Wall clock time and date at job start Tue Mar 31 2020 16:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 119.40976 * 2 1 4 4 C 1.38334 * 119.46161 * 179.71660 * 3 2 1 5 5 C 1.39990 * 118.34893 * 0.56418 * 4 3 2 6 6 C 1.47518 * 120.60280 * 179.71113 * 5 4 3 7 7 O 1.21592 * 120.00454 * 234.22241 * 6 5 4 8 8 N 1.34774 * 119.99905 * 54.21371 * 6 5 4 9 9 C 1.46602 * 119.68562 * 175.42639 * 8 6 5 10 10 C 1.55185 * 110.49305 * 228.36796 * 9 8 6 11 11 C 1.51516 * 106.72445 * 308.54814 * 10 9 8 12 12 H 1.08995 * 109.28983 * 306.76294 * 11 10 9 13 13 C 1.55364 * 107.78537 * 65.32746 * 11 10 9 14 14 H 1.08998 * 111.50662 * 49.83439 * 13 11 10 15 15 C 1.53743 * 100.22195 * 168.50889 * 13 11 10 16 16 C 1.55286 * 101.83910 * 320.90239 * 15 13 11 17 17 N 1.45473 * 116.86673 * 182.06695 * 11 10 9 18 18 C 1.36937 * 126.40304 * 30.89016 * 17 11 10 19 19 H 1.08004 * 119.99925 * 359.97438 * 18 17 11 20 20 C 1.38814 * 119.99996 * 180.02562 * 18 17 11 21 21 N 1.31622 * 119.99713 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46992 * 59.99404 * 22 20 18 24 24 H 1.48494 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46928 * 299.99487 * 22 20 18 26 26 C 1.47721 * 119.68743 * 355.70475 * 8 6 5 27 27 C 1.40285 * 118.80116 * 359.43909 * 5 4 3 28 28 O 1.35426 * 119.79570 * 180.27015 * 27 5 4 29 29 N 1.31884 * 119.40930 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47363 * 269.97558 * 1 2 3 31 31 H 1.09000 * 109.47215 * 29.98008 * 1 2 3 32 32 H 1.09005 * 109.46875 * 149.98156 * 1 2 3 33 33 H 1.07997 * 120.27058 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.82781 * 180.27869 * 4 3 2 35 35 H 1.08992 * 109.25708 * 348.38747 * 9 8 6 36 36 H 1.08996 * 109.25499 * 107.82417 * 9 8 6 37 37 H 1.09005 * 109.79028 * 189.50528 * 10 9 8 38 38 H 1.09000 * 110.63987 * 68.06801 * 10 9 8 39 39 H 1.08998 * 110.95629 * 79.04391 * 15 13 11 40 40 H 1.09002 * 110.95067 * 202.76430 * 15 13 11 41 41 H 1.08999 * 109.91968 * 263.12881 * 16 15 13 42 42 H 1.09006 * 109.91874 * 141.83221 * 16 15 13 43 43 H 0.96996 * 119.99509 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.06724 * 246.86851 * 26 8 6 45 45 H 1.08997 * 110.06759 * 8.33777 * 26 8 6 46 46 H 0.96700 * 113.99739 * 90.00578 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0060 5 6 4.2356 -0.0249 -0.0003 6 6 5.7097 -0.0815 -0.0008 7 8 6.2935 -0.7157 -0.8583 8 7 6.4094 0.5699 0.9492 9 6 7.8675 0.4276 1.0028 10 6 8.3298 0.1125 2.4503 11 6 7.7008 1.1598 3.3466 12 1 7.9412 2.1520 2.9647 13 6 6.1611 0.9562 3.3064 14 1 5.8908 -0.0844 3.4860 15 6 5.7346 1.8701 4.4668 16 6 6.8563 1.6075 5.5080 17 7 8.0304 1.0975 4.7621 18 6 9.2060 0.6505 5.3039 19 1 9.9981 0.2985 4.6596 20 6 9.3791 0.6487 6.6812 21 7 8.4135 1.0772 7.4663 22 14 10.9830 0.0396 7.4202 23 1 12.1064 0.8710 6.9184 24 1 10.9157 0.1404 8.9002 25 1 11.2018 -1.3762 7.0294 26 6 5.6992 1.4155 1.9304 27 6 3.4757 -1.2041 -0.0003 28 8 4.0992 -2.4064 -0.0008 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1344 0.0106 35 1 8.1737 -0.3863 0.3458 36 1 8.3317 1.3545 0.6661 37 1 9.4162 0.1754 2.5127 38 1 7.9982 -0.8811 2.7519 39 1 5.7267 2.9152 4.1573 40 1 4.7616 1.5738 4.8588 41 1 6.5243 0.8633 6.2319 42 1 7.1147 2.5358 6.0176 43 1 8.5346 1.0763 8.4287 44 1 5.9593 2.4631 1.7789 45 1 4.6222 1.2797 1.8309 46 1 4.2804 -2.7557 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036828520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:34 Heat of formation + Delta-G solvation = 0.069024 kcal Electronic energy + Delta-G solvation = -29259.475846 eV Core-core repulsion = 25343.481157 eV Total energy + Delta-G solvation = -3915.994689 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23106 -39.80219 -38.25319 -37.42753 -35.32097 -33.64504 -32.62533 -31.89023 -31.61694 -29.64980 -28.39438 -27.91205 -25.05020 -23.95595 -23.75970 -22.81834 -22.19399 -20.33526 -20.01763 -19.36864 -18.76531 -17.39770 -17.14073 -16.67098 -16.19933 -15.67763 -15.15334 -14.97453 -14.85283 -14.49416 -14.30629 -13.93802 -13.89365 -13.53499 -13.21321 -13.13137 -12.91703 -12.68664 -12.55701 -12.42112 -12.22546 -11.88205 -11.78713 -11.62225 -11.44859 -10.85938 -10.83768 -10.72075 -10.34608 -10.20811 -10.16369 -10.06139 -9.95987 -9.69817 -9.66523 -9.43595 -9.04981 -8.67130 -8.58599 -6.89550 -5.76448 -3.09742 0.45445 0.81796 2.55410 2.89343 3.19533 3.37605 3.42385 3.42973 3.43192 4.15873 4.31426 4.39807 4.45467 4.66714 4.82433 4.94370 5.05106 5.12001 5.21427 5.22359 5.25424 5.31382 5.40704 5.46538 5.53325 5.60048 5.64947 5.68516 5.74774 5.80882 5.86263 6.03077 6.10600 6.12728 6.17998 6.31091 6.38284 6.52591 6.56709 6.76352 6.98260 7.23484 7.34729 7.48951 7.53941 7.59567 7.74995 8.11415 8.19111 9.14644 9.78058 10.45143 11.36048 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.003183 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.564029 B = 8793.863069 C = 9405.667602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.187 4.187 4 C -0.027 4.027 5 C -0.196 4.196 6 C 0.563 3.437 7 O -0.525 6.525 8 N -0.599 5.599 9 C 0.116 3.884 10 C -0.128 4.128 11 C 0.167 3.833 12 H 0.021 0.979 13 C -0.125 4.125 14 H 0.079 0.921 15 C -0.135 4.135 16 C 0.177 3.823 17 N -0.595 5.595 18 C -0.227 4.227 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.922 5.922 22 Si 0.910 3.090 23 H -0.285 1.285 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.113 3.887 27 C 0.364 3.636 28 O -0.468 6.468 29 N -0.505 5.505 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.038 0.962 43 H 0.253 0.747 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.662 2.535 -13.026 19.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.207 4.207 4 C -0.053 4.053 5 C -0.202 4.202 6 C 0.349 3.651 7 O -0.402 6.402 8 N -0.332 5.332 9 C -0.006 4.006 10 C -0.167 4.167 11 C 0.059 3.941 12 H 0.038 0.962 13 C -0.146 4.146 14 H 0.097 0.903 15 C -0.174 4.174 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.355 4.355 19 H 0.096 0.904 20 C -0.203 4.203 21 N -0.569 5.569 22 Si 0.741 3.259 23 H -0.212 1.212 24 H -0.216 1.216 25 H -0.212 1.212 26 C -0.010 4.010 27 C 0.184 3.816 28 O -0.275 6.275 29 N -0.225 5.225 30 H 0.103 0.897 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.164 0.836 34 H 0.164 0.836 35 H 0.107 0.893 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.087 0.913 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.073 0.927 42 H 0.057 0.943 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.101 0.899 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.627 1.414 -13.834 20.182 hybrid contribution 1.413 0.380 1.092 1.826 sum -13.214 1.794 -12.742 18.444 Atomic orbital electron populations 1.20818 0.88137 1.03910 1.03650 1.21238 0.97067 0.87168 0.91606 1.21892 0.94356 0.99641 1.04846 1.21705 0.94459 0.97002 0.92172 1.20986 0.95231 0.94616 1.09411 1.17922 0.86013 0.79303 0.81877 1.90808 1.70509 1.42066 1.36786 1.48238 1.07862 1.46975 1.30130 1.21905 0.78066 1.02285 0.98368 1.22127 1.01390 1.00486 0.92699 1.20672 0.91062 0.95393 0.86970 0.96177 1.22642 0.99124 1.00193 0.92608 0.90250 1.22712 0.99836 0.97993 0.96856 1.21529 0.83648 0.98574 0.90997 1.44207 1.14022 1.74769 0.98933 1.18955 0.90872 1.35536 0.90157 0.90396 1.24786 0.98040 1.01472 0.96031 1.69921 1.31662 1.52172 1.03193 0.86228 0.82925 0.78635 0.78162 1.21169 1.21614 1.21158 1.22015 0.96622 0.94210 0.88124 1.18998 0.86173 0.84677 0.91762 1.84761 1.76543 1.32411 1.33823 1.67081 1.09173 1.30493 1.15710 0.89724 0.90160 0.90132 0.83646 0.83601 0.89327 0.91627 0.90452 0.91343 0.92250 0.92129 0.92713 0.94332 0.93694 0.90708 0.89920 0.73692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 10.16 36.01 0.37 -0.29 16 2 C 0.17 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.52 9.71 -39.50 -0.38 -1.90 16 4 C -0.03 -0.27 7.53 -38.89 -0.29 -0.56 16 5 C -0.20 -2.52 4.86 -104.69 -0.51 -3.03 16 6 C 0.56 8.46 6.85 -12.48 -0.09 8.38 16 7 O -0.53 -9.74 16.15 2.99 0.05 -9.69 16 8 N -0.60 -8.39 3.00 -172.94 -0.52 -8.90 16 9 C 0.12 1.70 6.34 -2.83 -0.02 1.68 16 10 C -0.13 -2.18 5.53 -26.32 -0.15 -2.33 16 11 C 0.17 3.18 2.56 -67.98 -0.17 3.00 16 12 H 0.02 0.40 7.92 -51.93 -0.41 -0.01 16 13 C -0.13 -2.00 2.86 -89.37 -0.26 -2.25 16 14 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 15 C -0.14 -2.25 6.54 -25.13 -0.16 -2.42 16 16 C 0.18 4.04 5.45 -1.92 -0.01 4.03 16 17 N -0.59 -14.29 3.35 -163.10 -0.55 -14.84 16 18 C -0.23 -6.05 9.86 -15.06 -0.15 -6.20 16 19 H 0.08 2.00 7.18 -52.48 -0.38 1.62 16 20 C -0.01 -0.19 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.34 10.44 55.49 0.58 -25.77 16 22 Si 0.91 21.68 29.55 -169.99 -5.02 16.65 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 25 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 26 C 0.11 1.41 5.01 -3.76 -0.02 1.39 16 27 C 0.36 4.92 7.76 -16.61 -0.13 4.79 16 28 O -0.47 -6.36 12.78 -20.26 -0.26 -6.62 16 29 N -0.50 -6.35 10.28 -9.21 -0.09 -6.45 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.15 0.70 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.11 7.40 -52.49 -0.39 0.72 16 35 H 0.09 1.35 6.98 -51.93 -0.36 0.98 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.08 1.35 7.59 -51.93 -0.39 0.96 16 38 H 0.07 1.24 8.11 -51.93 -0.42 0.82 16 39 H 0.06 0.90 8.11 -51.93 -0.42 0.47 16 40 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.05 1.40 7.21 -51.93 -0.37 1.03 16 42 H 0.04 0.97 7.77 -51.93 -0.40 0.57 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.07 0.85 8.08 -51.93 -0.42 0.43 16 45 H 0.08 0.90 4.75 -51.93 -0.25 0.65 16 46 H 0.40 3.75 9.06 45.56 0.41 4.16 16 LS Contribution 365.44 15.07 5.51 5.51 Total: -1.00 -34.11 365.44 -8.83 -42.94 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -5.90 Total: 2.12 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -2.62 Total: 5.05 kcal Atomic # 7 Polarization: -55.37 SS G_CDS: -0.58 Total: -55.95 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.21 Total: -16.31 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.11 -8.83 -42.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.007 kcal (2) G-P(sol) polarization free energy of solvation -34.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.938 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds