Wall clock time and date at job start Tue Mar 31 2020 16:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38360 * 119.40689 * 2 1 4 4 C 1.38339 * 119.45455 * 179.76184 * 3 2 1 5 5 C 1.39986 * 118.35046 * 0.49891 * 4 3 2 6 6 C 1.47524 * 120.59591 * 179.78171 * 5 4 3 7 7 O 1.21589 * 120.00150 * 125.30471 * 6 5 4 8 8 N 1.34777 * 119.99794 * 305.30034 * 6 5 4 9 9 C 1.44228 * 115.76275 * 354.54707 * 8 6 5 10 10 C 1.51855 * 112.74765 * 186.18201 * 9 8 6 11 11 C 1.50990 * 111.89043 * 324.22041 * 10 9 8 12 12 H 1.08997 * 108.33122 * 180.27350 * 11 10 9 13 13 C 1.53982 * 111.97267 * 60.07871 * 11 10 9 14 14 H 1.09003 * 112.41610 * 75.68794 * 13 11 10 15 15 C 1.56273 * 99.75941 * 195.22500 * 13 11 10 16 16 C 1.54649 * 102.20370 * 38.87599 * 15 13 11 17 17 N 1.46665 * 113.20962 * 301.27283 * 11 10 9 18 18 C 1.36932 * 126.19804 * 330.11923 * 17 11 10 19 19 H 1.08009 * 120.00212 * 0.02562 * 18 17 11 20 20 C 1.38809 * 120.00156 * 180.02562 * 18 17 11 21 21 N 1.31614 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47335 * 90.00168 * 22 20 18 24 24 H 1.48506 * 109.46666 * 210.00135 * 22 20 18 25 25 H 1.48494 * 109.47084 * 329.99489 * 22 20 18 26 26 C 1.43524 * 115.76355 * 174.52918 * 8 6 5 27 27 C 1.40276 * 118.80680 * 359.50121 * 5 4 3 28 28 O 1.35429 * 119.80189 * 180.27810 * 27 5 4 29 29 N 1.31878 * 119.40851 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47159 * 269.98320 * 1 2 3 31 31 H 1.09003 * 109.46809 * 29.98124 * 1 2 3 32 32 H 1.08997 * 109.47289 * 149.97880 * 1 2 3 33 33 H 1.08000 * 120.27098 * 0.03572 * 3 2 1 34 34 H 1.07998 * 120.81796 * 180.24916 * 4 3 2 35 35 H 1.08999 * 108.82241 * 65.34197 * 9 8 6 36 36 H 1.08999 * 108.82441 * 307.02842 * 9 8 6 37 37 H 1.09001 * 108.99952 * 203.60023 * 10 9 8 38 38 H 1.09003 * 108.99551 * 84.83978 * 10 9 8 39 39 H 1.08994 * 110.85763 * 157.05660 * 15 13 11 40 40 H 1.09004 * 110.85157 * 280.70567 * 15 13 11 41 41 H 1.08997 * 109.96654 * 95.29373 * 16 15 13 42 42 H 1.08999 * 109.96742 * 216.51166 * 16 15 13 43 43 H 0.97000 * 120.00779 * 180.02562 * 21 20 18 44 44 H 1.08997 * 108.16871 * 58.87500 * 26 8 6 45 45 H 1.09005 * 108.16471 * 302.28927 * 26 8 6 46 46 H 0.96693 * 114.00049 * 90.00430 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0050 5 6 4.2355 -0.0249 -0.0008 6 6 5.7097 -0.0814 -0.0007 7 8 6.2936 -0.7170 0.8557 8 7 6.4091 0.5714 -0.9500 9 6 5.6261 1.1935 -1.9892 10 6 6.4819 1.7790 -3.0985 11 6 7.7701 2.3613 -2.5679 12 1 8.3341 2.7675 -3.4075 13 6 8.6296 1.3024 -1.8530 14 1 9.1315 0.6334 -2.5520 15 6 9.6264 2.2377 -1.0955 16 6 8.7092 3.4002 -0.6495 17 7 7.5600 3.4215 -1.5765 18 6 6.4920 4.2766 -1.5210 19 1 5.7026 4.2033 -2.2546 20 6 6.4237 5.2379 -0.5219 21 7 7.3857 5.3277 0.3718 22 14 4.9663 6.4040 -0.4457 23 1 3.8994 5.8085 0.3982 24 1 5.3978 7.6978 0.1417 25 1 4.4433 6.6328 -1.8166 26 6 7.8358 0.5570 -0.7944 27 6 3.4758 -1.2041 -0.0007 28 8 4.0991 -2.4064 -0.0006 29 7 2.1545 -1.1488 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6411 2.1376 0.0006 34 1 4.1222 2.1344 0.0091 35 1 5.0272 1.9907 -1.5488 36 1 4.9556 0.4486 -2.4180 37 1 5.9194 2.5640 -3.6039 38 1 6.7170 0.9940 -3.8173 39 1 10.0560 1.7292 -0.2325 40 1 10.4082 2.5954 -1.7656 41 1 8.3621 3.2305 0.3697 42 1 9.2510 4.3443 -0.7056 43 1 7.3378 5.9992 1.0702 44 1 8.1668 -0.4816 -0.7899 45 1 8.0761 0.9887 0.1773 46 1 4.2800 -2.7555 0.8828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036828519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:30 Heat of formation + Delta-G solvation = 1.561677 kcal Electronic energy + Delta-G solvation = -30285.603535 eV Core-core repulsion = 26369.673572 eV Total energy + Delta-G solvation = -3915.929963 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.06195 -39.81499 -38.08732 -37.20718 -35.11132 -33.37876 -32.61834 -31.90717 -31.63886 -29.57427 -28.30956 -27.47622 -25.19454 -24.13044 -23.32798 -22.83258 -22.49179 -20.27168 -19.97043 -18.62239 -17.97725 -17.21528 -16.94312 -16.38795 -15.93741 -15.71118 -15.58760 -14.85495 -14.71682 -14.34374 -14.14461 -13.95360 -13.65348 -13.44716 -13.19018 -12.89406 -12.73189 -12.43402 -12.29402 -12.16856 -12.09502 -11.68742 -11.57062 -11.48287 -11.27905 -11.00087 -10.82051 -10.78327 -10.24151 -10.05092 -9.95600 -9.88914 -9.79896 -9.73608 -9.65227 -9.28512 -8.79800 -8.68378 -8.06620 -6.89439 -5.78398 -3.11097 0.71347 1.12734 2.86636 3.29053 3.33819 3.35802 3.39043 3.42014 3.75115 4.39837 4.44581 4.65986 4.75173 4.97322 5.05047 5.14017 5.25385 5.27715 5.35981 5.40289 5.41141 5.48117 5.49672 5.51082 5.68982 5.80539 5.81666 5.96565 6.00791 6.03962 6.08918 6.20198 6.28138 6.30443 6.37029 6.43690 6.45688 6.63390 6.69495 6.83857 7.12940 7.45007 7.47982 7.56978 7.65735 7.75403 7.82214 8.17025 8.44967 9.12659 9.75098 10.44265 11.33776 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.005506 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.884294 B = 5083.977946 C = 6781.255758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.162 3.838 3 C -0.186 4.186 4 C -0.020 4.020 5 C -0.193 4.193 6 C 0.561 3.439 7 O -0.541 6.541 8 N -0.565 5.565 9 C 0.123 3.877 10 C -0.124 4.124 11 C 0.170 3.830 12 H 0.026 0.974 13 C -0.113 4.113 14 H 0.082 0.918 15 C -0.143 4.143 16 C 0.177 3.823 17 N -0.591 5.591 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.006 4.006 21 N -0.917 5.917 22 Si 0.902 3.098 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 C 0.146 3.854 27 C 0.356 3.644 28 O -0.475 6.475 29 N -0.509 5.509 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.145 0.855 34 H 0.157 0.843 35 H 0.076 0.924 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.046 0.954 42 H 0.042 0.958 43 H 0.252 0.748 44 H 0.051 0.949 45 H 0.067 0.933 46 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.481 -9.484 -2.909 12.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.024 3.976 3 C -0.205 4.205 4 C -0.046 4.046 5 C -0.199 4.199 6 C 0.347 3.653 7 O -0.420 6.420 8 N -0.294 5.294 9 C 0.001 3.999 10 C -0.162 4.162 11 C 0.062 3.938 12 H 0.043 0.957 13 C -0.133 4.133 14 H 0.101 0.899 15 C -0.181 4.181 16 C 0.053 3.947 17 N -0.317 5.317 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.732 3.268 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.023 3.977 27 C 0.176 3.824 28 O -0.283 6.283 29 N -0.229 5.229 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.094 0.906 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.070 0.930 45 H 0.086 0.914 46 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.611 -10.325 -2.984 13.169 hybrid contribution -0.165 1.499 0.547 1.604 sum -7.776 -8.826 -2.437 12.012 Atomic orbital electron populations 1.20784 0.88345 1.03781 1.03372 1.21178 0.96871 0.87218 0.92323 1.21940 0.94528 0.99533 1.04538 1.21975 0.94434 0.97773 0.90403 1.21037 0.95273 0.94418 1.09196 1.17912 0.86065 0.79455 0.81882 1.90727 1.70933 1.42363 1.37947 1.46182 1.06529 1.51792 1.24926 1.20853 0.93520 0.96599 0.88973 1.21237 0.98259 0.99932 0.96810 1.20235 0.92762 0.88485 0.92339 0.95652 1.22451 0.97236 0.96604 0.97026 0.89938 1.23333 0.97614 0.98060 0.99111 1.21302 0.86361 0.93480 0.93596 1.44360 1.22459 1.34835 1.30072 1.18902 0.97822 1.08400 1.10052 0.90494 1.24760 0.98189 0.99357 0.97934 1.69938 1.32437 1.36561 1.17459 0.86276 0.82047 0.80886 0.77548 1.21625 1.21683 1.20665 1.20312 0.78631 0.99200 0.99556 1.18954 0.86208 0.84573 0.92647 1.84630 1.76711 1.32622 1.34352 1.67029 1.09182 1.30461 1.16198 0.90046 0.90189 0.90292 0.83755 0.82532 0.90565 0.93175 0.90454 0.92355 0.91891 0.92187 0.93540 0.93961 0.93736 0.93028 0.91439 0.73428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 10.16 36.00 0.37 -0.53 16 2 C 0.16 2.02 6.78 -82.53 -0.56 1.46 16 3 C -0.19 -2.34 9.71 -39.50 -0.38 -2.72 16 4 C -0.02 -0.31 8.13 -38.89 -0.32 -0.63 16 5 C -0.19 -3.20 4.57 -104.69 -0.48 -3.68 16 6 C 0.56 10.57 6.67 -12.47 -0.08 10.49 16 7 O -0.54 -11.31 16.38 2.91 0.05 -11.26 16 8 N -0.56 -10.33 3.19 -180.41 -0.58 -10.91 16 9 C 0.12 2.08 4.55 -5.83 -0.03 2.05 16 10 C -0.12 -2.03 5.10 -28.32 -0.14 -2.18 16 11 C 0.17 3.19 2.93 -68.34 -0.20 2.99 16 12 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 13 C -0.11 -1.92 3.80 -88.93 -0.34 -2.26 16 14 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 15 C -0.14 -2.55 6.14 -24.11 -0.15 -2.70 16 16 C 0.18 4.07 4.82 -2.54 -0.01 4.06 16 17 N -0.59 -13.58 3.04 -164.17 -0.50 -14.08 16 18 C -0.22 -5.55 8.84 -15.06 -0.13 -5.68 16 19 H 0.08 1.82 6.89 -52.48 -0.36 1.46 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.24 16 21 N -0.92 -25.63 10.41 55.49 0.58 -25.06 16 22 Si 0.90 20.60 29.55 -169.99 -5.02 15.58 16 23 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 C 0.15 2.65 4.61 -6.19 -0.03 2.62 16 27 C 0.36 5.61 7.76 -16.61 -0.13 5.49 16 28 O -0.48 -7.09 12.78 -20.36 -0.26 -7.35 16 29 N -0.51 -7.51 10.28 -9.21 -0.09 -7.60 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.08 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.14 1.45 8.06 -52.49 -0.42 1.02 16 34 H 0.16 2.59 6.82 -52.49 -0.36 2.23 16 35 H 0.08 1.37 4.79 -51.93 -0.25 1.12 16 36 H 0.05 0.78 7.66 -51.93 -0.40 0.38 16 37 H 0.08 1.27 7.36 -51.93 -0.38 0.89 16 38 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 1.05 7.81 -51.93 -0.41 0.64 16 40 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 41 H 0.05 1.21 7.13 -51.93 -0.37 0.84 16 42 H 0.04 1.09 7.58 -51.93 -0.39 0.69 16 43 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.05 0.90 7.97 -51.93 -0.41 0.49 16 45 H 0.07 1.39 6.64 -51.93 -0.34 1.05 16 46 H 0.41 4.51 9.06 45.56 0.41 4.93 16 LS Contribution 360.01 15.07 5.43 5.43 Total: -1.00 -31.50 360.01 -8.89 -40.39 By element: Atomic # 1 Polarization: 12.09 SS G_CDS: -5.78 Total: 6.31 kcal Atomic # 6 Polarization: 11.27 SS G_CDS: -2.71 Total: 8.56 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.59 Total: -57.65 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.21 Total: -18.61 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.50 -8.89 -40.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -31.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds