Wall clock time and date at job start Tue Mar 31 2020 17:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37998 * 120.81918 * 2 1 4 4 C 1.39126 * 119.25912 * 179.73322 * 3 2 1 5 5 O 1.35508 * 119.52332 * 180.25390 * 4 3 2 6 6 N 1.32439 * 120.95449 * 0.55815 * 4 3 2 7 7 C 1.31636 * 121.79526 * 359.71512 * 6 4 3 8 8 C 1.39566 * 120.63030 * 0.02562 * 7 6 4 9 9 C 1.47605 * 120.50426 * 180.02562 * 8 7 6 10 10 O 1.21581 * 120.00494 * 125.81611 * 9 8 7 11 11 N 1.34783 * 120.00131 * 305.81904 * 9 8 7 12 12 C 1.46947 * 120.44610 * 183.52164 * 11 9 8 13 13 C 1.53593 * 108.52929 * 125.75018 * 12 11 9 14 14 H 1.08994 * 110.59810 * 172.16325 * 13 12 11 15 15 C 1.53367 * 108.68805 * 294.36426 * 13 12 11 16 16 C 1.53009 * 109.27050 * 60.29247 * 15 13 12 17 17 C 1.53014 * 109.79618 * 60.57153 * 16 15 13 18 18 C 1.53372 * 109.25484 * 299.42237 * 17 16 15 19 19 H 1.09000 * 111.08730 * 177.83524 * 18 17 16 20 20 C 1.46948 * 120.44106 * 3.25077 * 11 9 8 21 21 N 1.47567 * 107.98836 * 56.37393 * 18 17 16 22 22 C 1.36930 * 121.60887 * 122.28114 * 21 18 17 23 23 H 1.08007 * 119.99910 * 144.34901 * 22 21 18 24 24 C 1.38812 * 120.00208 * 324.34583 * 22 21 18 25 25 N 1.31620 * 119.99776 * 4.10513 * 24 22 21 26 26 Si 1.86807 * 120.00226 * 184.10391 * 24 22 21 27 27 H 1.48499 * 109.46720 * 359.97438 * 26 24 22 28 28 H 1.48502 * 109.47118 * 119.99915 * 26 24 22 29 29 H 1.48497 * 109.46753 * 240.00226 * 26 24 22 30 30 H 1.08997 * 109.47009 * 264.71280 * 1 2 3 31 31 H 1.09007 * 109.47164 * 144.71063 * 1 2 3 32 32 H 1.08997 * 109.46778 * 24.71502 * 1 2 3 33 33 H 1.07993 * 120.36880 * 359.97438 * 3 2 1 34 34 H 0.96695 * 114.00086 * 270.29739 * 5 4 3 35 35 H 1.08003 * 119.68366 * 180.02562 * 7 6 4 36 36 H 1.08994 * 109.62597 * 245.46771 * 12 11 9 37 37 H 1.09004 * 109.62317 * 6.04272 * 12 11 9 38 38 H 1.09006 * 109.50123 * 180.23274 * 15 13 12 39 39 H 1.08997 * 109.50572 * 300.34753 * 15 13 12 40 40 H 1.08997 * 109.41696 * 300.46802 * 16 15 13 41 41 H 1.09005 * 109.41552 * 180.66556 * 16 15 13 42 42 H 1.08992 * 109.50454 * 179.48560 * 17 16 15 43 43 H 1.09003 * 109.54108 * 59.37282 * 17 16 15 44 44 H 1.08998 * 109.62552 * 353.95353 * 20 11 9 45 45 H 1.09004 * 109.62595 * 114.51785 * 20 11 9 46 46 H 0.97007 * 119.99570 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1472 0.0057 5 8 4.3043 2.3077 0.0109 6 7 4.2548 -0.0066 -0.0001 7 6 3.6205 -1.1600 -0.0057 8 6 2.2255 -1.2044 -0.0063 9 6 1.5171 -2.4993 -0.0121 10 8 0.6845 -2.7406 0.8404 11 7 1.7932 -3.4144 -0.9624 12 6 1.0401 -4.6747 -1.0237 13 6 0.4583 -4.8273 -2.4370 14 1 0.0102 -5.8129 -2.5628 15 6 -0.5756 -3.7179 -2.6653 16 6 0.1081 -2.3554 -2.5328 17 6 1.2146 -2.2267 -3.5818 18 6 2.2557 -3.3302 -3.3568 19 1 3.0398 -3.2897 -4.1129 20 6 2.8475 -3.1625 -1.9546 21 7 1.5586 -4.6301 -3.4005 22 6 1.9156 -5.6063 -4.2919 23 1 1.8665 -6.6458 -4.0028 24 6 2.3407 -5.2600 -5.5671 25 7 2.4780 -3.9923 -5.8934 26 14 2.7181 -6.5932 -6.8202 27 1 2.4868 -7.9266 -6.2089 28 1 1.8317 -6.4285 -8.0002 29 1 4.1362 -6.4841 -7.2470 30 1 -0.3633 -0.0947 1.0233 31 1 -0.3634 -0.8389 -0.5937 32 1 -0.3633 0.9335 -0.4297 33 1 1.6936 2.1314 -0.0004 34 1 4.5071 2.6488 -0.8709 35 1 4.1849 -2.0808 -0.0098 36 1 1.7066 -5.5102 -0.8099 37 1 0.2300 -4.6529 -0.2947 38 1 -1.0005 -3.8163 -3.6643 39 1 -1.3687 -3.8009 -1.9222 40 1 0.5405 -2.2623 -1.5366 41 1 -0.6273 -1.5649 -2.6829 42 1 1.6921 -1.2513 -3.4892 43 1 0.7856 -2.3288 -4.5787 44 1 3.2253 -2.1468 -1.8375 45 1 3.6594 -3.8763 -1.8153 46 1 2.7747 -3.7504 -6.7848 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039910503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:47:32 Heat of formation + Delta-G solvation = -2.503722 kcal Electronic energy + Delta-G solvation = -30845.761731 eV Core-core repulsion = 26929.655479 eV Total energy + Delta-G solvation = -3916.106252 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.60224 -41.14857 -39.28683 -38.00221 -35.68182 -35.02566 -34.52194 -33.56790 -32.16178 -31.58160 -29.09165 -28.51108 -27.09462 -25.86734 -24.80212 -23.54528 -23.14677 -22.69743 -21.20950 -20.02562 -19.41444 -18.97994 -18.40652 -17.62468 -17.29521 -16.91938 -16.47636 -16.26734 -15.68932 -15.58044 -15.23795 -15.11861 -14.88592 -14.58875 -14.50498 -14.22559 -13.99217 -13.95239 -13.62742 -13.56491 -13.41867 -13.08434 -13.05742 -12.86263 -12.72721 -12.63536 -12.39053 -12.04277 -11.99044 -11.72827 -11.66314 -11.34887 -11.10350 -11.05011 -10.64256 -10.50406 -10.39053 -9.97359 -9.45555 -8.35132 -7.79069 -5.36765 -0.38756 0.07268 1.47083 1.49786 1.52670 1.59579 1.92940 2.43687 2.52912 2.66390 3.33547 3.34117 3.50847 3.53943 3.59314 3.94790 4.11154 4.16972 4.19943 4.25076 4.30375 4.34860 4.36601 4.47585 4.59581 4.65803 4.69261 4.69653 4.75385 4.84604 4.85555 4.90361 4.97922 5.06273 5.14748 5.19593 5.25867 5.36025 5.39538 5.46891 5.54392 5.71085 5.78935 5.89551 6.38275 6.51470 6.54922 6.78504 7.02173 7.22154 7.84531 8.46016 9.20686 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.016444 B = 0.004374 C = 0.003924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.338746 B = 6400.203814 C = 7133.867339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.017 3.983 3 C -0.183 4.183 4 C 0.326 3.674 5 O -0.486 6.486 6 N -0.528 5.528 7 C 0.160 3.840 8 C -0.206 4.206 9 C 0.571 3.429 10 O -0.566 6.566 11 N -0.581 5.581 12 C 0.108 3.892 13 C 0.147 3.853 14 H 0.079 0.921 15 C -0.118 4.118 16 C -0.137 4.137 17 C -0.099 4.099 18 C 0.169 3.831 19 H 0.099 0.901 20 C 0.091 3.909 21 N -0.594 5.594 22 C -0.257 4.257 23 H 0.064 0.936 24 C -0.032 4.032 25 N -0.919 5.919 26 Si 0.958 3.042 27 H -0.271 1.271 28 H -0.297 1.297 29 H -0.293 1.293 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.101 0.899 33 H 0.177 0.823 34 H 0.425 0.575 35 H 0.172 0.828 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.034 0.966 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.043 0.957 43 H 0.032 0.968 44 H 0.088 0.912 45 H 0.068 0.932 46 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.149 10.250 9.621 14.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 C -0.203 4.203 4 C 0.148 3.852 5 O -0.297 6.297 6 N -0.247 5.247 7 C 0.002 3.998 8 C -0.211 4.211 9 C 0.361 3.639 10 O -0.447 6.447 11 N -0.312 5.312 12 C -0.016 4.016 13 C 0.040 3.960 14 H 0.097 0.903 15 C -0.157 4.157 16 C -0.174 4.174 17 C -0.138 4.138 18 C 0.062 3.938 19 H 0.117 0.883 20 C -0.033 4.033 21 N -0.316 5.316 22 C -0.387 4.387 23 H 0.081 0.919 24 C -0.228 4.228 25 N -0.565 5.565 26 Si 0.787 3.213 27 H -0.196 1.196 28 H -0.224 1.224 29 H -0.220 1.220 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.120 0.880 33 H 0.195 0.805 34 H 0.287 0.713 35 H 0.189 0.811 36 H 0.087 0.913 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.051 0.949 44 H 0.106 0.894 45 H 0.086 0.914 46 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -0.632 10.168 10.471 14.609 hybrid contribution -0.465 -0.760 -1.760 1.972 sum -1.097 9.407 8.711 12.868 Atomic orbital electron populations 1.21052 0.88460 1.04509 1.04010 1.20423 0.97879 0.90668 0.90103 1.22154 0.93304 1.00004 1.04885 1.19543 0.87717 0.85311 0.92601 1.84665 1.75761 1.33116 1.36166 1.67204 1.42453 0.98726 1.16323 1.22795 0.89892 0.95718 0.91380 1.20840 0.95846 0.94252 1.10171 1.17911 0.81876 0.83616 0.80493 1.90754 1.35850 1.79573 1.38473 1.48136 1.36177 1.18078 1.28796 1.22169 0.96224 0.84634 0.98565 1.21382 0.88706 0.97333 0.88556 0.90266 1.21848 0.97724 0.96368 0.99741 1.22208 0.97540 0.96102 1.01581 1.21613 0.97154 0.97333 0.97689 1.21162 0.95093 0.84643 0.92871 0.88325 1.22615 0.89430 1.01285 0.89926 1.44464 1.34296 1.13697 1.39132 1.19375 1.39574 0.88440 0.91304 0.91860 1.25850 1.01295 0.97431 0.98237 1.69924 1.51160 1.15979 1.19387 0.85355 0.76604 0.79870 0.79457 1.19559 1.22417 1.22012 0.89270 0.91799 0.87993 0.80522 0.71311 0.81072 0.91331 0.89106 0.94675 0.91877 0.88950 0.93997 0.93867 0.94931 0.89351 0.91404 0.94116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.66 9.12 71.24 0.65 -2.01 16 2 C 0.02 0.42 5.94 -19.43 -0.12 0.30 16 3 C -0.18 -3.63 9.71 22.43 0.22 -3.41 16 4 C 0.33 7.37 7.74 84.81 0.66 8.03 16 5 O -0.49 -8.73 13.55 -88.10 -1.19 -9.92 16 6 N -0.53 -14.11 10.37 -307.78 -3.19 -17.30 16 7 C 0.16 4.28 8.61 85.04 0.73 5.02 16 8 C -0.21 -5.77 4.72 -20.00 -0.09 -5.86 16 9 C 0.57 18.34 3.98 86.71 0.34 18.69 16 10 O -0.57 -20.51 15.68 -3.97 -0.06 -20.58 16 11 N -0.58 -19.14 1.66 -821.81 -1.36 -20.50 16 12 C 0.11 3.64 5.88 86.49 0.51 4.15 16 13 C 0.15 5.64 3.62 45.11 0.16 5.81 16 14 H 0.08 3.00 8.01 -2.39 -0.02 2.98 16 15 C -0.12 -4.32 5.58 30.72 0.17 -4.15 16 16 C -0.14 -4.82 4.66 30.60 0.14 -4.67 16 17 C -0.10 -3.96 5.52 30.72 0.17 -3.79 16 18 C 0.17 7.15 2.64 44.95 0.12 7.27 16 19 H 0.10 4.91 5.71 -2.39 -0.01 4.89 16 20 C 0.09 3.13 4.95 86.34 0.43 3.56 16 21 N -0.59 -26.73 2.54 -646.53 -1.64 -28.37 16 22 C -0.26 -12.94 9.70 84.03 0.82 -12.12 16 23 H 0.06 3.16 7.83 -2.91 -0.02 3.14 16 24 C -0.03 -1.63 5.37 84.86 0.46 -1.17 16 25 N -0.92 -49.24 10.39 21.65 0.22 -49.01 16 26 Si 0.96 42.44 29.56 68.60 2.03 44.47 16 27 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 28 H -0.30 -13.45 7.11 99.48 0.71 -12.75 16 29 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 30 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 31 H 0.06 1.65 5.03 -2.38 -0.01 1.64 16 32 H 0.10 1.54 8.07 -2.39 -0.02 1.53 16 33 H 0.18 2.31 8.06 -2.91 -0.02 2.28 16 34 H 0.42 3.35 9.06 -74.06 -0.67 2.68 16 35 H 0.17 4.18 7.40 -2.91 -0.02 4.16 16 36 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.09 2.95 7.00 -2.38 -0.02 2.94 16 38 H 0.03 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 40 H 0.09 3.07 1.38 -3.41 0.00 3.06 16 41 H 0.04 1.38 7.90 -2.38 -0.02 1.36 16 42 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 43 H 0.03 1.54 7.99 -2.39 -0.02 1.52 16 44 H 0.09 2.74 4.74 -2.39 -0.01 2.72 16 45 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 46 H 0.25 13.13 8.31 -92.70 -0.77 12.36 16 Total: -1.00 -63.39 348.12 0.52 -62.86 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.36 Total: 22.73 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: 5.36 Total: 15.62 kcal Atomic # 7 Polarization: -109.21 SS G_CDS: -5.97 Total: -115.19 kcal Atomic # 8 Polarization: -29.24 SS G_CDS: -1.26 Total: -30.50 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.47 kcal Total: -63.39 0.52 -62.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039910503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.361 kcal (2) G-P(sol) polarization free energy of solvation -63.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds