Wall clock time and date at job start Tue Mar 31 2020 17:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38001 * 120.81757 * 2 1 4 4 C 1.39127 * 119.26039 * 180.27742 * 3 2 1 5 5 O 1.35497 * 119.52120 * 179.72499 * 4 3 2 6 6 N 1.32443 * 120.94808 * 359.69809 * 4 3 2 7 7 C 1.31630 * 121.80321 * 0.02562 * 6 4 3 8 8 C 1.39564 * 120.62442 * 0.02562 * 7 6 4 9 9 C 1.47619 * 120.49897 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99957 * 234.33451 * 9 8 7 11 11 N 1.34773 * 119.99743 * 54.33961 * 9 8 7 12 12 C 1.46590 * 119.68496 * 355.95613 * 11 9 8 13 13 C 1.53949 * 110.57606 * 132.15768 * 12 11 9 14 14 C 1.51232 * 107.40702 * 50.83802 * 13 12 11 15 15 H 1.08998 * 108.31397 * 53.43083 * 14 13 12 16 16 C 1.55053 * 108.10405 * 295.39992 * 14 13 12 17 17 H 1.09009 * 112.07795 * 308.94910 * 16 14 13 18 18 C 1.53747 * 100.33982 * 190.74652 * 16 14 13 19 19 C 1.55288 * 101.84267 * 38.91705 * 18 16 14 20 20 N 1.45470 * 117.53440 * 177.79466 * 14 13 12 21 21 C 1.36935 * 126.40771 * 329.91767 * 20 14 13 22 22 H 1.08000 * 119.99940 * 359.70749 * 21 20 14 23 23 C 1.38818 * 119.99908 * 179.71686 * 21 20 14 24 24 N 1.31622 * 119.99944 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99759 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47076 * 59.99624 * 25 23 21 27 27 H 1.48498 * 109.47139 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47194 * 299.99533 * 25 23 21 29 29 C 1.47725 * 119.67898 * 175.94082 * 11 9 8 30 30 H 1.09000 * 109.47607 * 264.69942 * 1 2 3 31 31 H 1.09005 * 109.47350 * 24.70188 * 1 2 3 32 32 H 1.09007 * 109.47598 * 144.70025 * 1 2 3 33 33 H 1.07993 * 120.36863 * 359.97438 * 3 2 1 34 34 H 0.96698 * 114.00034 * 269.96831 * 5 4 3 35 35 H 1.07994 * 119.68806 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.25787 * 252.43686 * 12 11 9 37 37 H 1.08995 * 109.25757 * 11.91094 * 12 11 9 38 38 H 1.08998 * 109.89040 * 170.51470 * 13 12 11 39 39 H 1.09003 * 109.88208 * 291.52203 * 13 12 11 40 40 H 1.09004 * 110.94682 * 280.78199 * 18 16 14 41 41 H 1.08997 * 110.95998 * 157.06477 * 18 16 14 42 42 H 1.09001 * 109.91728 * 218.17715 * 19 18 16 43 43 H 1.09000 * 109.91371 * 96.87719 * 19 18 16 44 44 H 0.97001 * 119.99733 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.06801 * 112.86339 * 29 11 9 46 46 H 1.08999 * 110.15581 * 351.33577 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1474 -0.0059 5 8 4.3041 2.3078 -0.0116 6 7 4.2547 -0.0066 -0.0055 7 6 3.6205 -1.1600 0.0000 8 6 2.2256 -1.2043 0.0050 9 6 1.5171 -2.4994 0.0105 10 8 0.6838 -2.7401 -0.8414 11 7 1.7941 -3.4149 0.9600 12 6 2.8617 -3.1544 1.9302 13 6 2.3762 -3.4488 3.3611 14 6 1.7653 -4.8323 3.3559 15 1 2.4937 -5.5268 2.9375 16 6 0.5123 -4.8022 2.4431 17 1 -0.1619 -3.9849 2.6994 18 6 -0.1095 -6.1667 2.7829 19 6 0.1428 -6.2598 4.3123 20 7 1.2751 -5.3557 4.6216 21 6 1.7647 -5.0629 5.8664 22 1 2.5991 -4.3855 5.9729 23 6 1.1888 -5.6370 6.9915 24 7 0.1717 -6.4623 6.8617 25 14 1.8572 -5.2381 8.6896 26 1 1.7458 -3.7778 8.9349 27 1 1.0740 -5.9730 9.7151 28 1 3.2829 -5.6460 8.7688 29 6 1.0185 -4.6710 1.0133 30 1 -0.3634 -0.0949 1.0232 31 1 -0.3634 0.9337 -0.4295 32 1 -0.3634 -0.8387 -0.5939 33 1 1.6935 2.1314 -0.0004 34 1 4.5038 2.6424 -0.8966 35 1 4.1849 -2.0807 0.0006 36 1 3.7171 -3.7907 1.7028 37 1 3.1629 -2.1092 1.8613 38 1 3.2180 -3.4151 4.0527 39 1 1.6251 -2.7160 3.6559 40 1 0.4021 -6.9707 2.2537 41 1 -1.1769 -6.1744 2.5626 42 1 0.3999 -7.2835 4.5846 43 1 -0.7466 -5.9404 4.8555 44 1 -0.2310 -6.8631 7.6479 45 1 1.6591 -5.5170 0.7642 46 1 0.1775 -4.6228 0.3217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036818686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:46 Heat of formation + Delta-G solvation = -2.410675 kcal Electronic energy + Delta-G solvation = -29143.549151 eV Core-core repulsion = 25227.446934 eV Total energy + Delta-G solvation = -3916.102217 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.27890 -39.93025 -38.40451 -37.27053 -35.54235 -34.13185 -32.83466 -31.65014 -31.13573 -29.48038 -28.38569 -27.89631 -25.31647 -24.47076 -23.28660 -22.71640 -22.24125 -20.29592 -20.01583 -19.26811 -18.71479 -17.77536 -17.20371 -16.37701 -16.24383 -16.01137 -15.14124 -15.03954 -14.80977 -14.56213 -14.16150 -14.01494 -13.87408 -13.35530 -13.31772 -13.01860 -12.98349 -12.92423 -12.52819 -12.45474 -12.32707 -12.02108 -11.70018 -11.51987 -11.46281 -10.87685 -10.82450 -10.75074 -10.31300 -10.17648 -10.07190 -9.91248 -9.86327 -9.67528 -9.62684 -9.56112 -9.12789 -8.64865 -8.62537 -6.87072 -5.74334 -3.07731 0.38459 0.83185 2.48633 2.88540 3.10158 3.38451 3.43060 3.44084 3.44745 4.18260 4.27298 4.35925 4.46699 4.68643 4.87655 4.94433 5.01507 5.10413 5.18117 5.27784 5.31051 5.39372 5.44989 5.47761 5.52657 5.54916 5.70254 5.74790 5.83084 5.95451 5.98284 6.08476 6.10804 6.13177 6.19230 6.29779 6.42296 6.56119 6.59134 6.76958 7.01073 7.08966 7.32301 7.50323 7.52080 7.58171 7.77902 8.03275 8.21404 9.16514 9.80017 10.47694 11.38065 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.003326 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.069040 B = 8415.245158 C = 9517.813192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.024 3.976 3 C -0.192 4.192 4 C 0.328 3.672 5 O -0.481 6.481 6 N -0.507 5.507 7 C 0.162 3.838 8 C -0.190 4.190 9 C 0.566 3.434 10 O -0.537 6.537 11 N -0.596 5.596 12 C 0.103 3.897 13 C -0.129 4.129 14 C 0.169 3.831 15 H 0.019 0.981 16 C -0.124 4.124 17 H 0.079 0.921 18 C -0.135 4.135 19 C 0.177 3.823 20 N -0.594 5.594 21 C -0.228 4.228 22 H 0.078 0.922 23 C -0.007 4.007 24 N -0.921 5.921 25 Si 0.910 3.090 26 H -0.285 1.285 27 H -0.290 1.290 28 H -0.285 1.285 29 C 0.127 3.873 30 H 0.083 0.917 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.167 0.833 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.054 0.946 44 H 0.253 0.747 45 H 0.072 0.928 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.419 12.293 -16.466 20.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.016 3.984 3 C -0.213 4.213 4 C 0.150 3.850 5 O -0.288 6.288 6 N -0.226 5.226 7 C 0.003 3.997 8 C -0.195 4.195 9 C 0.353 3.647 10 O -0.415 6.415 11 N -0.327 5.327 12 C -0.020 4.020 13 C -0.169 4.169 14 C 0.060 3.940 15 H 0.036 0.964 16 C -0.145 4.145 17 H 0.097 0.903 18 C -0.174 4.174 19 C 0.053 3.947 20 N -0.318 5.318 21 C -0.356 4.356 22 H 0.096 0.904 23 C -0.203 4.203 24 N -0.569 5.569 25 Si 0.740 3.260 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 C 0.005 3.995 30 H 0.101 0.899 31 H 0.094 0.906 32 H 0.114 0.886 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.184 0.816 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.818 12.103 -16.043 20.455 hybrid contribution -0.306 0.359 0.672 0.821 sum 3.511 12.462 -15.371 20.097 Atomic orbital electron populations 1.21090 0.89157 1.04777 1.04036 1.20222 0.97329 0.90624 0.90273 1.21945 0.93749 0.99446 1.06185 1.19324 0.87062 0.85210 0.93391 1.84729 1.75990 1.34111 1.33986 1.67185 1.41875 0.98182 1.15393 1.22728 0.89989 0.95377 0.91579 1.20872 0.95487 0.94664 1.08508 1.17975 0.82189 0.83002 0.81576 1.90755 1.34432 1.78848 1.37496 1.48283 1.36002 1.18717 1.29715 1.22029 0.89140 1.01418 0.89387 1.21841 1.01739 0.99406 0.93868 1.20492 0.92979 0.92443 0.88071 0.96351 1.22582 0.99102 0.99071 0.93696 0.90255 1.22718 0.99504 0.95099 1.00113 1.21533 0.91320 0.94224 0.87621 1.44194 1.36238 1.51107 1.00293 1.18947 1.11979 1.22964 0.81701 0.90436 1.24789 0.98253 0.99459 0.97815 1.69927 1.25027 1.33722 1.28182 0.86236 0.78090 0.77679 0.83976 1.21209 1.21603 1.21152 1.21688 0.95621 0.84125 0.98020 0.89862 0.90605 0.88562 0.83551 0.73890 0.81565 0.91077 0.90198 0.90343 0.91477 0.92251 0.92005 0.94294 0.92745 0.93682 0.90955 0.89040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.32 9.59 36.00 0.35 -0.97 16 2 C 0.02 0.26 5.94 -103.96 -0.62 -0.36 16 3 C -0.19 -1.83 9.71 -39.34 -0.38 -2.21 16 4 C 0.33 3.47 7.74 -16.96 -0.13 3.34 16 5 O -0.48 -4.20 13.55 -18.18 -0.25 -4.44 16 6 N -0.51 -6.04 10.37 -12.97 -0.13 -6.18 16 7 C 0.16 1.81 8.65 -17.14 -0.15 1.66 16 8 C -0.19 -2.30 4.79 -104.82 -0.50 -2.80 16 9 C 0.57 7.87 6.65 -12.43 -0.08 7.79 16 10 O -0.54 -8.73 14.62 5.29 0.08 -8.65 16 11 N -0.60 -8.15 3.00 -173.69 -0.52 -8.67 16 12 C 0.10 1.33 5.27 -3.50 -0.02 1.31 16 13 C -0.13 -2.13 5.48 -27.13 -0.15 -2.28 16 14 C 0.17 3.24 2.55 -68.29 -0.17 3.06 16 15 H 0.02 0.37 7.89 -51.93 -0.41 -0.04 16 16 C -0.12 -2.11 2.85 -89.53 -0.26 -2.36 16 17 H 0.08 1.46 8.14 -51.92 -0.42 1.03 16 18 C -0.14 -2.41 6.54 -25.13 -0.16 -2.58 16 19 C 0.18 4.16 5.45 -1.92 -0.01 4.15 16 20 N -0.59 -14.46 3.35 -163.45 -0.55 -15.01 16 21 C -0.23 -6.10 9.88 -15.06 -0.15 -6.25 16 22 H 0.08 1.99 7.21 -52.49 -0.38 1.61 16 23 C -0.01 -0.19 5.49 -17.43 -0.10 -0.28 16 24 N -0.92 -26.59 10.44 55.49 0.58 -26.01 16 25 Si 0.91 21.75 29.55 -169.99 -5.02 16.73 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 29 C 0.13 1.82 5.94 -3.76 -0.02 1.79 16 30 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 32 H 0.10 1.13 6.07 -51.92 -0.32 0.81 16 33 H 0.15 1.03 8.06 -52.49 -0.42 0.60 16 34 H 0.40 1.36 9.06 45.56 0.41 1.77 16 35 H 0.17 1.56 7.37 -52.49 -0.39 1.17 16 36 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.08 0.95 4.87 -51.93 -0.25 0.70 16 38 H 0.08 1.32 7.62 -51.93 -0.40 0.92 16 39 H 0.07 1.18 8.13 -51.93 -0.42 0.76 16 40 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.58 16 42 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 43 H 0.05 1.43 7.21 -51.93 -0.37 1.05 16 44 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 45 H 0.07 0.97 8.07 -51.93 -0.42 0.55 16 46 H 0.09 1.32 7.03 -51.93 -0.36 0.96 16 LS Contribution 362.16 15.07 5.46 5.46 Total: -1.00 -32.97 362.16 -8.72 -41.68 By element: Atomic # 1 Polarization: 7.88 SS G_CDS: -5.80 Total: 2.08 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -2.56 Total: 3.01 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.62 Total: -55.87 kcal Atomic # 8 Polarization: -12.93 SS G_CDS: -0.17 Total: -13.10 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.97 -8.72 -41.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.272 kcal (2) G-P(sol) polarization free energy of solvation -32.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds