Wall clock time and date at job start Tue Mar 31 2020 16:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38348 * 119.40751 * 2 1 4 4 C 1.38339 * 119.45757 * 180.02562 * 3 2 1 5 5 C 1.39984 * 118.35294 * 359.97438 * 4 3 2 6 6 C 1.47518 * 120.60341 * 180.02562 * 5 4 3 7 7 O 1.21590 * 120.00247 * 233.64929 * 6 5 4 8 8 N 1.34774 * 119.99996 * 53.64133 * 6 5 4 9 9 C 1.46596 * 119.68147 * 355.87029 * 8 6 5 10 10 C 1.53962 * 110.57257 * 132.15235 * 9 8 6 11 11 C 1.51232 * 107.40626 * 50.83867 * 10 9 8 12 12 H 1.09001 * 108.30879 * 53.42744 * 11 10 9 13 13 C 1.55058 * 108.10412 * 295.39896 * 11 10 9 14 14 H 1.08996 * 112.07426 * 308.94647 * 13 11 10 15 15 C 1.53744 * 100.33496 * 190.73978 * 13 11 10 16 16 C 1.55294 * 101.84458 * 38.92279 * 15 13 11 17 17 N 1.45466 * 117.53753 * 177.79233 * 11 10 9 18 18 C 1.36942 * 126.40064 * 329.91640 * 17 11 10 19 19 H 1.07990 * 120.00320 * 359.71271 * 18 17 11 20 20 C 1.38821 * 119.99499 * 179.71123 * 18 17 11 21 21 N 1.31614 * 119.99843 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 119.99708 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47127 * 90.00169 * 22 20 18 24 24 H 1.48494 * 109.47079 * 210.00085 * 22 20 18 25 25 H 1.48503 * 109.47030 * 330.00124 * 22 20 18 26 26 C 1.47717 * 119.68160 * 175.85244 * 8 6 5 27 27 C 1.40292 * 118.80387 * 0.27536 * 5 4 3 28 28 O 1.35424 * 119.80194 * 179.70133 * 27 5 4 29 29 N 1.31888 * 119.40607 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47259 * 89.99649 * 1 2 3 31 31 H 1.09002 * 109.46858 * 209.99499 * 1 2 3 32 32 H 1.08999 * 109.46677 * 329.99815 * 1 2 3 33 33 H 1.08002 * 120.27610 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.82648 * 179.97438 * 4 3 2 35 35 H 1.09003 * 109.25800 * 252.43533 * 9 8 6 36 36 H 1.09001 * 109.25730 * 11.91317 * 9 8 6 37 37 H 1.09002 * 109.88264 * 170.51181 * 10 9 8 38 38 H 1.08993 * 109.88132 * 291.52138 * 10 9 8 39 39 H 1.08999 * 110.96106 * 280.78380 * 15 13 11 40 40 H 1.09005 * 110.94841 * 157.05772 * 15 13 11 41 41 H 1.08999 * 109.92013 * 218.16800 * 16 15 13 42 42 H 1.08999 * 109.91964 * 96.86765 * 16 15 13 43 43 H 0.97009 * 119.99701 * 179.97438 * 21 20 18 44 44 H 1.09002 * 110.07462 * 112.87121 * 26 8 6 45 45 H 1.09002 * 110.16370 * 351.33784 * 26 8 6 46 46 H 0.96697 * 113.99681 * 90.00114 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1863 1.2052 0.0000 4 6 3.5697 1.2064 -0.0005 5 6 4.2356 -0.0249 -0.0005 6 6 5.7097 -0.0815 -0.0005 7 8 6.2933 -0.7286 -0.8486 8 7 6.4096 0.5840 0.9394 9 6 5.7046 1.4348 1.9028 10 6 6.1891 1.1464 3.3355 11 6 7.6999 1.2146 3.3244 12 1 7.9963 2.1714 2.8946 13 6 8.2273 0.0693 2.4220 14 1 7.7962 -0.8952 2.6902 15 6 9.7271 0.1232 2.7562 16 6 9.7035 0.4070 4.2828 17 7 8.3911 1.0221 4.5898 18 6 7.9151 1.3439 5.8329 19 1 6.9377 1.7908 5.9379 20 6 8.6893 1.0955 6.9581 21 7 9.8808 0.5513 6.8301 22 14 8.0399 1.5338 8.6539 23 1 7.2978 0.3760 9.2142 24 1 9.1768 1.8722 9.5471 25 1 7.1286 2.7016 8.5483 26 6 7.8797 0.4489 0.9892 27 6 3.4758 -1.2042 -0.0059 28 8 4.0991 -2.4065 -0.0121 29 7 2.1546 -1.1490 0.0005 30 1 -0.3634 0.0001 -1.0277 31 1 -0.3633 -0.8901 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.6412 2.1375 0.0004 34 1 4.1224 2.1344 -0.0010 35 1 5.8930 2.4814 1.6635 36 1 4.6342 1.2388 1.8397 37 1 5.7867 1.8928 4.0203 38 1 5.8679 0.1510 3.6420 39 1 10.2178 0.9333 2.2167 40 1 10.2081 -0.8318 2.5446 41 1 10.5068 1.0956 4.5450 42 1 9.8149 -0.5257 4.8357 43 1 10.4219 0.3781 7.6164 44 1 8.3516 1.3962 0.7284 45 1 8.2085 -0.3333 0.3049 46 1 4.2806 -2.7599 0.8695 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036828522.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:41 Heat of formation + Delta-G solvation = -26.115827 kcal Electronic energy + Delta-G solvation = -29152.803699 eV Core-core repulsion = 25235.673549 eV Total energy + Delta-G solvation = -3917.130150 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.18499 -40.98253 -39.55600 -38.35124 -36.85401 -34.81785 -33.96321 -33.07124 -32.62539 -31.36099 -29.84407 -28.74540 -26.71233 -25.37364 -24.52646 -23.79550 -23.45790 -21.92322 -21.43329 -20.61443 -19.68357 -18.80859 -18.07464 -17.91529 -17.39022 -16.96101 -16.65086 -16.17516 -15.99421 -15.67326 -15.58625 -15.20164 -14.93267 -14.71292 -14.53952 -14.27572 -14.05299 -13.84522 -13.56695 -13.34659 -13.23423 -13.12186 -13.05565 -12.94621 -12.70316 -12.68041 -12.50307 -12.14290 -12.01038 -11.79961 -11.62425 -11.52921 -11.28415 -11.07493 -10.79155 -10.70376 -10.48726 -9.90425 -9.72109 -8.86823 -7.82732 -5.17147 -0.36637 0.06646 1.46392 1.46969 1.48147 1.56536 1.84795 2.38474 2.51114 2.62765 3.24701 3.36227 3.48456 3.60820 3.70061 3.80478 3.86864 3.97000 3.98736 4.17197 4.19835 4.25732 4.37799 4.41236 4.49624 4.63786 4.68109 4.70774 4.77776 4.80465 4.82534 4.88612 4.92770 5.00868 5.04771 5.08058 5.15834 5.20193 5.42831 5.51587 5.53023 5.53401 5.66351 5.77028 6.21103 6.23626 6.44224 6.81251 6.99029 7.09892 7.80402 8.49116 9.29204 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.015025 B = 0.003337 C = 0.002951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.085217 B = 8389.608060 C = 9486.646957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.159 3.841 3 C -0.172 4.172 4 C -0.025 4.025 5 C -0.217 4.217 6 C 0.566 3.434 7 O -0.567 6.567 8 N -0.598 5.598 9 C 0.113 3.887 10 C -0.123 4.123 11 C 0.159 3.841 12 H 0.026 0.974 13 C -0.109 4.109 14 H 0.060 0.940 15 C -0.122 4.122 16 C 0.182 3.818 17 N -0.615 5.615 18 C -0.228 4.228 19 H 0.089 0.911 20 C -0.071 4.071 21 N -0.955 5.955 22 Si 0.974 3.026 23 H -0.290 1.290 24 H -0.299 1.299 25 H -0.264 1.264 26 C 0.135 3.865 27 C 0.341 3.659 28 O -0.490 6.490 29 N -0.532 5.532 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.111 0.889 33 H 0.189 0.811 34 H 0.173 0.827 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.005 0.995 42 H 0.015 0.985 43 H 0.244 0.756 44 H 0.090 0.910 45 H 0.086 0.914 46 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.614 4.771 -14.322 23.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.021 3.979 3 C -0.191 4.191 4 C -0.050 4.050 5 C -0.224 4.224 6 C 0.355 3.645 7 O -0.446 6.446 8 N -0.329 5.329 9 C -0.009 4.009 10 C -0.162 4.162 11 C 0.052 3.948 12 H 0.044 0.956 13 C -0.130 4.130 14 H 0.079 0.921 15 C -0.160 4.160 16 C 0.057 3.943 17 N -0.340 5.340 18 C -0.357 4.357 19 H 0.107 0.893 20 C -0.264 4.264 21 N -0.604 5.604 22 Si 0.802 3.198 23 H -0.217 1.217 24 H -0.226 1.226 25 H -0.189 1.189 26 C 0.013 3.987 27 C 0.162 3.838 28 O -0.299 6.299 29 N -0.252 5.252 30 H 0.113 0.887 31 H 0.091 0.909 32 H 0.129 0.871 33 H 0.207 0.793 34 H 0.190 0.810 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.098 0.902 38 H 0.067 0.933 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.023 0.977 42 H 0.033 0.967 43 H 0.053 0.947 44 H 0.108 0.892 45 H 0.104 0.896 46 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -17.665 3.703 -15.118 23.544 hybrid contribution 1.085 0.118 1.908 2.198 sum -16.580 3.820 -13.210 21.541 Atomic orbital electron populations 1.20953 0.85724 1.05125 1.04555 1.21983 0.98729 0.87033 0.90173 1.22351 0.93794 1.00693 1.02236 1.22072 0.95345 0.96552 0.91061 1.20897 0.93753 0.95843 1.11905 1.18230 0.86904 0.78345 0.81068 1.90782 1.71588 1.43365 1.38900 1.48272 1.07467 1.46436 1.30741 1.22093 0.97318 0.95002 0.86479 1.21772 0.95934 1.01886 0.96637 1.20734 0.92671 0.95305 0.86099 0.95649 1.22401 0.96628 0.98814 0.95115 0.92114 1.22590 0.95329 1.02112 0.96009 1.21292 0.86697 0.95246 0.91026 1.44492 1.15719 1.72139 1.01606 1.19419 1.00463 1.32940 0.82921 0.89278 1.25630 0.97066 1.02158 1.01498 1.70169 1.11688 1.50308 1.28263 0.85140 0.76823 0.78012 0.79782 1.21703 1.22620 1.18856 1.21532 0.78621 1.02884 0.95616 1.19216 0.86798 0.84718 0.93054 1.84718 1.76894 1.33117 1.35170 1.67130 1.08831 1.32390 1.16875 0.88742 0.90870 0.87082 0.79342 0.80977 0.88513 0.87905 0.90199 0.93265 0.90110 0.90589 0.97658 0.96697 0.94666 0.89169 0.89610 0.72517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.92 10.16 71.24 0.72 -0.19 16 2 C 0.16 2.54 6.78 42.58 0.29 2.83 16 3 C -0.17 -1.96 9.71 22.32 0.22 -1.75 16 4 C -0.02 -0.38 7.58 22.72 0.17 -0.21 16 5 C -0.22 -5.18 4.82 -19.91 -0.10 -5.28 16 6 C 0.57 16.29 6.87 86.69 0.60 16.88 16 7 O -0.57 -20.92 16.12 -0.55 -0.01 -20.93 16 8 N -0.60 -15.40 3.00 -821.77 -2.46 -17.87 16 9 C 0.11 2.41 5.27 86.69 0.46 2.87 16 10 C -0.12 -3.69 5.48 30.34 0.17 -3.52 16 11 C 0.16 5.86 2.55 45.31 0.12 5.98 16 12 H 0.03 0.94 7.89 -2.39 -0.02 0.92 16 13 C -0.11 -3.66 2.85 -10.09 -0.03 -3.69 16 14 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 15 C -0.12 -4.35 6.54 31.63 0.21 -4.15 16 16 C 0.18 8.88 5.45 86.85 0.47 9.35 16 17 N -0.62 -30.08 3.35 -671.03 -2.25 -32.34 16 18 C -0.23 -12.17 9.88 84.03 0.83 -11.34 16 19 H 0.09 4.42 7.21 -2.92 -0.02 4.40 16 20 C -0.07 -3.96 5.49 84.87 0.47 -3.49 16 21 N -0.95 -57.21 10.44 21.65 0.23 -56.98 16 22 Si 0.97 44.78 29.55 68.60 2.03 46.81 16 23 H -0.29 -13.22 7.11 99.48 0.71 -12.52 16 24 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 25 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 26 C 0.14 3.76 5.94 85.90 0.51 4.27 16 27 C 0.34 9.04 7.76 85.13 0.66 9.70 16 28 O -0.49 -13.74 12.75 -83.74 -1.07 -14.80 16 29 N -0.53 -12.72 10.28 -296.05 -3.04 -15.77 16 30 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.11 0.30 8.07 -2.39 -0.02 0.28 16 33 H 0.19 0.52 8.06 -2.91 -0.02 0.49 16 34 H 0.17 1.67 7.37 -2.91 -0.02 1.65 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.10 1.79 4.83 -2.39 -0.01 1.78 16 37 H 0.08 2.37 7.62 -2.39 -0.02 2.35 16 38 H 0.05 1.63 8.13 -2.39 -0.02 1.62 16 39 H 0.08 2.56 8.11 -2.39 -0.02 2.54 16 40 H 0.08 2.50 8.14 -2.38 -0.02 2.48 16 41 H 0.01 0.28 7.77 -2.39 -0.02 0.26 16 42 H 0.01 0.82 7.21 -2.39 -0.02 0.81 16 43 H 0.24 14.35 8.31 -92.70 -0.77 13.58 16 44 H 0.09 2.21 8.07 -2.39 -0.02 2.19 16 45 H 0.09 2.54 7.03 -2.39 -0.02 2.53 16 46 H 0.41 8.24 9.06 -74.06 -0.67 7.57 16 Total: -1.00 -78.89 365.42 -0.49 -79.38 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: 0.34 Total: 14.23 kcal Atomic # 6 Polarization: 12.51 SS G_CDS: 5.76 Total: 18.27 kcal Atomic # 7 Polarization: -115.42 SS G_CDS: -7.53 Total: -122.95 kcal Atomic # 8 Polarization: -34.66 SS G_CDS: -1.08 Total: -35.73 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -78.89 -0.49 -79.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036828522.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.265 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds