * 269.98070 * 5 4 3 35 35 H 1.08001 * 119.68221 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.25789 * 348.11149 * 12 11 9 37 37 H 1.09001 * 109.25330 * 107.54443 * 12 11 9 38 38 H 1.09007 * 109.88070 * 68.40581 * 13 12 11 39 39 H 1.09003 * 109.88256 * 189.48666 * 13 12 11 40 40 H 1.09001 * 110.95818 * 79.04537 * 18 16 14 41 41 H 1.09000 * 110.95778 * 202.72877 * 18 16 14 42 42 H 1.09002 * 109.91893 * 141.85098 * 19 18 16 43 43 H 1.09008 * 109.91609 * 263.14946 * 19 18 16 44 44 H 0.97005 * 120.00069 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.07191 * 8.73268 * 29 11 9 46 46 H 1.08993 * 110.06967 * 247.15202 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3043 2.3077 -0.0117 6 7 4.2548 -0.0066 -0.0055 7 6 3.6204 -1.1601 0.0000 8 6 2.2255 -1.2043 0.0060 9 6 1.5171 -2.4994 0.0115 10 8 0.6847 -2.7333 0.8664 11 7 1.7930 -3.4225 -0.9309 12 6 2.7020 -3.0874 -2.0312 13 6 2.0950 -3.5084 -3.3818 14 6 1.6678 -4.9561 -3.2535 15 1 2.5125 -5.5517 -2.9072 16 6 0.5290 -5.0231 -2.1987 17 1 -0.2649 -4.3044 -2.4015 18 6 0.0440 -6.4663 -2.4123 19 6 0.1277 -6.6064 -3.9565 20 7 1.0986 -5.5918 -4.4316 21 6 1.4023 -5.3061 -5.7361 22 1 2.1300 -4.5420 -5.9661 23 6 0.7748 -5.9985 -6.7626 24 7 -0.1125 -6.9293 -6.4821 25 14 1.1896 -5.6092 -8.5418 26 1 2.2094 -4.5307 -8.5878 27 1 1.7253 -6.8262 -9.2029 28 1 -0.0367 -5.1607 -9.2492 29 6 1.1761 -4.7620 -0.8456 30 1 -0.3633 0.0925 1.0235 31 1 -0.3634 0.8401 -0.5918 32 1 -0.3633 -0.9326 -0.4316 33 1 1.6936 2.1314 0.0004 34 1 4.5038 2.6423 -0.8968 35 1 4.1848 -2.0808 0.0005 36 1 2.8792 -2.0119 -2.0362 37 1 3.6494 -3.6064 -1.8854 38 1 1.2300 -2.8854 -3.6097 39 1 2.8413 -3.4107 -4.1702 40 1 0.7073 -7.1774 -1.9198 41 1 -0.9819 -6.5882 -2.0648 42 1 0.4745 -7.6055 -4.2205 43 1 -0.8508 -6.4208 -4.3998 44 1 -0.5508 -7.4134 -7.1994 45 1 0.4201 -4.7764 -0.0606 46 1 1.9397 -5.5134 -0.6449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036818684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:38 Heat of formation + Delta-G solvation = -4.526418 kcal Electronic energy + Delta-G solvation = -29106.524807 eV Core-core repulsion = 25190.330844 eV Total energy + Delta-G solvation = -3916.193963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.26041 -39.93079 -38.38911 -37.26782 -35.51446 -34.15879 -32.82839 -31.64544 -31.12729 -29.47045 -28.39670 -27.92642 -25.28376 -24.49484 -23.29535 -22.64976 -22.29553 -20.30695 -20.01261 -19.28776 -18.69848 -17.73126 -17.25189 -16.37656 -16.27970 -16.02422 -15.18545 -14.94726 -14.79895 -14.54139 -14.19551 -13.97189 -13.87465 -13.39313 -13.36617 -13.08924 -12.96137 -12.90468 -12.51864 -12.46113 -12.34438 -12.03565 -11.70643 -11.53882 -11.46895 -10.89903 -10.85276 -10.77683 -10.33961 -10.14057 -10.07129 -9.92701 -9.89206 -9.68262 -9.61377 -9.53645 -9.18998 -8.66902 -8.62192 -6.88027 -5.75769 -3.09123 0.38325 0.82217 2.48339 2.84164 3.19248 3.36128 3.39766 3.41395 3.44096 4.18430 4.26948 4.35452 4.45148 4.66581 4.87118 4.92879 5.01291 5.10110 5.17328 5.27791 5.30243 5.36003 5.44428 5.47194 5.51565 5.54709 5.68940 5.74435 5.82729 5.92658 5.96094 6.07452 6.08660 6.12131 6.17305 6.29127 6.42315 6.55956 6.58029 6.76018 7.00813 7.08299 7.32439 7.49964 7.51467 7.57490 7.77134 8.03850 8.19906 9.14980 9.78680 10.46432 11.36749 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003244 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.739272 B = 8628.102881 C = 9654.342065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.021 3.979 3 C -0.192 4.192 4 C 0.327 3.673 5 O -0.482 6.482 6 N -0.507 5.507 7 C 0.164 3.836 8 C -0.189 4.189 9 C 0.565 3.435 10 O -0.534 6.534 11 N -0.598 5.598 12 C 0.109 3.891 13 C -0.128 4.128 14 C 0.168 3.832 15 H 0.021 0.979 16 C -0.124 4.124 17 H 0.079 0.921 18 C -0.136 4.136 19 C 0.177 3.823 20 N -0.595 5.595 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.008 4.008 24 N -0.920 5.920 25 Si 0.909 3.091 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.126 3.874 30 H 0.087 0.913 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.147 0.853 34 H 0.404 0.596 35 H 0.167 0.833 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.078 0.922 40 H 0.058 0.942 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.055 0.945 44 H 0.252 0.748 45 H 0.092 0.908 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.499 13.463 12.431 18.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.013 3.987 3 C -0.213 4.213 4 C 0.149 3.851 5 O -0.289 6.289 6 N -0.226 5.226 7 C 0.005 3.995 8 C -0.194 4.194 9 C 0.351 3.649 10 O -0.412 6.412 11 N -0.330 5.330 12 C -0.015 4.015 13 C -0.167 4.167 14 C 0.059 3.941 15 H 0.039 0.961 16 C -0.144 4.144 17 H 0.098 0.902 18 C -0.175 4.175 19 C 0.053 3.947 20 N -0.320 5.320 21 C -0.354 4.354 22 H 0.097 0.903 23 C -0.204 4.204 24 N -0.568 5.568 25 Si 0.740 3.260 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.004 3.996 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.165 0.835 34 H 0.262 0.738 35 H 0.184 0.816 36 H 0.095 0.905 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.110 0.890 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 4.887 13.276 13.220 19.362 hybrid contribution -0.481 0.287 -1.594 1.689 sum 4.406 13.562 11.626 18.399 Atomic orbital electron populations 1.20919 0.89035 1.03964 1.03756 1.20245 0.97302 0.90722 0.90449 1.21923 0.93743 0.99464 1.06156 1.19316 0.87054 0.85227 0.93467 1.84721 1.75979 1.34116 1.34116 1.67189 1.41860 0.98190 1.15334 1.22724 0.89947 0.95331 0.91498 1.20924 0.95498 0.94581 1.08394 1.17991 0.81991 0.83116 0.81764 1.90789 1.33177 1.79152 1.38039 1.48282 1.46713 1.13406 1.24628 1.21904 0.92319 1.00486 0.86752 1.21872 1.01437 0.98682 0.94731 1.20631 0.93558 0.91494 0.88369 0.96133 1.22631 0.99060 0.98422 0.94296 0.90213 1.22719 0.99989 0.94537 1.00248 1.21548 0.94330 0.92494 0.86329 1.44248 1.46760 1.40692 1.00296 1.19032 1.19167 1.16652 0.80580 0.90349 1.24791 0.99034 0.98642 0.97937 1.69948 1.30023 1.26328 1.30489 0.86088 0.77448 0.77460 0.85014 1.20543 1.21754 1.21810 1.21698 0.97508 0.81525 0.98852 0.89412 0.90553 0.90334 0.83547 0.73770 0.81619 0.90542 0.91268 0.91408 0.90397 0.92282 0.92026 0.94320 0.92720 0.93788 0.89007 0.90969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 9.36 36.00 0.34 -0.83 16 2 C 0.02 0.22 5.94 -103.96 -0.62 -0.39 16 3 C -0.19 -1.78 9.74 -39.34 -0.38 -2.17 16 4 C 0.33 3.39 7.74 -16.96 -0.13 3.26 16 5 O -0.48 -4.12 13.55 -18.18 -0.25 -4.37 16 6 N -0.51 -5.96 10.37 -12.97 -0.13 -6.09 16 7 C 0.16 1.81 9.02 -17.14 -0.15 1.66 16 8 C -0.19 -2.25 4.51 -104.82 -0.47 -2.73 16 9 C 0.56 7.84 6.13 -12.43 -0.08 7.76 16 10 O -0.53 -8.84 15.43 5.29 0.08 -8.76 16 11 N -0.60 -8.05 3.00 -173.69 -0.52 -8.57 16 12 C 0.11 1.35 5.32 -3.49 -0.02 1.33 16 13 C -0.13 -2.05 5.48 -27.00 -0.15 -2.20 16 14 C 0.17 3.17 2.55 -67.99 -0.17 3.00 16 15 H 0.02 0.41 7.94 -51.93 -0.41 0.00 16 16 C -0.12 -2.09 2.86 -89.37 -0.26 -2.34 16 17 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 18 C -0.14 -2.42 6.53 -25.14 -0.16 -2.58 16 19 C 0.18 4.13 5.45 -1.87 -0.01 4.12 16 20 N -0.60 -14.34 3.35 -163.03 -0.55 -14.89 16 21 C -0.23 -5.98 9.88 -15.06 -0.15 -6.13 16 22 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 23 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 24 N -0.92 -26.41 10.44 55.49 0.58 -25.83 16 25 Si 0.91 21.52 29.55 -169.99 -5.02 16.50 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 29 C 0.13 1.79 5.97 -3.76 -0.02 1.76 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.57 8.13 -51.93 -0.42 0.14 16 32 H 0.08 0.92 6.71 -51.93 -0.35 0.57 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.57 16 34 H 0.40 1.40 9.06 45.56 0.41 1.81 16 35 H 0.17 1.54 7.73 -52.49 -0.41 1.14 16 36 H 0.08 0.86 5.52 -51.93 -0.29 0.57 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 38 H 0.07 1.16 8.13 -51.93 -0.42 0.74 16 39 H 0.08 1.27 7.62 -51.93 -0.40 0.87 16 40 H 0.06 0.96 8.11 -51.93 -0.42 0.54 16 41 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.04 0.99 7.77 -51.93 -0.40 0.59 16 43 H 0.05 1.43 7.21 -51.92 -0.37 1.05 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 45 H 0.09 1.34 6.98 -51.93 -0.36 0.97 16 46 H 0.07 0.95 8.08 -51.93 -0.42 0.53 16 LS Contribution 364.15 15.07 5.49 5.49 Total: -1.00 -32.90 364.15 -8.75 -41.65 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -5.89 Total: 1.64 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -2.54 Total: 3.23 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.62 Total: -55.38 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -0.16 Total: -13.13 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.90 -8.75 -41.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.122 kcal (2) G-P(sol) polarization free energy of solvation -32.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds