Wall clock time and date at job start Tue Mar 31 2020 17:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38001 * 120.81757 * 2 1 4 4 C 1.39127 * 119.26039 * 180.27742 * 3 2 1 5 5 O 1.35497 * 119.52120 * 179.72499 * 4 3 2 6 6 N 1.32443 * 120.94808 * 359.69809 * 4 3 2 7 7 C 1.31630 * 121.80321 * 0.02562 * 6 4 3 8 8 C 1.39564 * 120.62442 * 0.02562 * 7 6 4 9 9 C 1.47619 * 120.49897 * 179.97438 * 8 7 6 10 10 O 1.21582 * 119.99957 * 234.33451 * 9 8 7 11 11 N 1.34773 * 119.99743 * 54.33961 * 9 8 7 12 12 C 1.46590 * 119.68496 * 355.95613 * 11 9 8 13 13 C 1.53949 * 110.57606 * 132.15768 * 12 11 9 14 14 C 1.51232 * 107.40702 * 50.83802 * 13 12 11 15 15 H 1.08998 * 108.31397 * 53.43083 * 14 13 12 16 16 C 1.55053 * 108.10405 * 295.39992 * 14 13 12 17 17 H 1.09009 * 112.07795 * 308.94910 * 16 14 13 18 18 C 1.53747 * 100.33982 * 190.74652 * 16 14 13 19 19 C 1.55288 * 101.84267 * 38.91705 * 18 16 14 20 20 N 1.45470 * 117.53440 * 177.79466 * 14 13 12 21 21 C 1.36935 * 126.40771 * 329.91767 * 20 14 13 22 22 H 1.08000 * 119.99940 * 359.70749 * 21 20 14 23 23 C 1.38818 * 119.99908 * 179.71686 * 21 20 14 24 24 N 1.31622 * 119.99944 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99759 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47076 * 59.99624 * 25 23 21 27 27 H 1.48498 * 109.47139 * 179.97438 * 25 23 21 28 28 H 1.48498 * 109.47194 * 299.99533 * 25 23 21 29 29 C 1.47725 * 119.67898 * 175.94082 * 11 9 8 30 30 H 1.09000 * 109.47607 * 264.69942 * 1 2 3 31 31 H 1.09005 * 109.47350 * 24.70188 * 1 2 3 32 32 H 1.09007 * 109.47598 * 144.70025 * 1 2 3 33 33 H 1.07993 * 120.36863 * 359.97438 * 3 2 1 34 34 H 0.96698 * 114.00034 * 269.96831 * 5 4 3 35 35 H 1.07994 * 119.68806 * 180.02562 * 7 6 4 36 36 H 1.09004 * 109.25787 * 252.43686 * 12 11 9 37 37 H 1.08995 * 109.25757 * 11.91094 * 12 11 9 38 38 H 1.08998 * 109.89040 * 170.51470 * 13 12 11 39 39 H 1.09003 * 109.88208 * 291.52203 * 13 12 11 40 40 H 1.09004 * 110.94682 * 280.78199 * 18 16 14 41 41 H 1.08997 * 110.95998 * 157.06477 * 18 16 14 42 42 H 1.09001 * 109.91728 * 218.17715 * 19 18 16 43 43 H 1.09000 * 109.91371 * 96.87719 * 19 18 16 44 44 H 0.97001 * 119.99733 * 180.02562 * 24 23 21 45 45 H 1.08997 * 110.06801 * 112.86339 * 29 11 9 46 46 H 1.08999 * 110.15581 * 351.33577 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1852 0.0000 4 6 3.6047 1.1474 -0.0059 5 8 4.3041 2.3078 -0.0116 6 7 4.2547 -0.0066 -0.0055 7 6 3.6205 -1.1600 0.0000 8 6 2.2256 -1.2043 0.0050 9 6 1.5171 -2.4994 0.0105 10 8 0.6838 -2.7401 -0.8414 11 7 1.7941 -3.4149 0.9600 12 6 2.8617 -3.1544 1.9302 13 6 2.3762 -3.4488 3.3611 14 6 1.7653 -4.8323 3.3559 15 1 2.4937 -5.5268 2.9375 16 6 0.5123 -4.8022 2.4431 17 1 -0.1619 -3.9849 2.6994 18 6 -0.1095 -6.1667 2.7829 19 6 0.1428 -6.2598 4.3123 20 7 1.2751 -5.3557 4.6216 21 6 1.7647 -5.0629 5.8664 22 1 2.5991 -4.3855 5.9729 23 6 1.1888 -5.6370 6.9915 24 7 0.1717 -6.4623 6.8617 25 14 1.8572 -5.2381 8.6896 26 1 1.7458 -3.7778 8.9349 27 1 1.0740 -5.9730 9.7151 28 1 3.2829 -5.6460 8.7688 29 6 1.0185 -4.6710 1.0133 30 1 -0.3634 -0.0949 1.0232 31 1 -0.3634 0.9337 -0.4295 32 1 -0.3634 -0.8387 -0.5939 33 1 1.6935 2.1314 -0.0004 34 1 4.5038 2.6424 -0.8966 35 1 4.1849 -2.0807 0.0006 36 1 3.7171 -3.7907 1.7028 37 1 3.1629 -2.1092 1.8613 38 1 3.2180 -3.4151 4.0527 39 1 1.6251 -2.7160 3.6559 40 1 0.4021 -6.9707 2.2537 41 1 -1.1769 -6.1744 2.5626 42 1 0.3999 -7.2835 4.5846 43 1 -0.7466 -5.9404 4.8555 44 1 -0.2310 -6.8631 7.6479 45 1 1.6591 -5.5170 0.7642 46 1 0.1775 -4.6228 0.3217 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036818686.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:46 Heat of formation + Delta-G solvation = -26.900321 kcal Electronic energy + Delta-G solvation = -29144.611102 eV Core-core repulsion = 25227.446934 eV Total energy + Delta-G solvation = -3917.164168 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20626 -41.01942 -39.69842 -38.04049 -36.91561 -34.94611 -34.58820 -33.08493 -32.23823 -30.98678 -29.61636 -28.92781 -26.80201 -25.84156 -24.43767 -23.89617 -23.25174 -21.89764 -21.40192 -20.50613 -19.44695 -18.91841 -18.35305 -17.85558 -17.27113 -16.96928 -16.79945 -16.15720 -16.06982 -15.71763 -15.61048 -15.26774 -14.93542 -14.68987 -14.41728 -14.22564 -13.99565 -13.96419 -13.71279 -13.61878 -13.29917 -13.17647 -13.11726 -13.03113 -12.72580 -12.64708 -12.49418 -12.14407 -12.04056 -11.78111 -11.61117 -11.51054 -11.20834 -11.01617 -10.69389 -10.66246 -10.51908 -9.97083 -9.76654 -8.86408 -7.82927 -5.17064 -0.42159 0.04999 1.45242 1.46256 1.48563 1.54599 1.85015 2.36691 2.50845 2.66862 3.25853 3.35619 3.48351 3.50981 3.56457 3.79142 3.84571 3.95121 4.00368 4.16426 4.16760 4.21632 4.36116 4.39025 4.48943 4.60120 4.63326 4.65204 4.66806 4.70136 4.77467 4.82389 4.88791 4.97589 5.05885 5.09245 5.18707 5.21466 5.37826 5.42662 5.52525 5.53929 5.67528 5.78095 6.21560 6.24305 6.53865 6.77509 6.96698 7.10429 7.80691 8.48959 9.28625 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.003326 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.069040 B = 8415.245158 C = 9517.813192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.016 3.984 3 C -0.185 4.185 4 C 0.328 3.672 5 O -0.487 6.487 6 N -0.528 5.528 7 C 0.163 3.837 8 C -0.208 4.208 9 C 0.571 3.429 10 O -0.563 6.563 11 N -0.597 5.597 12 C 0.115 3.885 13 C -0.123 4.123 14 C 0.158 3.842 15 H 0.025 0.975 16 C -0.109 4.109 17 H 0.062 0.938 18 C -0.120 4.120 19 C 0.182 3.818 20 N -0.616 5.616 21 C -0.231 4.231 22 H 0.086 0.914 23 C -0.068 4.068 24 N -0.953 5.953 25 Si 0.973 3.027 26 H -0.279 1.279 27 H -0.298 1.298 28 H -0.276 1.276 29 C 0.136 3.864 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.075 0.925 33 H 0.174 0.826 34 H 0.425 0.575 35 H 0.183 0.817 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.050 0.950 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.005 0.995 43 H 0.015 0.985 44 H 0.245 0.755 45 H 0.090 0.910 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 14.184 -18.082 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.008 3.992 3 C -0.206 4.206 4 C 0.150 3.850 5 O -0.299 6.299 6 N -0.248 5.248 7 C 0.005 3.995 8 C -0.213 4.213 9 C 0.359 3.641 10 O -0.443 6.443 11 N -0.328 5.328 12 C -0.008 4.008 13 C -0.162 4.162 14 C 0.051 3.949 15 H 0.043 0.957 16 C -0.129 4.129 17 H 0.081 0.919 18 C -0.159 4.159 19 C 0.057 3.943 20 N -0.340 5.340 21 C -0.360 4.360 22 H 0.104 0.896 23 C -0.261 4.261 24 N -0.603 5.603 25 Si 0.801 3.199 26 H -0.205 1.205 27 H -0.224 1.224 28 H -0.202 1.202 29 C 0.014 3.986 30 H 0.099 0.901 31 H 0.120 0.880 32 H 0.094 0.906 33 H 0.191 0.809 34 H 0.288 0.712 35 H 0.199 0.801 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.093 0.907 39 H 0.068 0.932 40 H 0.099 0.901 41 H 0.097 0.903 42 H 0.023 0.977 43 H 0.034 0.966 44 H 0.054 0.946 45 H 0.108 0.892 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.297 14.034 -17.707 23.207 hybrid contribution -0.722 -0.140 1.129 1.348 sum 4.575 13.894 -16.578 22.109 Atomic orbital electron populations 1.21069 0.88680 1.05322 1.03668 1.20433 0.97840 0.90824 0.90101 1.22149 0.93405 1.00002 1.05059 1.19544 0.87623 0.85370 0.92456 1.84679 1.75770 1.33312 1.36101 1.67234 1.42417 0.98755 1.16345 1.22921 0.89657 0.95901 0.90994 1.20803 0.95951 0.94052 1.10532 1.18188 0.81647 0.83320 0.80958 1.90743 1.35647 1.79345 1.38543 1.48284 1.36076 1.18543 1.29884 1.22002 0.89219 1.02923 0.86678 1.21754 1.00926 0.97084 0.96467 1.20736 0.94123 0.93812 0.86208 0.95722 1.22406 0.97542 0.97808 0.95148 0.91929 1.22583 1.01092 0.96445 0.95779 1.21304 0.89685 0.92109 0.91194 1.44483 1.36522 1.51626 1.01368 1.19357 1.11661 1.22005 0.82976 0.89647 1.25598 0.99038 1.00102 1.01379 1.70155 1.26548 1.35221 1.28340 0.85235 0.77551 0.77476 0.79607 1.20471 1.22409 1.20245 1.21571 0.96214 0.85186 0.95632 0.90118 0.87964 0.90630 0.80891 0.71226 0.80062 0.88676 0.88753 0.90730 0.93161 0.90089 0.90311 0.97724 0.96622 0.94601 0.89169 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 9.59 71.24 0.68 -1.67 16 2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16 3 C -0.19 -3.00 9.71 22.43 0.22 -2.78 16 4 C 0.33 6.05 7.74 84.81 0.66 6.71 16 5 O -0.49 -7.10 13.55 -87.98 -1.19 -8.30 16 6 N -0.53 -11.31 10.37 -307.80 -3.19 -14.51 16 7 C 0.16 3.28 8.65 85.04 0.74 4.02 16 8 C -0.21 -4.63 4.79 -19.99 -0.10 -4.72 16 9 C 0.57 14.90 6.65 86.72 0.58 15.48 16 10 O -0.56 -17.62 14.62 -3.97 -0.06 -17.68 16 11 N -0.60 -15.06 3.00 -821.70 -2.46 -17.53 16 12 C 0.11 2.67 5.27 86.68 0.46 3.13 16 13 C -0.12 -3.92 5.48 30.34 0.17 -3.75 16 14 C 0.16 5.96 2.55 45.31 0.12 6.07 16 15 H 0.03 0.94 7.89 -2.39 -0.02 0.92 16 16 C -0.11 -3.59 2.85 -10.09 -0.03 -3.61 16 17 H 0.06 2.29 8.14 -2.38 -0.02 2.27 16 18 C -0.12 -4.22 6.54 31.63 0.21 -4.01 16 19 C 0.18 8.85 5.45 86.85 0.47 9.32 16 20 N -0.62 -30.52 3.35 -671.03 -2.25 -32.77 16 21 C -0.23 -12.56 9.88 84.04 0.83 -11.73 16 22 H 0.09 4.38 7.21 -2.91 -0.02 4.36 16 23 C -0.07 -3.87 5.49 84.86 0.47 -3.40 16 24 N -0.95 -57.36 10.44 21.65 0.23 -57.13 16 25 Si 0.97 45.53 29.55 68.60 2.03 47.55 16 26 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 27 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 28 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 29 C 0.14 3.59 5.94 85.89 0.51 4.10 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.10 1.24 8.07 -2.38 -0.02 1.22 16 32 H 0.07 1.71 6.07 -2.38 -0.01 1.69 16 33 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 34 H 0.43 1.60 9.06 -74.06 -0.67 0.93 16 35 H 0.18 2.89 7.37 -2.91 -0.02 2.87 16 36 H 0.10 1.83 8.14 -2.38 -0.02 1.81 16 37 H 0.09 2.00 4.87 -2.39 -0.01 1.98 16 38 H 0.07 2.42 7.62 -2.39 -0.02 2.41 16 39 H 0.05 1.75 8.13 -2.39 -0.02 1.73 16 40 H 0.08 2.51 8.11 -2.39 -0.02 2.49 16 41 H 0.08 2.50 8.14 -2.39 -0.02 2.48 16 42 H 0.00 0.25 7.77 -2.39 -0.02 0.23 16 43 H 0.02 0.86 7.21 -2.39 -0.02 0.84 16 44 H 0.24 14.46 8.31 -92.71 -0.77 13.68 16 45 H 0.09 2.12 8.07 -2.39 -0.02 2.10 16 46 H 0.09 2.52 7.03 -2.39 -0.02 2.50 16 Total: -1.00 -73.64 362.16 -0.71 -74.35 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: 0.34 Total: 12.67 kcal Atomic # 6 Polarization: 7.49 SS G_CDS: 5.85 Total: 13.34 kcal Atomic # 7 Polarization: -114.25 SS G_CDS: -7.68 Total: -121.93 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -1.25 Total: -25.98 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -73.64 -0.71 -74.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036818686.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.451 kcal (2) G-P(sol) polarization free energy of solvation -73.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds