Wall clock time and date at job start Tue Mar 31 2020 16:07:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38352 * 119.40976 * 2 1 4 4 C 1.38334 * 119.46161 * 179.71660 * 3 2 1 5 5 C 1.39990 * 118.34893 * 0.56418 * 4 3 2 6 6 C 1.47518 * 120.60280 * 179.71113 * 5 4 3 7 7 O 1.21592 * 120.00454 * 234.22241 * 6 5 4 8 8 N 1.34774 * 119.99905 * 54.21371 * 6 5 4 9 9 C 1.46602 * 119.68562 * 175.42639 * 8 6 5 10 10 C 1.55185 * 110.49305 * 228.36796 * 9 8 6 11 11 C 1.51516 * 106.72445 * 308.54814 * 10 9 8 12 12 H 1.08995 * 109.28983 * 306.76294 * 11 10 9 13 13 C 1.55364 * 107.78537 * 65.32746 * 11 10 9 14 14 H 1.08998 * 111.50662 * 49.83439 * 13 11 10 15 15 C 1.53743 * 100.22195 * 168.50889 * 13 11 10 16 16 C 1.55286 * 101.83910 * 320.90239 * 15 13 11 17 17 N 1.45473 * 116.86673 * 182.06695 * 11 10 9 18 18 C 1.36937 * 126.40304 * 30.89016 * 17 11 10 19 19 H 1.08004 * 119.99925 * 359.97438 * 18 17 11 20 20 C 1.38814 * 119.99996 * 180.02562 * 18 17 11 21 21 N 1.31622 * 119.99713 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00066 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.46992 * 59.99404 * 22 20 18 24 24 H 1.48494 * 109.46917 * 179.97438 * 22 20 18 25 25 H 1.48497 * 109.46928 * 299.99487 * 22 20 18 26 26 C 1.47721 * 119.68743 * 355.70475 * 8 6 5 27 27 C 1.40285 * 118.80116 * 359.43909 * 5 4 3 28 28 O 1.35426 * 119.79570 * 180.27015 * 27 5 4 29 29 N 1.31884 * 119.40930 * 180.02562 * 2 1 3 30 30 H 1.08999 * 109.47363 * 269.97558 * 1 2 3 31 31 H 1.09000 * 109.47215 * 29.98008 * 1 2 3 32 32 H 1.09005 * 109.46875 * 149.98156 * 1 2 3 33 33 H 1.07997 * 120.27058 * 0.02562 * 3 2 1 34 34 H 1.07999 * 120.82781 * 180.27869 * 4 3 2 35 35 H 1.08992 * 109.25708 * 348.38747 * 9 8 6 36 36 H 1.08996 * 109.25499 * 107.82417 * 9 8 6 37 37 H 1.09005 * 109.79028 * 189.50528 * 10 9 8 38 38 H 1.09000 * 110.63987 * 68.06801 * 10 9 8 39 39 H 1.08998 * 110.95629 * 79.04391 * 15 13 11 40 40 H 1.09002 * 110.95067 * 202.76430 * 15 13 11 41 41 H 1.08999 * 109.91968 * 263.12881 * 16 15 13 42 42 H 1.09006 * 109.91874 * 141.83221 * 16 15 13 43 43 H 0.96996 * 119.99509 * 180.02562 * 21 20 18 44 44 H 1.09006 * 110.06724 * 246.86851 * 26 8 6 45 45 H 1.08997 * 110.06759 * 8.33777 * 26 8 6 46 46 H 0.96700 * 113.99739 * 90.00578 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5697 1.2065 0.0060 5 6 4.2356 -0.0249 -0.0003 6 6 5.7097 -0.0815 -0.0008 7 8 6.2935 -0.7157 -0.8583 8 7 6.4094 0.5699 0.9492 9 6 7.8675 0.4276 1.0028 10 6 8.3298 0.1125 2.4503 11 6 7.7008 1.1598 3.3466 12 1 7.9412 2.1520 2.9647 13 6 6.1611 0.9562 3.3064 14 1 5.8908 -0.0844 3.4860 15 6 5.7346 1.8701 4.4668 16 6 6.8563 1.6075 5.5080 17 7 8.0304 1.0975 4.7621 18 6 9.2060 0.6505 5.3039 19 1 9.9981 0.2985 4.6596 20 6 9.3791 0.6487 6.6812 21 7 8.4135 1.0772 7.4663 22 14 10.9830 0.0396 7.4202 23 1 12.1064 0.8710 6.9184 24 1 10.9157 0.1404 8.9002 25 1 11.2018 -1.3762 7.0294 26 6 5.6992 1.4155 1.9304 27 6 3.4757 -1.2041 -0.0003 28 8 4.0992 -2.4064 -0.0008 29 7 2.1546 -1.1489 -0.0005 30 1 -0.3634 -0.0004 1.0276 31 1 -0.3634 0.8902 -0.5135 32 1 -0.3633 -0.8899 -0.5141 33 1 1.6412 2.1375 0.0004 34 1 4.1223 2.1344 0.0106 35 1 8.1737 -0.3863 0.3458 36 1 8.3317 1.3545 0.6661 37 1 9.4162 0.1754 2.5127 38 1 7.9982 -0.8811 2.7519 39 1 5.7267 2.9152 4.1573 40 1 4.7616 1.5738 4.8588 41 1 6.5243 0.8633 6.2319 42 1 7.1147 2.5358 6.0176 43 1 8.5346 1.0763 8.4287 44 1 5.9593 2.4631 1.7789 45 1 4.6222 1.2797 1.8309 46 1 4.2804 -2.7557 0.8825 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036828520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:33 Heat of formation + Delta-G solvation = -25.812553 kcal Electronic energy + Delta-G solvation = -29260.598156 eV Core-core repulsion = 25343.481157 eV Total energy + Delta-G solvation = -3917.116999 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.17782 -40.93700 -39.59288 -38.33780 -36.75087 -34.57421 -34.40073 -32.91818 -32.61053 -31.29914 -29.66463 -28.87242 -26.70001 -25.27392 -24.71483 -23.83990 -23.31817 -21.90521 -21.37446 -20.62477 -19.67287 -18.70189 -18.19218 -18.00731 -17.36935 -16.88810 -16.64493 -16.21751 -15.94902 -15.75735 -15.57481 -15.14872 -14.80802 -14.77874 -14.46175 -14.26329 -14.10807 -13.81129 -13.59812 -13.40639 -13.16667 -13.12013 -13.03905 -12.92512 -12.69835 -12.67286 -12.49805 -12.14180 -12.05750 -11.78257 -11.61265 -11.47912 -11.31694 -11.15795 -10.73500 -10.68926 -10.46838 -9.90714 -9.71041 -8.86110 -7.83961 -5.17377 -0.34989 0.08100 1.45001 1.45493 1.47044 1.53062 1.85501 2.39463 2.49892 2.63573 3.23146 3.34622 3.44411 3.60626 3.72300 3.79257 3.92211 3.98388 4.01603 4.17681 4.23398 4.29525 4.36804 4.42850 4.47977 4.58187 4.67944 4.71269 4.77581 4.83360 4.84768 4.88844 4.94460 5.01533 5.05934 5.12113 5.17547 5.18514 5.44822 5.51325 5.53530 5.54834 5.69132 5.79847 6.21327 6.22187 6.44577 6.82786 6.98790 7.10962 7.80925 8.47922 9.27183 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.018581 B = 0.003183 C = 0.002976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1506.564029 B = 8793.863069 C = 9405.667602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.170 4.170 4 C -0.025 4.025 5 C -0.217 4.217 6 C 0.567 3.433 7 O -0.569 6.569 8 N -0.597 5.597 9 C 0.126 3.874 10 C -0.120 4.120 11 C 0.156 3.844 12 H 0.029 0.971 13 C -0.110 4.110 14 H 0.061 0.939 15 C -0.116 4.116 16 C 0.179 3.821 17 N -0.617 5.617 18 C -0.231 4.231 19 H 0.081 0.919 20 C -0.066 4.066 21 N -0.951 5.951 22 Si 0.970 3.030 23 H -0.278 1.278 24 H -0.296 1.296 25 H -0.281 1.281 26 C 0.122 3.878 27 C 0.341 3.659 28 O -0.491 6.491 29 N -0.532 5.532 30 H 0.097 0.903 31 H 0.110 0.890 32 H 0.070 0.930 33 H 0.190 0.810 34 H 0.174 0.826 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.049 0.951 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.015 0.985 42 H 0.005 0.995 43 H 0.245 0.755 44 H 0.102 0.898 45 H 0.108 0.892 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.691 4.682 -14.659 22.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.021 3.979 3 C -0.189 4.189 4 C -0.050 4.050 5 C -0.223 4.223 6 C 0.355 3.645 7 O -0.448 6.448 8 N -0.328 5.328 9 C 0.003 3.997 10 C -0.159 4.159 11 C 0.049 3.951 12 H 0.046 0.954 13 C -0.130 4.130 14 H 0.080 0.920 15 C -0.154 4.154 16 C 0.054 3.946 17 N -0.341 5.341 18 C -0.361 4.361 19 H 0.099 0.901 20 C -0.259 4.259 21 N -0.600 5.600 22 Si 0.799 3.201 23 H -0.204 1.204 24 H -0.222 1.222 25 H -0.207 1.207 26 C 0.000 4.000 27 C 0.162 3.838 28 O -0.300 6.300 29 N -0.252 5.252 30 H 0.115 0.885 31 H 0.128 0.872 32 H 0.089 0.911 33 H 0.207 0.793 34 H 0.191 0.809 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.105 0.895 40 H 0.101 0.899 41 H 0.033 0.967 42 H 0.023 0.977 43 H 0.054 0.946 44 H 0.120 0.880 45 H 0.126 0.874 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -16.669 3.571 -15.490 23.033 hybrid contribution 1.970 -0.286 1.578 2.541 sum -14.699 3.285 -13.911 20.503 Atomic orbital electron populations 1.20953 0.85735 1.04970 1.04701 1.21982 0.98718 0.87033 0.90173 1.22351 0.93768 1.00694 1.02130 1.22068 0.95356 0.96511 0.91104 1.20869 0.93625 0.95890 1.11943 1.18245 0.86985 0.78139 0.81146 1.90780 1.71632 1.43820 1.38610 1.48255 1.07482 1.46971 1.30141 1.21748 0.78948 1.02955 0.96046 1.22005 1.00824 0.98954 0.94109 1.20927 0.93588 0.96005 0.84608 0.95369 1.22487 0.96513 0.99354 0.94689 0.92030 1.22561 0.98189 0.99786 0.94881 1.21346 0.85407 0.95599 0.92241 1.44498 1.13668 1.74567 1.01409 1.19318 0.92043 1.34237 0.90464 0.90083 1.25549 1.01022 1.02672 0.96679 1.70138 1.33270 1.53880 1.02715 0.85272 0.79739 0.78256 0.76826 1.20386 1.22227 1.20677 1.22107 0.97877 0.94998 0.84968 1.19198 0.86811 0.84659 0.93159 1.84712 1.76911 1.33248 1.35141 1.67116 1.08800 1.32431 1.16871 0.88492 0.87151 0.91062 0.79268 0.80902 0.90122 0.89673 0.91277 0.93258 0.89476 0.89907 0.96702 0.97721 0.94576 0.87987 0.87364 0.72511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.16 71.24 0.72 -0.18 16 2 C 0.16 2.52 6.78 42.58 0.29 2.81 16 3 C -0.17 -1.90 9.71 22.32 0.22 -1.69 16 4 C -0.02 -0.37 7.53 22.72 0.17 -0.20 16 5 C -0.22 -5.15 4.86 -19.91 -0.10 -5.25 16 6 C 0.57 16.34 6.85 86.69 0.59 16.94 16 7 O -0.57 -21.15 16.15 -1.81 -0.03 -21.17 16 8 N -0.60 -15.42 3.00 -819.33 -2.46 -17.88 16 9 C 0.13 3.53 6.34 87.11 0.55 4.08 16 10 C -0.12 -4.07 5.53 30.86 0.17 -3.90 16 11 C 0.16 5.76 2.56 45.51 0.12 5.88 16 12 H 0.03 1.04 7.92 -2.39 -0.02 1.02 16 13 C -0.11 -3.29 2.86 -9.98 -0.03 -3.32 16 14 H 0.06 2.08 8.11 -2.39 -0.02 2.06 16 15 C -0.12 -3.59 6.54 31.63 0.21 -3.39 16 16 C 0.18 8.32 5.45 86.85 0.47 8.80 16 17 N -0.62 -30.09 3.35 -669.92 -2.24 -32.33 16 18 C -0.23 -12.60 9.86 84.03 0.83 -11.77 16 19 H 0.08 4.23 7.18 -2.91 -0.02 4.21 16 20 C -0.07 -3.73 5.49 84.86 0.47 -3.26 16 21 N -0.95 -56.44 10.44 21.65 0.23 -56.21 16 22 Si 0.97 45.60 29.55 68.60 2.03 47.63 16 23 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 24 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 25 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 26 C 0.12 2.58 5.01 85.89 0.43 3.01 16 27 C 0.34 9.02 7.76 85.13 0.66 9.68 16 28 O -0.49 -13.81 12.78 -85.03 -1.09 -14.89 16 29 N -0.53 -12.70 10.28 -296.06 -3.04 -15.74 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.29 8.07 -2.39 -0.02 0.27 16 32 H 0.07 0.76 8.14 -2.38 -0.02 0.75 16 33 H 0.19 0.46 8.06 -2.91 -0.02 0.43 16 34 H 0.17 1.62 7.40 -2.91 -0.02 1.60 16 35 H 0.08 2.44 6.98 -2.39 -0.02 2.42 16 36 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.07 2.43 7.59 -2.38 -0.02 2.41 16 38 H 0.05 1.84 8.11 -2.39 -0.02 1.82 16 39 H 0.09 2.28 8.11 -2.39 -0.02 2.26 16 40 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 41 H 0.01 0.79 7.21 -2.39 -0.02 0.77 16 42 H 0.00 0.24 7.77 -2.38 -0.02 0.22 16 43 H 0.24 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.10 1.73 8.08 -2.38 -0.02 1.71 16 45 H 0.11 1.83 4.75 -2.39 -0.01 1.82 16 46 H 0.41 8.29 9.06 -74.06 -0.67 7.61 16 Total: -1.00 -79.44 365.44 -0.49 -79.93 By element: Atomic # 1 Polarization: 12.10 SS G_CDS: 0.34 Total: 12.43 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 5.77 Total: 18.24 kcal Atomic # 7 Polarization: -114.65 SS G_CDS: -7.52 Total: -122.16 kcal Atomic # 8 Polarization: -34.95 SS G_CDS: -1.12 Total: -36.07 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -79.44 -0.49 -79.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.121 kcal (2) G-P(sol) polarization free energy of solvation -79.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds