Wall clock time and date at job start Tue Mar 31 2020 17:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37999 * 120.82298 * 2 1 4 4 C 1.39124 * 119.26623 * 180.27856 * 3 2 1 5 5 O 1.35497 * 119.52582 * 179.72097 * 4 3 2 6 6 N 1.32435 * 120.94854 * 359.69660 * 4 3 2 7 7 C 1.31641 * 121.79762 * 0.02782 * 6 4 3 8 8 C 1.39560 * 120.62698 * 359.97438 * 7 6 4 9 9 C 1.47621 * 120.49509 * 179.97438 * 8 7 6 10 10 O 1.21583 * 119.99501 * 126.10277 * 9 8 7 11 11 N 1.34776 * 120.00283 * 306.10050 * 9 8 7 12 12 C 1.46598 * 119.68251 * 354.20658 * 11 9 8 13 13 C 1.53950 * 110.57444 * 227.82538 * 12 11 9 14 14 C 1.51489 * 107.35099 * 308.94172 * 13 12 11 15 15 H 1.09001 * 109.30167 * 306.31107 * 14 13 12 16 16 C 1.55366 * 107.78193 * 64.87690 * 14 13 12 17 17 H 1.08995 * 112.28103 * 50.84691 * 16 14 13 18 18 C 1.53737 * 100.22034 * 169.06956 * 16 14 13 19 19 C 1.55288 * 101.87605 * 320.88834 * 18 16 14 20 20 N 1.45467 * 117.34528 * 181.91174 * 14 13 12 21 21 C 1.36947 * 126.40448 * 30.62071 * 20 14 13 22 22 H 1.07998 * 119.99662 * 0.02562 * 21 20 14 23 23 C 1.38809 * 120.00341 * 180.02562 * 21 20 14 24 24 N 1.31618 * 119.99614 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00302 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47100 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47599 * 120.00001 * 25 23 21 28 28 H 1.48506 * 109.46798 * 240.00258 * 25 23 21 29 29 C 1.47719 * 119.68227 * 174.22638 * 11 9 8 30 30 H 1.09003 * 109.47145 * 275.16284 * 1 2 3 31 31 H 1.09001 * 109.47275 * 35.16284 * 1 2 3 32 32 H 1.08997 * 109.47100 * 155.16624 * 1 2 3 33 33 H 1.07999 * 120.36513 * 0.02562 * 3 2 1 34 34 H 0.96706 * 114.00170 * 269.98070 * 5 4 3 35 35 H 1.08001 * 119.68221 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.25789 * 348.11149 * 12 11 9 37 37 H 1.09001 * 109.25330 * 107.54443 * 12 11 9 38 38 H 1.09007 * 109.88070 * 68.40581 * 13 12 11 39 39 H 1.09003 * 109.88256 * 189.48666 * 13 12 11 40 40 H 1.09001 * 110.95818 * 79.04537 * 18 16 14 41 41 H 1.09000 * 110.95778 * 202.72877 * 18 16 14 42 42 H 1.09002 * 109.91893 * 141.85098 * 19 18 16 43 43 H 1.09008 * 109.91609 * 263.14946 * 19 18 16 44 44 H 0.97005 * 120.00069 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.07191 * 8.73268 * 29 11 9 46 46 H 1.08993 * 110.06967 * 247.15202 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2141 1.1851 0.0000 4 6 3.6048 1.1473 -0.0059 5 8 4.3043 2.3077 -0.0117 6 7 4.2548 -0.0066 -0.0055 7 6 3.6204 -1.1601 0.0000 8 6 2.2255 -1.2043 0.0060 9 6 1.5171 -2.4994 0.0115 10 8 0.6847 -2.7333 0.8664 11 7 1.7930 -3.4225 -0.9309 12 6 2.7020 -3.0874 -2.0312 13 6 2.0950 -3.5084 -3.3818 14 6 1.6678 -4.9561 -3.2535 15 1 2.5125 -5.5517 -2.9072 16 6 0.5290 -5.0231 -2.1987 17 1 -0.2649 -4.3044 -2.4015 18 6 0.0440 -6.4663 -2.4123 19 6 0.1277 -6.6064 -3.9565 20 7 1.0986 -5.5918 -4.4316 21 6 1.4023 -5.3061 -5.7361 22 1 2.1300 -4.5420 -5.9661 23 6 0.7748 -5.9985 -6.7626 24 7 -0.1125 -6.9293 -6.4821 25 14 1.1896 -5.6092 -8.5418 26 1 2.2094 -4.5307 -8.5878 27 1 1.7253 -6.8262 -9.2029 28 1 -0.0367 -5.1607 -9.2492 29 6 1.1761 -4.7620 -0.8456 30 1 -0.3633 0.0925 1.0235 31 1 -0.3634 0.8401 -0.5918 32 1 -0.3633 -0.9326 -0.4316 33 1 1.6936 2.1314 0.0004 34 1 4.5038 2.6423 -0.8968 35 1 4.1848 -2.0808 0.0005 36 1 2.8792 -2.0119 -2.0362 37 1 3.6494 -3.6064 -1.8854 38 1 1.2300 -2.8854 -3.6097 39 1 2.8413 -3.4107 -4.1702 40 1 0.7073 -7.1774 -1.9198 41 1 -0.9819 -6.5882 -2.0648 42 1 0.4745 -7.6055 -4.2205 43 1 -0.8508 -6.4208 -4.3998 44 1 -0.5508 -7.4134 -7.1994 45 1 0.4201 -4.7764 -0.0606 46 1 1.9397 -5.5134 -0.6449 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036818684.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:37 Heat of formation + Delta-G solvation = -28.980180 kcal Electronic energy + Delta-G solvation = -29107.585201 eV Core-core repulsion = 25190.330844 eV Total energy + Delta-G solvation = -3917.254357 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.17275 -41.00799 -39.67789 -38.02750 -36.88079 -34.95366 -34.57443 -33.05738 -32.21601 -30.95260 -29.62156 -28.94100 -26.77675 -25.82951 -24.42784 -23.84022 -23.26409 -21.88800 -21.40022 -20.50772 -19.41006 -18.89041 -18.33506 -17.88073 -17.27228 -16.96659 -16.82926 -16.18059 -15.96694 -15.64318 -15.56368 -15.32759 -14.81304 -14.67719 -14.50881 -14.21063 -14.06109 -13.94530 -13.72336 -13.57875 -13.29405 -13.13747 -13.10154 -13.06780 -12.73313 -12.71442 -12.47533 -12.12315 -11.96113 -11.78182 -11.60797 -11.51877 -11.22724 -10.99291 -10.70867 -10.66400 -10.48439 -10.00885 -9.75099 -8.85843 -7.82395 -5.16545 -0.40957 0.05816 1.46493 1.47046 1.47194 1.57038 1.83488 2.43356 2.51361 2.64219 3.26837 3.36817 3.48922 3.52191 3.57222 3.80809 3.85764 3.95405 4.01241 4.17318 4.18140 4.23245 4.34573 4.40125 4.49210 4.59003 4.65398 4.65946 4.68158 4.71452 4.77805 4.82840 4.89917 4.97344 5.06409 5.09435 5.16153 5.21479 5.37901 5.44335 5.53928 5.55142 5.67907 5.78446 6.21986 6.25782 6.54321 6.78304 6.97882 7.10715 7.81077 8.49598 9.29627 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015494 B = 0.003244 C = 0.002900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1806.739272 B = 8628.102881 C = 9654.342065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.014 3.986 3 C -0.184 4.184 4 C 0.327 3.673 5 O -0.488 6.488 6 N -0.527 5.527 7 C 0.166 3.834 8 C -0.206 4.206 9 C 0.570 3.430 10 O -0.565 6.565 11 N -0.598 5.598 12 C 0.119 3.881 13 C -0.121 4.121 14 C 0.158 3.842 15 H 0.028 0.972 16 C -0.109 4.109 17 H 0.061 0.939 18 C -0.121 4.121 19 C 0.182 3.818 20 N -0.617 5.617 21 C -0.227 4.227 22 H 0.088 0.912 23 C -0.070 4.070 24 N -0.954 5.954 25 Si 0.972 3.028 26 H -0.262 1.262 27 H -0.296 1.296 28 H -0.297 1.297 29 C 0.134 3.866 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.054 0.946 33 H 0.174 0.826 34 H 0.425 0.575 35 H 0.181 0.819 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.004 0.996 43 H 0.015 0.985 44 H 0.244 0.756 45 H 0.091 0.909 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.171 15.712 13.578 21.664 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.006 3.994 3 C -0.205 4.205 4 C 0.150 3.850 5 O -0.299 6.299 6 N -0.247 5.247 7 C 0.008 3.992 8 C -0.212 4.212 9 C 0.358 3.642 10 O -0.444 6.444 11 N -0.330 5.330 12 C -0.004 4.004 13 C -0.160 4.160 14 C 0.051 3.949 15 H 0.045 0.955 16 C -0.129 4.129 17 H 0.080 0.920 18 C -0.160 4.160 19 C 0.057 3.943 20 N -0.341 5.341 21 C -0.356 4.356 22 H 0.106 0.894 23 C -0.263 4.263 24 N -0.604 5.604 25 Si 0.801 3.199 26 H -0.186 1.186 27 H -0.223 1.223 28 H -0.224 1.224 29 C 0.012 3.988 30 H 0.108 0.892 31 H 0.119 0.881 32 H 0.073 0.927 33 H 0.191 0.809 34 H 0.288 0.712 35 H 0.198 0.802 36 H 0.112 0.888 37 H 0.111 0.889 38 H 0.070 0.930 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.095 0.905 42 H 0.022 0.978 43 H 0.034 0.966 44 H 0.053 0.947 45 H 0.110 0.890 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 6.601 15.572 14.373 22.196 hybrid contribution -0.973 -0.328 -1.927 2.183 sum 5.628 15.244 12.446 20.469 Atomic orbital electron populations 1.20913 0.88634 1.03707 1.04149 1.20441 0.97748 0.90925 0.90246 1.22116 0.93375 0.99998 1.05011 1.19534 0.87610 0.85370 0.92507 1.84675 1.75762 1.33323 1.36131 1.67239 1.42390 0.98757 1.16307 1.22900 0.89577 0.95838 0.90887 1.20827 0.95940 0.93888 1.10529 1.18226 0.81369 0.83507 0.81096 1.90771 1.34632 1.79757 1.39270 1.48286 1.46712 1.13107 1.24875 1.21890 0.92391 1.01869 0.84202 1.21782 1.00919 0.96278 0.97068 1.20879 0.94113 0.92982 0.86915 0.95497 1.22455 0.97857 0.97159 0.95445 0.92029 1.22584 1.01700 0.95827 0.95891 1.21311 0.92132 0.90794 0.90039 1.44540 1.47075 1.41409 1.01098 1.19444 1.18363 1.15874 0.81925 0.89438 1.25604 0.99675 0.99184 1.01838 1.70173 1.31519 1.27727 1.30960 0.85087 0.77168 0.77313 0.80285 1.18635 1.22293 1.22422 1.21579 0.97977 0.82562 0.96638 0.89185 0.88115 0.92721 0.80866 0.71212 0.80183 0.88797 0.88887 0.93006 0.90581 0.90108 0.90498 0.97756 0.96649 0.94674 0.89048 0.89037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.09 9.36 71.24 0.67 -1.42 16 2 C 0.01 0.28 5.94 -19.44 -0.12 0.16 16 3 C -0.18 -2.87 9.74 22.43 0.22 -2.65 16 4 C 0.33 5.86 7.74 84.81 0.66 6.51 16 5 O -0.49 -6.86 13.55 -87.98 -1.19 -8.06 16 6 N -0.53 -11.04 10.37 -307.81 -3.19 -14.23 16 7 C 0.17 3.27 9.02 85.04 0.77 4.03 16 8 C -0.21 -4.51 4.51 -20.00 -0.09 -4.60 16 9 C 0.57 14.90 6.13 86.72 0.53 15.43 16 10 O -0.56 -18.14 15.43 -3.98 -0.06 -18.21 16 11 N -0.60 -14.86 3.00 -821.68 -2.46 -17.32 16 12 C 0.12 2.65 5.32 86.68 0.46 3.11 16 13 C -0.12 -3.72 5.48 30.42 0.17 -3.55 16 14 C 0.16 5.84 2.55 45.50 0.12 5.96 16 15 H 0.03 1.00 7.94 -2.39 -0.02 0.98 16 16 C -0.11 -3.58 2.86 -9.98 -0.03 -3.61 16 17 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 18 C -0.12 -4.26 6.53 31.63 0.21 -4.05 16 19 C 0.18 8.82 5.45 86.83 0.47 9.30 16 20 N -0.62 -30.21 3.35 -669.72 -2.25 -32.46 16 21 C -0.23 -12.16 9.88 84.03 0.83 -11.33 16 22 H 0.09 4.41 7.21 -2.91 -0.02 4.39 16 23 C -0.07 -3.94 5.49 84.86 0.47 -3.48 16 24 N -0.95 -57.14 10.44 21.65 0.23 -56.91 16 25 Si 0.97 45.02 29.55 68.60 2.03 47.05 16 26 H -0.26 -11.21 7.11 99.48 0.71 -10.51 16 27 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 28 H -0.30 -13.90 7.11 99.48 0.71 -13.19 16 29 C 0.13 3.54 5.97 85.90 0.51 4.05 16 30 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 31 H 0.10 1.24 8.13 -2.39 -0.02 1.22 16 32 H 0.05 1.24 6.71 -2.39 -0.02 1.22 16 33 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 34 H 0.43 1.61 9.06 -74.05 -0.67 0.94 16 35 H 0.18 2.83 7.73 -2.91 -0.02 2.80 16 36 H 0.09 1.83 5.52 -2.39 -0.01 1.82 16 37 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.05 1.74 8.13 -2.38 -0.02 1.72 16 39 H 0.08 2.36 7.62 -2.39 -0.02 2.34 16 40 H 0.08 2.50 8.11 -2.39 -0.02 2.48 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.45 16 42 H 0.00 0.23 7.77 -2.39 -0.02 0.21 16 43 H 0.02 0.84 7.21 -2.38 -0.02 0.83 16 44 H 0.24 14.30 8.31 -92.70 -0.77 13.53 16 45 H 0.09 2.50 6.98 -2.39 -0.02 2.48 16 46 H 0.09 2.12 8.08 -2.39 -0.02 2.10 16 Total: -1.00 -73.74 364.15 -0.72 -74.47 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: 0.34 Total: 11.80 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: 5.84 Total: 13.87 kcal Atomic # 7 Polarization: -113.25 SS G_CDS: -7.68 Total: -120.92 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: -1.25 Total: -26.26 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -73.74 -0.72 -74.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818684.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.487 kcal (2) G-P(sol) polarization free energy of solvation -73.743 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds