Wall clock time and date at job start Tue Mar 31 2020 16:07:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38348 * 119.40751 * 2 1 4 4 C 1.38339 * 119.45757 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.35294 * 359.97438 * 4 3 2 6 6 C 1.47518 * 120.60341 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00247 * 233.64929 * 6 5 4 8 8 N 1.34774 * 119.99996 * 53.64133 * 6 5 4 9 9 C 1.46596 * 119.68147 * 355.87029 * 8 6 5 10 10 C 1.53962 * 110.57257 * 132.15235 * 9 8 6 11 11 C 1.51232 * 107.40626 * 50.83867 * 10 9 8 12 12 H 1.09001 * 108.30879 * 53.42744 * 11 10 9 13 13 C 1.55058 * 108.10412 * 295.39896 * 11 10 9 14 14 H 1.08996 * 112.07426 * 308.94647 * 13 11 10 15 15 C 1.53744 * 100.33496 * 190.73978 * 13 11 10 16 16 C 1.55294 * 101.84458 * 38.92279 * 15 13 11 17 17 N 1.45466 * 117.53753 * 177.79233 * 11 10 9 18 18 C 1.36942 * 126.40064 * 329.91640 * 17 11 10 19 19 H 1.07990 * 120.00320 * 359.71271 * 18 17 11 20 20 C 1.38821 * 119.99499 * 179.71123 * 18 17 11 21 21 N 1.31614 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99708 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47127 * 90.00169 * 22 20 18 24 24 H 1.48494 * 109.47079 * 210.00085 * 22 20 18 25 25 H 1.48503 * 109.47030 * 330.00124 * 22 20 18 26 26 C 1.47717 * 119.68160 * 175.85244 * 8 6 5 27 27 C 1.40292 * 118.80387 * 0.27536 * 5 4 3 28 28 O 1.35424 * 119.80194 * 179.70133 * 27 5 4 29 29 N 1.31888 * 119.40607 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47259 * 89.99649 * 1 2 3 31 31 H 1.09002 * 109.46858 * 209.99499 * 1 2 3 32 32 H 1.08999 * 109.46677 * 329.99815 * 1 2 3 33 33 H 1.08002 * 120.27610 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.82648 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.25800 * 252.43533 * 9 8 6 36 36 H 1.09001 * 109.25730 * 11.91317 * 9 8 6 37 37 H 1.09002 * 109.88264 * 170.51181 * 10 9 8 38 38 H 1.08993 * 109.88132 * 291.52138 * 10 9 8 39 39 H 1.08999 * 110.96106 * 280.78380 * 15 13 11 40 40 H 1.09005 * 110.94841 * 157.05772 * 15 13 11 41 41 H 1.08999 * 109.92013 * 218.16800 * 16 15 13 42 42 H 1.08999 * 109.91964 * 96.86765 * 16 15 13 43 43 H 0.97009 * 119.99701 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.07462 * 112.87121 * 26 8 6 45 45 H 1.09002 * 110.16370 * 351.33784 * 26 8 6 46 46 H 0.96697 * 113.99681 * 90.00114 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.2356 -0.0249 -0.0005 6 6 5.7097 -0.0815 -0.0005 7 8 6.2933 -0.7286 -0.8486 8 7 6.4096 0.5840 0.9394 9 6 5.7046 1.4348 1.9028 10 6 6.1891 1.1464 3.3355 11 6 7.6999 1.2146 3.3244 12 1 7.9963 2.1714 2.8946 13 6 8.2273 0.0693 2.4220 14 1 7.7962 -0.8952 2.6902 15 6 9.7271 0.1232 2.7562 16 6 9.7035 0.4070 4.2828 17 7 8.3911 1.0221 4.5898 18 6 7.9151 1.3439 5.8329 19 1 6.9377 1.7908 5.9379 20 6 8.6893 1.0955 6.9581 21 7 9.8808 0.5513 6.8301 22 14 8.0399 1.5338 8.6539 23 1 7.2978 0.3760 9.2142 24 1 9.1768 1.8722 9.5471 25 1 7.1286 2.7016 8.5483 26 6 7.8797 0.4489 0.9892 27 6 3.4758 -1.2042 -0.0059 28 8 4.0991 -2.4065 -0.0121 29 7 2.1546 -1.1490 0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6412 2.1375 0.0004 34 1 4.1224 2.1344 -0.0010 35 1 5.8930 2.4814 1.6635 36 1 4.6342 1.2388 1.8397 37 1 5.7867 1.8928 4.0203 38 1 5.8679 0.1510 3.6420 39 1 10.2178 0.9333 2.2167 40 1 10.2081 -0.8318 2.5446 41 1 10.5068 1.0956 4.5450 42 1 9.8149 -0.5257 4.8357 43 1 10.4219 0.3781 7.6164 44 1 8.3516 1.3962 0.7284 45 1 8.2085 -0.3333 0.3049 46 1 4.2806 -2.7599 0.8695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036828522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:42 Heat of formation + Delta-G solvation = -0.375736 kcal Electronic energy + Delta-G solvation = -29151.687525 eV Core-core repulsion = 25235.673549 eV Total energy + Delta-G solvation = -3916.013976 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.23890 -39.83003 -38.20498 -37.43807 -35.46309 -33.59324 -32.54707 -31.90051 -31.65182 -29.78409 -28.50050 -27.77503 -25.05028 -24.05739 -23.63299 -22.65545 -22.37515 -20.36319 -20.01188 -19.34372 -18.77455 -17.45393 -17.15483 -16.40365 -16.32266 -15.71897 -15.23272 -14.87143 -14.84981 -14.48388 -14.29215 -14.04744 -13.83633 -13.64318 -13.25960 -13.13623 -12.82092 -12.70266 -12.52208 -12.45911 -12.30434 -11.88193 -11.71313 -11.54405 -11.47238 -10.91676 -10.86142 -10.78460 -10.32974 -10.21291 -10.09468 -10.06028 -9.89737 -9.67657 -9.58805 -9.52771 -9.05949 -8.67181 -8.59104 -6.88915 -5.76425 -3.09905 0.44012 0.80659 2.56056 2.88074 3.18846 3.35674 3.40495 3.42695 3.42909 4.16129 4.30835 4.39792 4.44541 4.65430 4.92179 4.92396 5.02000 5.04974 5.18001 5.21909 5.23007 5.27350 5.45382 5.50403 5.53810 5.58581 5.63621 5.67102 5.74496 5.82638 5.96751 6.08359 6.10336 6.12148 6.17591 6.29576 6.42533 6.54947 6.57951 6.76567 6.99410 7.23280 7.36540 7.50461 7.57027 7.58398 7.76354 8.11144 8.19373 9.14292 9.77905 10.45823 11.36002 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.003337 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.085217 B = 8389.608060 C = 9486.646957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.168 3.832 3 C -0.188 4.188 4 C -0.028 4.028 5 C -0.197 4.197 6 C 0.562 3.438 7 O -0.524 6.524 8 N -0.600 5.600 9 C 0.105 3.895 10 C -0.129 4.129 11 C 0.169 3.831 12 H 0.019 0.981 13 C -0.123 4.123 14 H 0.079 0.921 15 C -0.136 4.136 16 C 0.177 3.823 17 N -0.594 5.594 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.007 4.007 21 N -0.920 5.920 22 Si 0.910 3.090 23 H -0.289 1.289 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.127 3.873 27 C 0.364 3.636 28 O -0.467 6.467 29 N -0.505 5.505 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.146 0.854 34 H 0.146 0.854 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.066 0.934 39 H 0.059 0.941 40 H 0.062 0.938 41 H 0.039 0.961 42 H 0.054 0.946 43 H 0.253 0.747 44 H 0.071 0.929 45 H 0.091 0.909 46 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.654 2.229 -13.112 19.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.208 4.208 4 C -0.053 4.053 5 C -0.203 4.203 6 C 0.349 3.651 7 O -0.400 6.400 8 N -0.333 5.333 9 C -0.019 4.019 10 C -0.169 4.169 11 C 0.060 3.940 12 H 0.036 0.964 13 C -0.144 4.144 14 H 0.097 0.903 15 C -0.175 4.175 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.568 5.568 22 Si 0.740 3.260 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.006 3.994 27 C 0.184 3.816 28 O -0.275 6.275 29 N -0.225 5.225 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.163 0.837 34 H 0.164 0.836 35 H 0.086 0.914 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.085 0.915 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -14.659 1.136 -13.895 20.230 hybrid contribution 0.256 0.896 1.554 1.812 sum -14.403 2.032 -12.341 19.075 Atomic orbital electron populations 1.20818 0.88140 1.04014 1.03538 1.21241 0.97070 0.87178 0.91598 1.21895 0.94368 0.99636 1.04884 1.21717 0.94450 0.97032 0.92140 1.21012 0.95297 0.94597 1.09412 1.17923 0.85959 0.79475 0.81786 1.90810 1.70494 1.41636 1.37103 1.48256 1.07855 1.46434 1.30709 1.22015 0.96415 0.93963 0.89470 1.21848 0.98404 1.02706 0.93900 1.20487 0.90714 0.94655 0.88131 0.96419 1.22576 0.97779 1.00314 0.93722 0.90276 1.22721 0.94073 1.00587 1.00088 1.21535 0.87407 0.98058 0.87712 1.44205 1.14900 1.72296 1.00451 1.18980 1.00349 1.34443 0.81806 0.90411 1.24797 0.96584 1.01144 0.97837 1.69938 1.10349 1.48385 1.28083 0.86157 0.77620 0.77944 0.84257 1.21643 1.21668 1.20711 1.21665 0.77668 1.02127 0.97954 1.19015 0.86163 0.84725 0.91681 1.84767 1.76535 1.32312 1.33850 1.67096 1.09196 1.30481 1.15713 0.89884 0.90063 0.90082 0.83656 0.83595 0.91375 0.90170 0.90418 0.91545 0.92264 0.91974 0.94288 0.92731 0.93710 0.91107 0.89078 0.73706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.16 36.01 0.37 -0.29 16 2 C 0.17 1.60 6.78 -82.53 -0.56 1.04 16 3 C -0.19 -1.52 9.71 -39.50 -0.38 -1.90 16 4 C -0.03 -0.26 7.58 -38.89 -0.29 -0.56 16 5 C -0.20 -2.52 4.82 -104.69 -0.50 -3.02 16 6 C 0.56 8.44 6.87 -12.48 -0.09 8.36 16 7 O -0.52 -9.70 16.12 1.67 0.03 -9.67 16 8 N -0.60 -8.39 3.00 -173.71 -0.52 -8.91 16 9 C 0.10 1.29 5.27 -3.49 -0.02 1.28 16 10 C -0.13 -2.06 5.48 -27.12 -0.15 -2.21 16 11 C 0.17 3.21 2.55 -68.29 -0.17 3.03 16 12 H 0.02 0.36 7.89 -51.93 -0.41 -0.05 16 13 C -0.12 -2.11 2.85 -89.53 -0.26 -2.37 16 14 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 15 C -0.14 -2.44 6.54 -25.13 -0.16 -2.61 16 16 C 0.18 4.15 5.45 -1.91 -0.01 4.14 16 17 N -0.59 -14.35 3.35 -163.45 -0.55 -14.89 16 18 C -0.23 -6.02 9.88 -15.05 -0.15 -6.17 16 19 H 0.08 1.96 7.21 -52.49 -0.38 1.58 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.29 16 21 N -0.92 -26.43 10.44 55.49 0.58 -25.85 16 22 Si 0.91 21.48 29.55 -169.99 -5.02 16.46 16 23 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 C 0.13 1.89 5.94 -3.76 -0.02 1.86 16 27 C 0.36 4.90 7.76 -16.61 -0.13 4.77 16 28 O -0.47 -6.33 12.75 -21.58 -0.28 -6.61 16 29 N -0.50 -6.33 10.28 -9.21 -0.09 -6.43 16 30 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.31 8.07 -51.93 -0.42 -0.11 16 33 H 0.15 0.69 8.06 -52.49 -0.42 0.27 16 34 H 0.15 1.10 7.37 -52.48 -0.39 0.72 16 35 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 36 H 0.08 0.86 4.83 -51.93 -0.25 0.61 16 37 H 0.08 1.25 7.62 -51.93 -0.40 0.85 16 38 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 39 H 0.06 0.98 8.11 -51.93 -0.42 0.56 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.04 1.00 7.77 -51.93 -0.40 0.60 16 42 H 0.05 1.43 7.21 -51.93 -0.37 1.06 16 43 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 45 H 0.09 1.40 7.03 -51.93 -0.36 1.04 16 46 H 0.40 3.72 9.06 45.56 0.41 4.14 16 LS Contribution 365.42 15.07 5.51 5.51 Total: -1.00 -34.15 365.42 -8.89 -43.03 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -5.91 Total: 2.30 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -2.63 Total: 5.06 kcal Atomic # 7 Polarization: -55.50 SS G_CDS: -0.58 Total: -56.08 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: -0.25 Total: -16.28 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.15 -8.89 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.657 kcal (2) G-P(sol) polarization free energy of solvation -34.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.885 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds