Wall clock time and date at job start Tue Mar 31 2020 17:44:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37994 * 120.82297 * 2 1 4 4 C 1.39117 * 119.26767 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52865 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95256 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.79669 * 359.72144 * 6 4 3 8 8 C 1.39567 * 120.62491 * 0.53944 * 7 6 4 9 9 C 1.47614 * 120.50122 * 179.74700 * 8 7 6 10 10 O 1.21573 * 120.00283 * 235.08830 * 9 8 7 11 11 N 1.34779 * 119.99456 * 55.08942 * 9 8 7 12 12 C 1.47139 * 121.01464 * 355.99376 * 11 9 8 13 13 C 1.53046 * 107.68454 * 122.53336 * 12 11 9 14 14 C 1.51146 * 111.10464 * 54.41593 * 13 12 11 15 15 H 1.08997 * 108.46255 * 184.61181 * 14 13 12 16 16 C 1.53994 * 113.16765 * 304.86262 * 14 13 12 17 17 H 1.08999 * 112.71713 * 283.34283 * 16 14 13 18 18 C 1.56019 * 100.38470 * 162.97503 * 16 14 13 19 19 C 1.54501 * 102.61833 * 323.13351 * 18 16 14 20 20 N 1.46471 * 112.67791 * 64.66510 * 14 13 12 21 21 C 1.36938 * 126.05363 * 29.82440 * 20 14 13 22 22 H 1.07997 * 120.00319 * 359.97438 * 21 20 14 23 23 C 1.38818 * 119.99523 * 179.97438 * 21 20 14 24 24 N 1.31620 * 120.00109 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47094 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46837 * 120.00278 * 25 23 21 28 28 H 1.48497 * 109.47002 * 239.99846 * 25 23 21 29 29 C 1.45321 * 120.74065 * 175.50046 * 11 9 8 30 30 H 1.09000 * 109.47449 * 274.42501 * 1 2 3 31 31 H 1.09003 * 109.47104 * 34.42583 * 1 2 3 32 32 H 1.09006 * 109.47152 * 154.42508 * 1 2 3 33 33 H 1.07998 * 120.36338 * 0.03667 * 3 2 1 34 34 H 0.96707 * 113.99674 * 89.99661 * 5 4 3 35 35 H 1.07997 * 119.68930 * 180.26772 * 7 6 4 36 36 H 1.09010 * 109.81674 * 2.98901 * 12 11 9 37 37 H 1.09001 * 109.86979 * 242.11539 * 12 11 9 38 38 H 1.08991 * 109.15282 * 293.99769 * 13 12 11 39 39 H 1.09001 * 109.15189 * 174.83311 * 13 12 11 40 40 H 1.09005 * 110.77806 * 81.41257 * 18 16 14 41 41 H 1.08994 * 110.78292 * 204.84630 * 18 16 14 42 42 H 1.09004 * 109.90013 * 263.44971 * 19 18 16 43 43 H 1.09005 * 110.05198 * 142.30289 * 19 18 16 44 44 H 0.96998 * 119.99869 * 179.97438 * 24 23 21 45 45 H 1.09002 * 108.30135 * 115.26153 * 29 11 9 46 46 H 1.08996 * 109.71809 * 356.12447 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6047 1.1473 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0033 8 6 2.2255 -1.2044 -0.0015 9 6 1.5171 -2.4994 -0.0016 10 8 0.6997 -2.7452 -0.8673 11 7 1.7764 -3.4094 0.9582 12 6 2.8227 -3.1720 1.9652 13 6 2.1665 -3.2534 3.3455 14 6 1.4276 -4.5602 3.5206 15 1 0.9108 -4.5386 4.4800 16 6 0.3873 -4.8208 2.4155 17 1 -0.5219 -4.2340 2.5464 18 6 0.1540 -6.3519 2.6042 19 6 1.5654 -6.8663 2.9655 20 7 2.3210 -5.7208 3.5042 21 6 3.6269 -5.7384 3.9159 22 1 4.0857 -4.8375 4.2955 23 6 4.3610 -6.9145 3.8452 24 7 3.8018 -8.0126 3.3830 25 14 6.1427 -6.9384 4.4062 26 1 6.5306 -5.5857 4.8804 27 1 6.2997 -7.9148 5.5141 28 1 7.0139 -7.3341 3.2705 29 6 1.0204 -4.6483 1.0310 30 1 -0.3634 0.0793 1.0246 31 1 -0.3633 0.8477 -0.5810 32 1 -0.3634 -0.9270 -0.4437 33 1 1.6935 2.1313 0.0006 34 1 4.5076 2.6448 0.8823 35 1 4.1848 -2.0808 0.0067 36 1 3.2573 -2.1829 1.8204 37 1 3.5988 -3.9326 1.8795 38 1 1.4639 -2.4276 3.4566 39 1 2.9365 -3.1723 4.1128 40 1 -0.5459 -6.5389 3.4186 41 1 -0.1980 -6.8065 1.6783 42 1 2.0599 -7.2505 2.0733 43 1 1.4956 -7.6518 3.7180 44 1 4.3149 -8.8343 3.3333 45 1 1.7021 -5.4771 0.8398 46 1 0.2368 -4.6460 0.2733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036818685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:43 Heat of formation + Delta-G solvation = -3.167410 kcal Electronic energy + Delta-G solvation = -29737.150158 eV Core-core repulsion = 25821.015127 eV Total energy + Delta-G solvation = -3916.135032 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.15538 -39.87154 -38.37178 -37.16621 -35.19692 -34.03179 -32.89882 -31.72751 -30.95342 -29.26034 -28.26047 -27.51609 -25.61540 -24.46315 -23.56963 -22.75088 -22.30856 -20.25862 -19.97716 -18.66474 -18.42856 -17.64541 -17.04606 -16.39245 -16.21287 -15.86742 -15.21924 -14.91570 -14.68445 -14.53787 -14.10053 -13.98653 -13.80228 -13.37317 -13.27841 -12.98678 -12.91169 -12.62470 -12.45161 -12.23228 -12.17289 -11.95340 -11.59407 -11.46167 -11.16687 -11.09104 -10.83280 -10.71375 -10.24185 -10.13066 -9.98623 -9.94565 -9.78289 -9.70684 -9.66388 -9.46506 -9.07004 -8.65564 -8.28195 -6.87503 -5.77196 -3.10244 0.50586 0.92351 2.63448 3.05264 3.34508 3.35448 3.41055 3.43951 3.50626 4.30793 4.41113 4.43691 4.48701 4.78127 4.97957 5.09891 5.15669 5.21714 5.30536 5.37903 5.39966 5.45265 5.50362 5.52659 5.55952 5.69286 5.77404 5.81922 5.95934 6.02904 6.09716 6.18338 6.21917 6.25627 6.29947 6.37333 6.48210 6.63985 6.70849 6.82449 6.86767 7.17381 7.51512 7.56460 7.59131 7.63655 7.77110 8.19170 8.23117 9.15183 9.77422 10.44659 11.34777 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.004095 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.888555 B = 6836.635645 C = 8246.613180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.020 3.980 3 C -0.193 4.193 4 C 0.325 3.675 5 O -0.482 6.482 6 N -0.506 5.506 7 C 0.163 3.837 8 C -0.185 4.185 9 C 0.565 3.435 10 O -0.542 6.542 11 N -0.586 5.586 12 C 0.106 3.894 13 C -0.128 4.128 14 C 0.170 3.830 15 H 0.019 0.981 16 C -0.115 4.115 17 H 0.077 0.923 18 C -0.142 4.142 19 C 0.176 3.824 20 N -0.594 5.594 21 C -0.226 4.226 22 H 0.079 0.921 23 C -0.005 4.005 24 N -0.918 5.918 25 Si 0.906 3.094 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 C 0.125 3.875 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.145 0.855 34 H 0.403 0.597 35 H 0.169 0.831 36 H 0.073 0.927 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.076 0.924 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.047 0.953 43 H 0.042 0.958 44 H 0.252 0.748 45 H 0.080 0.920 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.056 16.045 -3.446 17.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.012 3.988 3 C -0.215 4.215 4 C 0.147 3.853 5 O -0.290 6.290 6 N -0.225 5.225 7 C 0.005 3.995 8 C -0.190 4.190 9 C 0.351 3.649 10 O -0.421 6.421 11 N -0.316 5.316 12 C -0.016 4.016 13 C -0.167 4.167 14 C 0.062 3.938 15 H 0.036 0.964 16 C -0.136 4.136 17 H 0.095 0.905 18 C -0.181 4.181 19 C 0.051 3.949 20 N -0.320 5.320 21 C -0.355 4.355 22 H 0.097 0.903 23 C -0.201 4.201 24 N -0.565 5.565 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 C 0.002 3.998 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.163 0.837 34 H 0.261 0.739 35 H 0.186 0.814 36 H 0.091 0.909 37 H 0.114 0.886 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.062 0.938 45 H 0.098 0.902 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.411 15.760 -4.475 17.253 hybrid contribution 0.340 -0.011 0.959 1.018 sum -5.071 15.749 -3.516 16.915 Atomic orbital electron populations 1.21077 0.89303 1.05329 1.03284 1.20181 0.97211 0.90640 0.90794 1.21892 0.93743 0.99365 1.06455 1.19319 0.87060 0.85241 0.93664 1.84722 1.75993 1.34144 1.34093 1.67202 1.41883 0.98173 1.15220 1.22810 0.90108 0.95385 0.91226 1.20905 0.95468 0.94671 1.07937 1.17908 0.82119 0.82974 0.81855 1.90745 1.35673 1.78684 1.36977 1.47756 1.36151 1.19010 1.28692 1.22023 0.90424 1.01776 0.87353 1.21591 1.00285 0.98113 0.96703 1.20262 0.90550 0.88083 0.94869 0.96387 1.22735 0.98071 0.97546 0.95238 0.90453 1.23138 1.00361 0.94152 1.00422 1.21250 0.85843 0.89564 0.98228 1.44341 1.08893 1.04115 1.74664 1.18986 0.85384 0.95655 1.35432 0.90300 1.24766 0.98192 0.95783 1.01398 1.69959 1.35268 0.99998 1.51305 0.86143 0.84863 0.77401 0.77933 1.20507 1.21840 1.21786 1.21381 0.96062 0.85192 0.97128 0.90128 0.90523 0.88693 0.83698 0.73911 0.81371 0.90920 0.88561 0.92913 0.90506 0.92317 0.91931 0.93477 0.93931 0.93802 0.90201 0.89980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.34 9.75 36.00 0.35 -0.99 16 2 C 0.02 0.23 5.95 -103.96 -0.62 -0.39 16 3 C -0.19 -1.97 9.74 -39.34 -0.38 -2.36 16 4 C 0.33 3.77 7.74 -16.96 -0.13 3.63 16 5 O -0.48 -4.62 13.55 -18.20 -0.25 -4.86 16 6 N -0.51 -6.82 10.37 -12.97 -0.13 -6.96 16 7 C 0.16 2.16 8.61 -17.14 -0.15 2.01 16 8 C -0.18 -2.50 4.91 -104.82 -0.51 -3.02 16 9 C 0.56 8.85 6.58 -12.43 -0.08 8.77 16 10 O -0.54 -9.78 14.68 5.30 0.08 -9.70 16 11 N -0.59 -9.28 2.92 -175.15 -0.51 -9.79 16 12 C 0.11 1.65 5.58 -3.67 -0.02 1.63 16 13 C -0.13 -2.05 5.17 -27.64 -0.14 -2.20 16 14 C 0.17 3.16 2.89 -68.36 -0.20 2.96 16 15 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 16 C -0.12 -1.90 3.88 -88.38 -0.34 -2.25 16 17 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 18 C -0.14 -2.47 6.29 -24.33 -0.15 -2.62 16 19 C 0.18 3.94 4.64 -2.75 -0.01 3.93 16 20 N -0.59 -13.50 3.08 -164.49 -0.51 -14.01 16 21 C -0.23 -5.66 8.92 -15.06 -0.13 -5.79 16 22 H 0.08 1.89 6.66 -52.49 -0.35 1.55 16 23 C 0.00 -0.12 5.49 -17.43 -0.10 -0.22 16 24 N -0.92 -25.55 10.38 55.49 0.58 -24.97 16 25 Si 0.91 21.03 29.55 -169.99 -5.02 16.01 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 C 0.12 2.09 5.36 -4.57 -0.02 2.07 16 30 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.61 8.13 -51.93 -0.42 0.18 16 32 H 0.09 1.18 5.77 -51.93 -0.30 0.88 16 33 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 34 H 0.40 1.77 9.06 45.56 0.41 2.18 16 35 H 0.17 2.09 7.44 -52.49 -0.39 1.70 16 36 H 0.07 0.98 4.70 -51.92 -0.24 0.74 16 37 H 0.10 1.74 7.38 -51.93 -0.38 1.35 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.29 6.98 -51.93 -0.36 0.92 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.99 7.97 -51.93 -0.41 0.58 16 42 H 0.05 1.18 6.99 -51.93 -0.36 0.81 16 43 H 0.04 1.08 7.56 -51.93 -0.39 0.69 16 44 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 45 H 0.08 1.53 6.80 -51.93 -0.35 1.18 16 46 H 0.08 1.36 6.99 -51.93 -0.36 1.00 16 LS Contribution 356.81 15.07 5.38 5.38 Total: -1.00 -31.17 356.81 -8.64 -39.81 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.59 Total: 3.93 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -2.65 Total: 5.17 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.58 Total: -55.73 kcal Atomic # 8 Polarization: -14.40 SS G_CDS: -0.17 Total: -14.57 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.17 -8.64 -39.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.639 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds