Wall clock time and date at job start Tue Mar 31 2020 17:44:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37994 * 120.82297 * 2 1 4 4 C 1.39117 * 119.26767 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52865 * 179.97438 * 4 3 2 6 6 N 1.32438 * 120.95256 * 0.02562 * 4 3 2 7 7 C 1.31640 * 121.79669 * 359.72144 * 6 4 3 8 8 C 1.39567 * 120.62491 * 0.53944 * 7 6 4 9 9 C 1.47614 * 120.50122 * 179.74700 * 8 7 6 10 10 O 1.21573 * 120.00283 * 235.08830 * 9 8 7 11 11 N 1.34779 * 119.99456 * 55.08942 * 9 8 7 12 12 C 1.47139 * 121.01464 * 355.99376 * 11 9 8 13 13 C 1.53046 * 107.68454 * 122.53336 * 12 11 9 14 14 C 1.51146 * 111.10464 * 54.41593 * 13 12 11 15 15 H 1.08997 * 108.46255 * 184.61181 * 14 13 12 16 16 C 1.53994 * 113.16765 * 304.86262 * 14 13 12 17 17 H 1.08999 * 112.71713 * 283.34283 * 16 14 13 18 18 C 1.56019 * 100.38470 * 162.97503 * 16 14 13 19 19 C 1.54501 * 102.61833 * 323.13351 * 18 16 14 20 20 N 1.46471 * 112.67791 * 64.66510 * 14 13 12 21 21 C 1.36938 * 126.05363 * 29.82440 * 20 14 13 22 22 H 1.07997 * 120.00319 * 359.97438 * 21 20 14 23 23 C 1.38818 * 119.99523 * 179.97438 * 21 20 14 24 24 N 1.31620 * 120.00109 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99698 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47094 * 0.02562 * 25 23 21 27 27 H 1.48507 * 109.46837 * 120.00278 * 25 23 21 28 28 H 1.48497 * 109.47002 * 239.99846 * 25 23 21 29 29 C 1.45321 * 120.74065 * 175.50046 * 11 9 8 30 30 H 1.09000 * 109.47449 * 274.42501 * 1 2 3 31 31 H 1.09003 * 109.47104 * 34.42583 * 1 2 3 32 32 H 1.09006 * 109.47152 * 154.42508 * 1 2 3 33 33 H 1.07998 * 120.36338 * 0.03667 * 3 2 1 34 34 H 0.96707 * 113.99674 * 89.99661 * 5 4 3 35 35 H 1.07997 * 119.68930 * 180.26772 * 7 6 4 36 36 H 1.09010 * 109.81674 * 2.98901 * 12 11 9 37 37 H 1.09001 * 109.86979 * 242.11539 * 12 11 9 38 38 H 1.08991 * 109.15282 * 293.99769 * 13 12 11 39 39 H 1.09001 * 109.15189 * 174.83311 * 13 12 11 40 40 H 1.09005 * 110.77806 * 81.41257 * 18 16 14 41 41 H 1.08994 * 110.78292 * 204.84630 * 18 16 14 42 42 H 1.09004 * 109.90013 * 263.44971 * 19 18 16 43 43 H 1.09005 * 110.05198 * 142.30289 * 19 18 16 44 44 H 0.96998 * 119.99869 * 179.97438 * 24 23 21 45 45 H 1.09002 * 108.30135 * 115.26153 * 29 11 9 46 46 H 1.08996 * 109.71809 * 356.12447 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1850 0.0000 4 6 3.6047 1.1473 -0.0005 5 8 4.3043 2.3077 -0.0011 6 7 4.2548 -0.0066 -0.0016 7 6 3.6205 -1.1601 0.0033 8 6 2.2255 -1.2044 -0.0015 9 6 1.5171 -2.4994 -0.0016 10 8 0.6997 -2.7452 -0.8673 11 7 1.7764 -3.4094 0.9582 12 6 2.8227 -3.1720 1.9652 13 6 2.1665 -3.2534 3.3455 14 6 1.4276 -4.5602 3.5206 15 1 0.9108 -4.5386 4.4800 16 6 0.3873 -4.8208 2.4155 17 1 -0.5219 -4.2340 2.5464 18 6 0.1540 -6.3519 2.6042 19 6 1.5654 -6.8663 2.9655 20 7 2.3210 -5.7208 3.5042 21 6 3.6269 -5.7384 3.9159 22 1 4.0857 -4.8375 4.2955 23 6 4.3610 -6.9145 3.8452 24 7 3.8018 -8.0126 3.3830 25 14 6.1427 -6.9384 4.4062 26 1 6.5306 -5.5857 4.8804 27 1 6.2997 -7.9148 5.5141 28 1 7.0139 -7.3341 3.2705 29 6 1.0204 -4.6483 1.0310 30 1 -0.3634 0.0793 1.0246 31 1 -0.3633 0.8477 -0.5810 32 1 -0.3634 -0.9270 -0.4437 33 1 1.6935 2.1313 0.0006 34 1 4.5076 2.6448 0.8823 35 1 4.1848 -2.0808 0.0067 36 1 3.2573 -2.1829 1.8204 37 1 3.5988 -3.9326 1.8795 38 1 1.4639 -2.4276 3.4566 39 1 2.9365 -3.1723 4.1128 40 1 -0.5459 -6.5389 3.4186 41 1 -0.1980 -6.8065 1.6783 42 1 2.0599 -7.2505 2.0733 43 1 1.4956 -7.6518 3.7180 44 1 4.3149 -8.8343 3.3333 45 1 1.7021 -5.4771 0.8398 46 1 0.2368 -4.6460 0.2733 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036818685.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:42 Heat of formation + Delta-G solvation = -26.019392 kcal Electronic energy + Delta-G solvation = -29738.141095 eV Core-core repulsion = 25821.015127 eV Total energy + Delta-G solvation = -3917.125968 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.21034 -41.06632 -39.70124 -38.03049 -36.62330 -34.93226 -34.63114 -33.23533 -32.03865 -30.86731 -29.28427 -28.83100 -27.04848 -26.01825 -24.73669 -24.07622 -23.29371 -21.84479 -21.31833 -19.89095 -19.41230 -18.79097 -18.36841 -17.90059 -17.30853 -16.97264 -16.76064 -16.34710 -15.98963 -15.70169 -15.58026 -15.32452 -14.73515 -14.67523 -14.45064 -14.12113 -13.96029 -13.89171 -13.77480 -13.53361 -13.19265 -13.09758 -13.05339 -12.86357 -12.72123 -12.62699 -12.53384 -12.24411 -11.93680 -11.66369 -11.51391 -11.48362 -11.20075 -11.14406 -10.63887 -10.63842 -10.48303 -10.02031 -9.62812 -8.78268 -7.77744 -5.10257 -0.40869 0.04993 1.46551 1.48141 1.49603 1.57895 1.91063 2.42362 2.53586 2.62314 3.29741 3.42269 3.49568 3.57396 3.61175 3.81359 3.91703 3.93837 4.07168 4.18664 4.20415 4.24022 4.39128 4.44986 4.56957 4.58214 4.62520 4.66991 4.71098 4.77997 4.83849 4.86681 4.97672 5.02633 5.11503 5.22608 5.25476 5.27025 5.40120 5.40363 5.50756 5.60308 5.71914 5.83998 6.26460 6.35722 6.54030 6.77819 6.99519 7.17081 7.86710 8.53170 9.33814 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.013629 B = 0.004095 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.888555 B = 6836.635645 C = 8246.613180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.020 3.980 3 C -0.180 4.180 4 C 0.326 3.674 5 O -0.487 6.487 6 N -0.531 5.531 7 C 0.157 3.843 8 C -0.202 4.202 9 C 0.571 3.429 10 O -0.567 6.567 11 N -0.587 5.587 12 C 0.116 3.884 13 C -0.122 4.122 14 C 0.162 3.838 15 H 0.019 0.981 16 C -0.100 4.100 17 H 0.110 0.890 18 C -0.129 4.129 19 C 0.184 3.816 20 N -0.609 5.609 21 C -0.215 4.215 22 H 0.090 0.910 23 C -0.066 4.066 24 N -0.952 5.952 25 Si 0.963 3.037 26 H -0.261 1.261 27 H -0.300 1.300 28 H -0.300 1.300 29 C 0.131 3.869 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.069 0.931 33 H 0.180 0.820 34 H 0.425 0.575 35 H 0.165 0.835 36 H 0.096 0.904 37 H 0.064 0.936 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.078 0.922 42 H 0.010 0.990 43 H 0.003 0.997 44 H 0.241 0.759 45 H 0.047 0.953 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.205 19.906 -3.139 21.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.012 3.988 3 C -0.201 4.201 4 C 0.148 3.852 5 O -0.298 6.298 6 N -0.250 5.250 7 C 0.000 4.000 8 C -0.207 4.207 9 C 0.359 3.641 10 O -0.448 6.448 11 N -0.317 5.317 12 C -0.006 4.006 13 C -0.161 4.161 14 C 0.056 3.944 15 H 0.037 0.963 16 C -0.120 4.120 17 H 0.128 0.872 18 C -0.168 4.168 19 C 0.059 3.941 20 N -0.334 5.334 21 C -0.344 4.344 22 H 0.108 0.892 23 C -0.259 4.259 24 N -0.602 5.602 25 Si 0.793 3.207 26 H -0.185 1.185 27 H -0.228 1.228 28 H -0.228 1.228 29 C 0.008 3.992 30 H 0.116 0.884 31 H 0.119 0.881 32 H 0.087 0.913 33 H 0.197 0.803 34 H 0.288 0.712 35 H 0.182 0.818 36 H 0.114 0.886 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.089 0.911 40 H 0.093 0.907 41 H 0.097 0.903 42 H 0.029 0.971 43 H 0.021 0.979 44 H 0.051 0.949 45 H 0.065 0.935 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.563 19.686 -4.137 21.159 hybrid contribution 0.691 -1.077 0.840 1.531 sum -5.872 18.608 -3.297 19.789 Atomic orbital electron populations 1.21097 0.88021 1.05019 1.04533 1.20449 0.98143 0.90298 0.89920 1.22144 0.93079 1.00148 1.04703 1.19573 0.87851 0.85175 0.92590 1.84680 1.75820 1.33139 1.36178 1.67201 1.42645 0.98809 1.16371 1.22727 0.90069 0.95527 0.91723 1.20757 0.95500 0.94192 1.10291 1.18177 0.81574 0.83449 0.80884 1.90730 1.36986 1.79335 1.37752 1.47734 1.36115 1.18784 1.29037 1.21881 0.89585 1.01990 0.87141 1.21537 1.00540 0.97493 0.96566 1.20502 0.90577 0.87799 0.95567 0.96341 1.22708 0.98456 0.96889 0.93946 0.87226 1.23010 0.97134 0.94929 1.01701 1.20971 0.88623 0.89097 0.95390 1.44566 1.08816 1.05837 1.74186 1.19359 0.86412 0.95518 1.33125 0.89242 1.25473 1.01589 0.95919 1.02900 1.70176 1.36172 1.00239 1.53633 0.85224 0.81004 0.77776 0.76709 1.18539 1.22817 1.22765 1.21193 0.95538 0.84834 0.97594 0.88432 0.88068 0.91260 0.80308 0.71238 0.81778 0.88566 0.91745 0.89931 0.91078 0.90719 0.90331 0.97127 0.97858 0.94935 0.93454 0.89496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 9.75 71.23 0.69 -1.46 16 2 C 0.02 0.40 5.95 -19.43 -0.12 0.29 16 3 C -0.18 -2.96 9.74 22.42 0.22 -2.74 16 4 C 0.33 6.56 7.74 84.81 0.66 7.22 16 5 O -0.49 -7.71 13.55 -88.03 -1.19 -8.90 16 6 N -0.53 -13.37 10.37 -307.80 -3.19 -16.56 16 7 C 0.16 4.00 8.61 85.04 0.73 4.73 16 8 C -0.20 -5.13 4.91 -19.99 -0.10 -5.22 16 9 C 0.57 17.28 6.58 86.72 0.57 17.85 16 10 O -0.57 -20.07 14.68 -3.94 -0.06 -20.13 16 11 N -0.59 -18.12 2.92 -826.30 -2.41 -20.53 16 12 C 0.12 3.50 5.58 86.27 0.48 3.98 16 13 C -0.12 -3.68 5.17 30.00 0.16 -3.53 16 14 C 0.16 5.80 2.89 44.73 0.13 5.93 16 15 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 16 C -0.10 -3.11 3.88 -9.34 -0.04 -3.15 16 17 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 18 C -0.13 -4.41 6.29 32.15 0.20 -4.21 16 19 C 0.18 8.62 4.64 86.71 0.40 9.02 16 20 N -0.61 -28.11 3.08 -674.32 -2.08 -30.19 16 21 C -0.22 -10.92 8.92 84.03 0.75 -10.17 16 22 H 0.09 4.26 6.66 -2.91 -0.02 4.24 16 23 C -0.07 -3.59 5.49 84.86 0.47 -3.12 16 24 N -0.95 -55.82 10.38 21.65 0.22 -55.59 16 25 Si 0.96 44.39 29.55 68.60 2.03 46.41 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.39 16 27 H -0.30 -14.18 7.11 99.48 0.71 -13.47 16 28 H -0.30 -14.14 7.11 99.48 0.71 -13.44 16 29 C 0.13 4.36 5.36 86.67 0.46 4.82 16 30 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.10 1.16 8.13 -2.39 -0.02 1.14 16 32 H 0.07 1.57 5.77 -2.38 -0.01 1.55 16 33 H 0.18 1.69 8.06 -2.91 -0.02 1.66 16 34 H 0.43 2.23 9.06 -74.05 -0.67 1.56 16 35 H 0.17 4.11 7.44 -2.91 -0.02 4.08 16 36 H 0.10 2.46 4.70 -2.38 -0.01 2.45 16 37 H 0.06 2.37 7.38 -2.39 -0.02 2.35 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.07 2.24 6.98 -2.39 -0.02 2.22 16 40 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 41 H 0.08 2.44 7.97 -2.39 -0.02 2.42 16 42 H 0.01 0.56 6.99 -2.39 -0.02 0.55 16 43 H 0.00 0.17 7.56 -2.38 -0.02 0.15 16 44 H 0.24 14.02 8.31 -92.71 -0.77 13.24 16 45 H 0.05 1.88 6.80 -2.39 -0.02 1.87 16 46 H 0.09 2.81 6.99 -2.39 -0.02 2.80 16 Total: -1.00 -70.51 356.81 -0.65 -71.17 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: 0.35 Total: 14.10 kcal Atomic # 6 Polarization: 14.55 SS G_CDS: 5.67 Total: 20.22 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -7.46 Total: -122.87 kcal Atomic # 8 Polarization: -27.78 SS G_CDS: -1.25 Total: -29.03 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -70.51 -0.65 -71.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818685.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.146 kcal (2) G-P(sol) polarization free energy of solvation -70.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds