Wall clock time and date at job start Tue Mar 31 2020 16:07:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38360 * 119.40689 * 2 1 4 4 C 1.38339 * 119.45455 * 179.76184 * 3 2 1 5 5 C 1.39986 * 118.35046 * 0.49891 * 4 3 2 6 6 C 1.47524 * 120.59591 * 179.78171 * 5 4 3 7 7 O 1.21589 * 120.00150 * 125.30471 * 6 5 4 8 8 N 1.34777 * 119.99794 * 305.30034 * 6 5 4 9 9 C 1.44228 * 115.76275 * 354.54707 * 8 6 5 10 10 C 1.51855 * 112.74765 * 186.18201 * 9 8 6 11 11 C 1.50990 * 111.89043 * 324.22041 * 10 9 8 12 12 H 1.08997 * 108.33122 * 180.27350 * 11 10 9 13 13 C 1.53982 * 111.97267 * 60.07871 * 11 10 9 14 14 H 1.09003 * 112.41610 * 75.68794 * 13 11 10 15 15 C 1.56273 * 99.75941 * 195.22500 * 13 11 10 16 16 C 1.54649 * 102.20370 * 38.87599 * 15 13 11 17 17 N 1.46665 * 113.20962 * 301.27283 * 11 10 9 18 18 C 1.36932 * 126.19804 * 330.11923 * 17 11 10 19 19 H 1.08009 * 120.00212 * 0.02562 * 18 17 11 20 20 C 1.38809 * 120.00156 * 180.02562 * 18 17 11 21 21 N 1.31614 * 120.00327 * 0.02562 * 20 18 17 22 22 Si 1.86806 * 120.00060 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47335 * 90.00168 * 22 20 18 24 24 H 1.48506 * 109.46666 * 210.00135 * 22 20 18 25 25 H 1.48494 * 109.47084 * 329.99489 * 22 20 18 26 26 C 1.43524 * 115.76355 * 174.52918 * 8 6 5 27 27 C 1.40276 * 118.80680 * 359.50121 * 5 4 3 28 28 O 1.35429 * 119.80189 * 180.27810 * 27 5 4 29 29 N 1.31878 * 119.40851 * 180.02562 * 2 1 3 30 30 H 1.09000 * 109.47159 * 269.98320 * 1 2 3 31 31 H 1.09003 * 109.46809 * 29.98124 * 1 2 3 32 32 H 1.08997 * 109.47289 * 149.97880 * 1 2 3 33 33 H 1.08000 * 120.27098 * 0.03572 * 3 2 1 34 34 H 1.07998 * 120.81796 * 180.24916 * 4 3 2 35 35 H 1.08999 * 108.82241 * 65.34197 * 9 8 6 36 36 H 1.08999 * 108.82441 * 307.02842 * 9 8 6 37 37 H 1.09001 * 108.99952 * 203.60023 * 10 9 8 38 38 H 1.09003 * 108.99551 * 84.83978 * 10 9 8 39 39 H 1.08994 * 110.85763 * 157.05660 * 15 13 11 40 40 H 1.09004 * 110.85157 * 280.70567 * 15 13 11 41 41 H 1.08997 * 109.96654 * 95.29373 * 16 15 13 42 42 H 1.08999 * 109.96742 * 216.51166 * 16 15 13 43 43 H 0.97000 * 120.00779 * 180.02562 * 21 20 18 44 44 H 1.08997 * 108.16871 * 58.87500 * 26 8 6 45 45 H 1.09005 * 108.16471 * 302.28927 * 26 8 6 46 46 H 0.96693 * 114.00049 * 90.00430 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2053 0.0000 4 6 3.5697 1.2065 0.0050 5 6 4.2355 -0.0249 -0.0008 6 6 5.7097 -0.0814 -0.0007 7 8 6.2936 -0.7170 0.8557 8 7 6.4091 0.5714 -0.9500 9 6 5.6261 1.1935 -1.9892 10 6 6.4819 1.7790 -3.0985 11 6 7.7701 2.3613 -2.5679 12 1 8.3341 2.7675 -3.4075 13 6 8.6296 1.3024 -1.8530 14 1 9.1315 0.6334 -2.5520 15 6 9.6264 2.2377 -1.0955 16 6 8.7092 3.4002 -0.6495 17 7 7.5600 3.4215 -1.5765 18 6 6.4920 4.2766 -1.5210 19 1 5.7026 4.2033 -2.2546 20 6 6.4237 5.2379 -0.5219 21 7 7.3857 5.3277 0.3718 22 14 4.9663 6.4040 -0.4457 23 1 3.8994 5.8085 0.3982 24 1 5.3978 7.6978 0.1417 25 1 4.4433 6.6328 -1.8166 26 6 7.8358 0.5570 -0.7944 27 6 3.4758 -1.2041 -0.0007 28 8 4.0991 -2.4064 -0.0006 29 7 2.1545 -1.1488 -0.0005 30 1 -0.3633 -0.0003 1.0277 31 1 -0.3633 0.8902 -0.5136 32 1 -0.3634 -0.8898 -0.5141 33 1 1.6411 2.1376 0.0006 34 1 4.1222 2.1344 0.0091 35 1 5.0272 1.9907 -1.5488 36 1 4.9556 0.4486 -2.4180 37 1 5.9194 2.5640 -3.6039 38 1 6.7170 0.9940 -3.8173 39 1 10.0560 1.7292 -0.2325 40 1 10.4082 2.5954 -1.7656 41 1 8.3621 3.2305 0.3697 42 1 9.2510 4.3443 -0.7056 43 1 7.3378 5.9992 1.0702 44 1 8.1668 -0.4816 -0.7899 45 1 8.0761 0.9887 0.1773 46 1 4.2800 -2.7555 0.8828 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036828519.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:29 Heat of formation + Delta-G solvation = -21.744175 kcal Electronic energy + Delta-G solvation = -30286.614153 eV Core-core repulsion = 26369.673572 eV Total energy + Delta-G solvation = -3916.940581 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34055 -41.12618 -39.58304 -38.33157 -36.64402 -34.91874 -33.97881 -33.44655 -32.64510 -31.26483 -29.68208 -28.73900 -26.85596 -25.65458 -24.55025 -24.18612 -23.69969 -21.90355 -21.42743 -19.78385 -19.46825 -18.64969 -18.29760 -17.93194 -17.36167 -17.01827 -16.88863 -16.51006 -16.08336 -15.75222 -15.62734 -15.14148 -14.94140 -14.76223 -14.52896 -14.27284 -13.97588 -13.88885 -13.61853 -13.28609 -13.14655 -13.08057 -12.99281 -12.88567 -12.73953 -12.71207 -12.42257 -12.29581 -12.01468 -11.57693 -11.53917 -11.43821 -11.30660 -11.20572 -10.96712 -10.64628 -10.52143 -9.88103 -9.51537 -8.81089 -7.77169 -5.10151 -0.40791 0.00550 1.46352 1.48798 1.49385 1.56918 1.99621 2.32953 2.53119 2.63325 3.27026 3.41797 3.53040 3.57096 3.66781 3.76977 3.84645 3.93883 4.01303 4.10763 4.14589 4.22987 4.37601 4.46574 4.54014 4.55146 4.67976 4.75403 4.79400 4.81652 4.86066 4.94076 5.00881 5.01863 5.02829 5.12456 5.16405 5.27906 5.37067 5.47158 5.56909 5.67517 5.72731 5.80259 6.23234 6.25084 6.41945 6.74652 7.01286 7.14649 7.85250 8.53675 9.34769 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.011021 B = 0.005506 C = 0.004128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2539.884294 B = 5083.977946 C = 6781.255758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.168 3.832 3 C -0.177 4.177 4 C -0.028 4.028 5 C -0.213 4.213 6 C 0.554 3.446 7 O -0.572 6.572 8 N -0.568 5.568 9 C 0.126 3.874 10 C -0.120 4.120 11 C 0.160 3.840 12 H 0.035 0.965 13 C -0.098 4.098 14 H 0.125 0.875 15 C -0.130 4.130 16 C 0.187 3.813 17 N -0.606 5.606 18 C -0.211 4.211 19 H 0.091 0.909 20 C -0.069 4.069 21 N -0.955 5.955 22 Si 0.960 3.040 23 H -0.282 1.282 24 H -0.308 1.308 25 H -0.264 1.264 26 C 0.148 3.852 27 C 0.352 3.648 28 O -0.485 6.485 29 N -0.520 5.520 30 H 0.098 0.902 31 H 0.106 0.894 32 H 0.081 0.919 33 H 0.175 0.825 34 H 0.137 0.863 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.080 0.920 41 H 0.002 0.998 42 H 0.004 0.996 43 H 0.240 0.760 44 H 0.062 0.938 45 H 0.032 0.968 46 H 0.419 0.581 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.607 -10.574 -5.117 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.030 3.970 3 C -0.196 4.196 4 C -0.054 4.054 5 C -0.220 4.220 6 C 0.342 3.658 7 O -0.453 6.453 8 N -0.297 5.297 9 C 0.003 3.997 10 C -0.158 4.158 11 C 0.054 3.946 12 H 0.052 0.948 13 C -0.118 4.118 14 H 0.142 0.858 15 C -0.169 4.169 16 C 0.061 3.939 17 N -0.332 5.332 18 C -0.340 4.340 19 H 0.109 0.891 20 C -0.262 4.262 21 N -0.605 5.605 22 Si 0.790 3.210 23 H -0.209 1.209 24 H -0.235 1.235 25 H -0.189 1.189 26 C 0.025 3.975 27 C 0.172 3.828 28 O -0.295 6.295 29 N -0.241 5.241 30 H 0.116 0.884 31 H 0.124 0.876 32 H 0.100 0.900 33 H 0.193 0.807 34 H 0.155 0.845 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.097 0.903 38 H 0.110 0.890 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.020 0.980 42 H 0.022 0.978 43 H 0.049 0.951 44 H 0.080 0.920 45 H 0.051 0.949 46 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -9.753 -11.443 -5.243 15.924 hybrid contribution 0.450 1.809 1.225 2.231 sum -9.303 -9.634 -4.018 13.982 Atomic orbital electron populations 1.20946 0.85055 1.05244 1.04802 1.21917 0.98826 0.86405 0.89889 1.22249 0.93299 1.01043 1.03015 1.21863 0.95668 0.96455 0.91376 1.20875 0.93861 0.95439 1.11797 1.18354 0.87223 0.78842 0.81380 1.90689 1.71858 1.43809 1.38989 1.46303 1.06606 1.51536 1.25252 1.20889 0.93551 0.96585 0.88645 1.21232 0.96758 1.00838 0.96996 1.20495 0.94637 0.87897 0.91612 0.94799 1.22499 0.96236 0.96306 0.96747 0.85756 1.23208 0.97265 0.96276 1.00115 1.20988 0.87068 0.93846 0.91964 1.44600 1.21886 1.35804 1.30865 1.19297 0.98071 1.07461 1.09144 0.89143 1.25516 1.00663 1.01627 0.98373 1.70186 1.34608 1.37321 1.18397 0.85329 0.79462 0.78136 0.78103 1.20918 1.23514 1.18875 1.20269 0.79120 0.99628 0.98464 1.19003 0.86657 0.84418 0.92687 1.84574 1.76853 1.32437 1.35646 1.67170 1.08479 1.31589 1.16828 0.88401 0.87589 0.89992 0.80742 0.84515 0.92105 0.91468 0.90260 0.89035 0.90863 0.90114 0.97982 0.97771 0.95071 0.92020 0.94934 0.71948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.35 10.16 71.24 0.72 -0.63 16 2 C 0.17 3.73 6.78 42.58 0.29 4.02 16 3 C -0.18 -4.04 9.71 22.32 0.22 -3.82 16 4 C -0.03 -0.84 8.13 22.72 0.18 -0.65 16 5 C -0.21 -7.06 4.57 -19.91 -0.09 -7.15 16 6 C 0.55 21.26 6.67 86.69 0.58 21.84 16 7 O -0.57 -24.68 16.38 -1.72 -0.03 -24.71 16 8 N -0.57 -20.64 3.19 -842.96 -2.69 -23.33 16 9 C 0.13 4.06 4.55 86.43 0.39 4.45 16 10 C -0.12 -3.60 5.10 29.56 0.15 -3.45 16 11 C 0.16 5.71 2.93 44.64 0.13 5.84 16 12 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 13 C -0.10 -3.12 3.80 -9.70 -0.04 -3.16 16 14 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 15 C -0.13 -4.58 6.14 32.29 0.20 -4.38 16 16 C 0.19 8.94 4.82 86.72 0.42 9.35 16 17 N -0.61 -28.03 3.04 -673.30 -2.05 -30.08 16 18 C -0.21 -10.52 8.84 84.03 0.74 -9.78 16 19 H 0.09 4.19 6.89 -2.91 -0.02 4.17 16 20 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.95 -56.30 10.41 21.65 0.23 -56.07 16 22 Si 0.96 42.98 29.55 68.60 2.03 45.01 16 23 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 24 H -0.31 -14.53 7.11 99.48 0.71 -13.82 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 C 0.15 5.34 4.61 86.56 0.40 5.74 16 27 C 0.35 10.86 7.76 85.13 0.66 11.52 16 28 O -0.49 -14.30 12.78 -84.97 -1.09 -15.39 16 29 N -0.52 -14.46 10.28 -296.06 -3.04 -17.51 16 30 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.11 0.88 8.07 -2.39 -0.02 0.86 16 32 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.18 2.87 8.06 -2.91 -0.02 2.84 16 34 H 0.14 4.64 6.82 -2.91 -0.02 4.62 16 35 H 0.06 2.16 4.79 -2.39 -0.01 2.15 16 36 H 0.07 1.95 7.66 -2.39 -0.02 1.93 16 37 H 0.08 2.37 7.36 -2.39 -0.02 2.35 16 38 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 39 H 0.07 2.42 7.81 -2.39 -0.02 2.40 16 40 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.00 0.11 7.13 -2.39 -0.02 0.09 16 42 H 0.00 0.22 7.58 -2.39 -0.02 0.20 16 43 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 44 H 0.06 2.09 7.97 -2.39 -0.02 2.07 16 45 H 0.03 1.39 6.64 -2.38 -0.02 1.38 16 46 H 0.42 9.35 9.06 -74.06 -0.67 8.68 16 Total: -1.00 -72.23 360.01 -0.88 -73.11 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.34 Total: 22.49 kcal Atomic # 6 Polarization: 21.06 SS G_CDS: 5.42 Total: 26.48 kcal Atomic # 7 Polarization: -119.43 SS G_CDS: -7.56 Total: -126.99 kcal Atomic # 8 Polarization: -38.98 SS G_CDS: -1.11 Total: -40.10 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -72.23 -0.88 -73.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828519.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.363 kcal (2) G-P(sol) polarization free energy of solvation -72.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds