Wall clock time and date at job start Tue Mar 31 2020 17:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37998 * 120.81918 * 2 1 4 4 C 1.39126 * 119.25912 * 179.73322 * 3 2 1 5 5 O 1.35508 * 119.52332 * 180.25390 * 4 3 2 6 6 N 1.32439 * 120.95449 * 0.55815 * 4 3 2 7 7 C 1.31636 * 121.79526 * 359.71512 * 6 4 3 8 8 C 1.39566 * 120.63030 * 0.02562 * 7 6 4 9 9 C 1.47605 * 120.50426 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00494 * 125.81611 * 9 8 7 11 11 N 1.34783 * 120.00131 * 305.81904 * 9 8 7 12 12 C 1.46947 * 120.44610 * 183.52164 * 11 9 8 13 13 C 1.53593 * 108.52929 * 125.75018 * 12 11 9 14 14 H 1.08994 * 110.59810 * 172.16325 * 13 12 11 15 15 C 1.53367 * 108.68805 * 294.36426 * 13 12 11 16 16 C 1.53009 * 109.27050 * 60.29247 * 15 13 12 17 17 C 1.53014 * 109.79618 * 60.57153 * 16 15 13 18 18 C 1.53372 * 109.25484 * 299.42237 * 17 16 15 19 19 H 1.09000 * 111.08730 * 177.83524 * 18 17 16 20 20 C 1.46948 * 120.44106 * 3.25077 * 11 9 8 21 21 N 1.47567 * 107.98836 * 56.37393 * 18 17 16 22 22 C 1.36930 * 121.60887 * 122.28114 * 21 18 17 23 23 H 1.08007 * 119.99910 * 144.34901 * 22 21 18 24 24 C 1.38812 * 120.00208 * 324.34583 * 22 21 18 25 25 N 1.31620 * 119.99776 * 4.10513 * 24 22 21 26 26 Si 1.86807 * 120.00226 * 184.10391 * 24 22 21 27 27 H 1.48499 * 109.46720 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47118 * 119.99915 * 26 24 22 29 29 H 1.48497 * 109.46753 * 240.00226 * 26 24 22 30 30 H 1.08997 * 109.47009 * 264.71280 * 1 2 3 31 31 H 1.09007 * 109.47164 * 144.71063 * 1 2 3 32 32 H 1.08997 * 109.46778 * 24.71502 * 1 2 3 33 33 H 1.07993 * 120.36880 * 359.97438 * 3 2 1 34 34 H 0.96695 * 114.00086 * 270.29739 * 5 4 3 35 35 H 1.08003 * 119.68366 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.62597 * 245.46771 * 12 11 9 37 37 H 1.09004 * 109.62317 * 6.04272 * 12 11 9 38 38 H 1.09006 * 109.50123 * 180.23274 * 15 13 12 39 39 H 1.08997 * 109.50572 * 300.34753 * 15 13 12 40 40 H 1.08997 * 109.41696 * 300.46802 * 16 15 13 41 41 H 1.09005 * 109.41552 * 180.66556 * 16 15 13 42 42 H 1.08992 * 109.50454 * 179.48560 * 17 16 15 43 43 H 1.09003 * 109.54108 * 59.37282 * 17 16 15 44 44 H 1.08998 * 109.62552 * 353.95353 * 20 11 9 45 45 H 1.09004 * 109.62595 * 114.51785 * 20 11 9 46 46 H 0.97007 * 119.99570 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1472 0.0057 5 8 4.3043 2.3077 0.0109 6 7 4.2548 -0.0066 -0.0001 7 6 3.6205 -1.1600 -0.0057 8 6 2.2255 -1.2044 -0.0063 9 6 1.5171 -2.4993 -0.0121 10 8 0.6845 -2.7406 0.8404 11 7 1.7932 -3.4144 -0.9624 12 6 1.0401 -4.6747 -1.0237 13 6 0.4583 -4.8273 -2.4370 14 1 0.0102 -5.8129 -2.5628 15 6 -0.5756 -3.7179 -2.6653 16 6 0.1081 -2.3554 -2.5328 17 6 1.2146 -2.2267 -3.5818 18 6 2.2557 -3.3302 -3.3568 19 1 3.0398 -3.2897 -4.1129 20 6 2.8475 -3.1625 -1.9546 21 7 1.5586 -4.6301 -3.4005 22 6 1.9156 -5.6063 -4.2919 23 1 1.8665 -6.6458 -4.0028 24 6 2.3407 -5.2600 -5.5671 25 7 2.4780 -3.9923 -5.8934 26 14 2.7181 -6.5932 -6.8202 27 1 2.4868 -7.9266 -6.2089 28 1 1.8317 -6.4285 -8.0002 29 1 4.1362 -6.4841 -7.2470 30 1 -0.3633 -0.0947 1.0233 31 1 -0.3634 -0.8389 -0.5937 32 1 -0.3633 0.9335 -0.4297 33 1 1.6936 2.1314 -0.0004 34 1 4.5071 2.6488 -0.8709 35 1 4.1849 -2.0808 -0.0098 36 1 1.7066 -5.5102 -0.8099 37 1 0.2300 -4.6529 -0.2947 38 1 -1.0005 -3.8163 -3.6643 39 1 -1.3687 -3.8009 -1.9222 40 1 0.5405 -2.2623 -1.5366 41 1 -0.6273 -1.5649 -2.6829 42 1 1.6921 -1.2513 -3.4892 43 1 0.7856 -2.3288 -4.5787 44 1 3.2253 -2.1468 -1.8375 45 1 3.6594 -3.8763 -1.8153 46 1 2.7747 -3.7504 -6.7848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039910503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:33 Heat of formation + Delta-G solvation = 17.283487 kcal Electronic energy + Delta-G solvation = -30844.903693 eV Core-core repulsion = 26929.655479 eV Total energy + Delta-G solvation = -3915.248214 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.34526 -39.98350 -37.91338 -37.01787 -34.23832 -33.85025 -32.91954 -32.05053 -30.56703 -30.31050 -28.11816 -26.95232 -25.61461 -24.45519 -23.39636 -22.46800 -21.61789 -21.19287 -19.91186 -18.52516 -18.38130 -17.60280 -17.22812 -16.25046 -16.04172 -15.67098 -14.86036 -14.77197 -14.55160 -14.07780 -13.98157 -13.72495 -13.51464 -13.23294 -13.06394 -12.93424 -12.82942 -12.66611 -12.44071 -12.23574 -12.01412 -11.93441 -11.75255 -11.40445 -11.09062 -11.00264 -10.78367 -10.29844 -10.27519 -10.20534 -10.08826 -9.95051 -9.65892 -9.60598 -9.43805 -9.32489 -8.94812 -8.54800 -7.95198 -6.58665 -5.89668 -3.45395 0.62858 1.05665 2.75747 3.16801 3.29447 3.38346 3.38862 3.47301 3.64558 4.36623 4.43337 4.52365 4.63460 4.89992 5.10037 5.14000 5.26875 5.29344 5.50184 5.57401 5.64725 5.67492 5.68446 5.75012 5.80450 5.86569 5.88763 5.96201 6.08676 6.16069 6.21495 6.29282 6.36142 6.40564 6.44278 6.54288 6.68390 6.80634 6.93260 7.01945 7.04992 7.28280 7.45823 7.55351 7.67776 7.71982 7.79826 8.35658 8.38458 9.09105 9.66047 10.30964 11.14008 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.004374 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.338746 B = 6400.203814 C = 7133.867339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.022 3.978 3 C -0.193 4.193 4 C 0.325 3.675 5 O -0.483 6.483 6 N -0.507 5.507 7 C 0.163 3.837 8 C -0.184 4.184 9 C 0.565 3.435 10 O -0.546 6.546 11 N -0.580 5.580 12 C 0.100 3.900 13 C 0.152 3.848 14 H 0.080 0.920 15 C -0.121 4.121 16 C -0.142 4.142 17 C -0.110 4.110 18 C 0.172 3.828 19 H 0.133 0.867 20 C 0.076 3.924 21 N -0.580 5.580 22 C -0.251 4.251 23 H 0.067 0.933 24 C 0.013 3.987 25 N -0.900 5.900 26 Si 0.902 3.098 27 H -0.278 1.278 28 H -0.289 1.289 29 H -0.290 1.290 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.145 0.855 34 H 0.403 0.597 35 H 0.167 0.833 36 H 0.065 0.935 37 H 0.083 0.917 38 H 0.058 0.942 39 H 0.042 0.958 40 H 0.080 0.920 41 H 0.030 0.970 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.970 8.832 8.295 12.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.014 3.986 3 C -0.214 4.214 4 C 0.147 3.853 5 O -0.290 6.290 6 N -0.226 5.226 7 C 0.005 3.995 8 C -0.189 4.189 9 C 0.353 3.647 10 O -0.425 6.425 11 N -0.311 5.311 12 C -0.023 4.023 13 C 0.044 3.956 14 H 0.098 0.902 15 C -0.160 4.160 16 C -0.180 4.180 17 C -0.149 4.149 18 C 0.065 3.935 19 H 0.150 0.850 20 C -0.048 4.048 21 N -0.301 5.301 22 C -0.380 4.380 23 H 0.084 0.916 24 C -0.186 4.186 25 N -0.544 5.544 26 Si 0.732 3.268 27 H -0.203 1.203 28 H -0.216 1.216 29 H -0.217 1.217 30 H 0.105 0.895 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.163 0.837 34 H 0.261 0.739 35 H 0.184 0.816 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.097 0.903 41 H 0.049 0.951 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.085 0.915 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -0.455 8.738 9.138 12.652 hybrid contribution -0.537 -0.408 -1.383 1.539 sum -0.991 8.330 7.755 11.424 Atomic orbital electron populations 1.21033 0.89290 1.03850 1.04022 1.20183 0.97176 0.90699 0.90535 1.21899 0.93748 0.99313 1.06426 1.19295 0.87044 0.85208 0.93780 1.84708 1.76010 1.34143 1.34175 1.67174 1.41866 0.98162 1.15381 1.22726 0.90082 0.95283 0.91427 1.20921 0.95497 0.94730 1.07744 1.17688 0.82414 0.83324 0.81303 1.90768 1.34817 1.79103 1.37822 1.48166 1.36263 1.17994 1.28667 1.22313 0.95906 0.84140 0.99973 1.21261 0.89160 0.97008 0.88193 0.90229 1.21902 0.97396 0.96254 1.00487 1.22226 0.97962 0.96084 1.01697 1.21781 0.96829 0.97068 0.99196 1.21321 0.95679 0.84815 0.91709 0.85026 1.22888 0.89710 1.00177 0.92010 1.44315 1.33071 1.13787 1.38924 1.19165 1.40252 0.87871 0.90734 0.91583 1.25297 1.00483 0.95977 0.96820 1.69745 1.50116 1.14846 1.19673 0.86222 0.77441 0.81467 0.81660 1.20253 1.21554 1.21678 0.89490 0.89740 0.90887 0.83730 0.73915 0.81644 0.91691 0.89911 0.92367 0.93942 0.90268 0.95134 0.94996 0.91120 0.91089 0.91460 0.93424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.53 9.12 36.01 0.33 -1.20 16 2 C 0.02 0.30 5.94 -103.95 -0.62 -0.32 16 3 C -0.19 -2.25 9.71 -39.34 -0.38 -2.64 16 4 C 0.32 4.13 7.74 -16.96 -0.13 4.00 16 5 O -0.48 -5.10 13.55 -18.22 -0.25 -5.34 16 6 N -0.51 -7.28 10.37 -12.96 -0.13 -7.42 16 7 C 0.16 2.31 8.61 -17.14 -0.15 2.16 16 8 C -0.18 -2.75 4.72 -104.83 -0.49 -3.24 16 9 C 0.56 9.51 3.98 -12.44 -0.05 9.46 16 10 O -0.55 -10.34 15.68 5.29 0.08 -10.26 16 11 N -0.58 -9.89 1.66 -173.73 -0.29 -10.18 16 12 C 0.10 1.75 5.88 -3.49 -0.02 1.73 16 13 C 0.15 2.93 3.62 -66.84 -0.24 2.68 16 14 H 0.08 1.51 8.01 -51.93 -0.42 1.09 16 15 C -0.12 -2.25 5.58 -26.54 -0.15 -2.40 16 16 C -0.14 -2.57 4.66 -26.72 -0.12 -2.69 16 17 C -0.11 -2.19 5.52 -26.53 -0.15 -2.34 16 18 C 0.17 3.59 2.64 -67.09 -0.18 3.41 16 19 H 0.13 3.18 5.71 -51.93 -0.30 2.88 16 20 C 0.08 1.33 4.95 -3.73 -0.02 1.31 16 21 N -0.58 -12.90 2.54 -155.70 -0.40 -13.29 16 22 C -0.25 -6.23 9.70 -15.06 -0.15 -6.37 16 23 H 0.07 1.64 7.83 -52.48 -0.41 1.22 16 24 C 0.01 0.33 5.37 -17.43 -0.09 0.24 16 25 N -0.90 -23.41 10.39 55.49 0.58 -22.83 16 26 Si 0.90 20.28 29.56 -169.99 -5.02 15.26 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 29 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 30 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.19 5.03 -51.93 -0.26 0.93 16 32 H 0.07 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.40 2.24 9.06 45.56 0.41 2.66 16 35 H 0.17 2.12 7.40 -52.48 -0.39 1.73 16 36 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.08 1.41 7.00 -51.93 -0.36 1.05 16 38 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 39 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 1.37 1.38 -52.45 -0.07 1.30 16 41 H 0.03 0.52 7.90 -51.93 -0.41 0.11 16 42 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 1.64 7.99 -51.93 -0.41 1.22 16 44 H 0.07 1.14 4.74 -51.93 -0.25 0.89 16 45 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 46 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 348.12 15.07 5.25 5.25 Total: -1.00 -29.36 348.12 -8.18 -37.54 By element: Atomic # 1 Polarization: 12.86 SS G_CDS: -5.38 Total: 7.48 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -2.61 Total: 3.79 kcal Atomic # 7 Polarization: -53.48 SS G_CDS: -0.24 Total: -53.72 kcal Atomic # 8 Polarization: -15.44 SS G_CDS: -0.16 Total: -15.60 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.36 -8.18 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039910503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.822 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds