Wall clock time and date at job start Tue Mar 31 2020 16:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.41104 * 2 1 4 4 C 1.38338 * 119.45601 * 179.74218 * 3 2 1 5 5 C 1.39978 * 118.35254 * 0.47592 * 4 3 2 6 6 C 1.47527 * 120.59577 * 179.80177 * 5 4 3 7 7 O 1.21592 * 119.99437 * 150.04166 * 6 5 4 8 8 N 1.34768 * 120.00013 * 330.03591 * 6 5 4 9 9 C 1.46950 * 120.44239 * 175.13969 * 8 6 5 10 10 C 1.53584 * 108.53455 * 125.77950 * 9 8 6 11 11 H 1.08998 * 110.60432 * 172.16273 * 10 9 8 12 12 C 1.53374 * 108.68883 * 294.35984 * 10 9 8 13 13 C 1.53011 * 109.27172 * 60.29932 * 12 10 9 14 14 C 1.53019 * 109.79702 * 60.56451 * 13 12 10 15 15 C 1.53374 * 109.25232 * 299.42286 * 14 13 12 16 16 H 1.08998 * 111.08013 * 177.83161 * 15 14 13 17 17 C 1.46941 * 120.44616 * 355.16660 * 8 6 5 18 18 N 1.47569 * 107.98235 * 56.38434 * 15 14 13 19 19 C 1.36937 * 121.60944 * 122.27739 * 18 15 14 20 20 H 1.07997 * 120.00209 * 28.01530 * 19 18 15 21 21 C 1.38814 * 119.99303 * 208.01403 * 19 18 15 22 22 N 1.31615 * 120.00436 * 17.86408 * 21 19 18 23 23 Si 1.86812 * 119.99576 * 197.86200 * 21 19 18 24 24 H 1.48501 * 109.47112 * 89.99993 * 23 21 19 25 25 H 1.48500 * 109.46913 * 210.00222 * 23 21 19 26 26 H 1.48500 * 109.46902 * 329.99808 * 23 21 19 27 27 C 1.40278 * 118.80714 * 359.52704 * 5 4 3 28 28 O 1.35427 * 119.80145 * 180.25000 * 27 5 4 29 29 N 1.31883 * 119.40362 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47374 * 270.02595 * 1 2 3 31 31 H 1.09006 * 109.46729 * 30.02389 * 1 2 3 32 32 H 1.08999 * 109.46896 * 150.02029 * 1 2 3 33 33 H 1.08004 * 120.26701 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.81771 * 180.25134 * 4 3 2 35 35 H 1.09008 * 109.62849 * 245.49616 * 9 8 6 36 36 H 1.09008 * 109.62422 * 6.06385 * 9 8 6 37 37 H 1.08999 * 109.50513 * 180.23823 * 12 10 9 38 38 H 1.08996 * 109.50454 * 300.32285 * 12 10 9 39 39 H 1.09000 * 109.41669 * 180.66291 * 13 12 10 40 40 H 1.08993 * 109.41758 * 300.53480 * 13 12 10 41 41 H 1.08999 * 109.50513 * 179.49134 * 14 13 12 42 42 H 1.09000 * 109.50707 * 59.35990 * 14 13 12 43 43 H 1.08993 * 109.62819 * 114.48649 * 17 8 6 44 44 H 1.09008 * 109.77672 * 354.00830 * 17 8 6 45 45 H 0.97004 * 119.99772 * 180.02562 * 22 21 19 46 46 H 0.96702 * 113.99899 * 90.00264 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2063 0.0054 5 6 4.2355 -0.0250 0.0005 6 6 5.7097 -0.0816 0.0015 7 8 6.2817 -1.0189 0.5238 8 7 6.4223 0.9056 -0.5764 9 6 7.8892 0.9144 -0.4889 10 6 8.4625 1.0079 -1.9106 11 1 9.5420 1.1559 -1.8799 12 6 8.1029 -0.2746 -2.6709 13 6 6.5804 -0.4128 -2.7365 14 6 5.9825 0.7868 -3.4748 15 6 6.3337 2.0732 -2.7171 16 1 5.9538 2.9516 -3.2389 17 6 5.7430 1.9878 -1.3019 18 7 7.8023 2.1400 -2.5889 19 6 8.5176 3.2015 -3.0753 20 1 8.0574 4.1759 -3.1460 21 6 9.8345 3.0250 -3.4773 22 7 10.2897 1.8158 -3.7281 23 14 10.9607 4.5040 -3.6624 24 1 11.6502 4.7656 -2.3734 25 1 11.9698 4.2288 -4.7166 26 1 10.1574 5.6931 -4.0444 27 6 3.4758 -1.2042 0.0005 28 8 4.0991 -2.4065 0.0009 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.1223 2.1343 0.0096 35 1 8.2160 1.7748 0.0951 36 1 8.2332 -0.0051 -0.0151 37 1 8.5076 -0.2241 -3.6817 38 1 8.5250 -1.1355 -2.1525 39 1 6.3223 -1.3297 -3.2662 40 1 6.1763 -0.4525 -1.7250 41 1 4.8991 0.6791 -3.5266 42 1 6.3928 0.8348 -4.4834 43 1 5.9006 2.9326 -0.7818 44 1 4.6752 1.7772 -1.3631 45 1 11.2100 1.6925 -4.0086 46 1 4.2798 -2.7555 0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001039934103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:46 Heat of formation + Delta-G solvation = 32.408418 kcal Electronic energy + Delta-G solvation = -30619.359324 eV Core-core repulsion = 26704.766976 eV Total energy + Delta-G solvation = -3914.592348 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.36417 -39.91656 -37.74792 -37.09821 -34.44857 -33.17551 -32.68266 -31.78280 -31.63827 -30.38835 -28.29956 -26.70366 -25.73082 -23.99015 -23.50492 -22.70151 -21.50844 -21.25515 -19.98866 -18.69429 -18.31637 -17.48078 -16.91240 -16.37595 -15.80497 -15.42760 -15.17042 -14.74447 -14.53183 -14.12557 -13.98110 -13.78954 -13.51386 -13.44311 -13.17038 -12.85355 -12.75866 -12.47866 -12.31219 -12.23540 -12.08333 -11.71890 -11.66062 -11.39028 -11.19149 -10.95141 -10.74467 -10.31890 -10.16778 -10.07840 -10.00331 -9.95114 -9.87581 -9.56391 -9.43108 -9.14440 -8.92998 -8.53909 -7.91176 -6.65004 -5.85572 -3.30274 0.53558 0.95710 2.87654 3.24728 3.33005 3.40454 3.41551 3.42274 3.70200 4.33250 4.41167 4.46376 4.62030 4.78940 5.07380 5.12354 5.18809 5.28504 5.29131 5.36684 5.59122 5.62065 5.66917 5.69754 5.77967 5.80877 5.87742 5.92821 5.99764 6.13192 6.23991 6.28565 6.43557 6.45765 6.50372 6.64843 6.73496 6.88409 6.95321 7.09214 7.15345 7.46018 7.50047 7.60043 7.70168 7.73594 7.82661 8.33262 8.43280 9.09388 9.71431 10.33484 11.20771 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003855 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.759549 B = 7262.190019 C = 7768.280073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.168 3.832 3 C -0.194 4.194 4 C -0.034 4.034 5 C -0.202 4.202 6 C 0.566 3.434 7 O -0.540 6.540 8 N -0.581 5.581 9 C 0.093 3.907 10 C 0.178 3.822 11 H 0.117 0.883 12 C -0.111 4.111 13 C -0.138 4.138 14 C -0.122 4.122 15 C 0.151 3.849 16 H 0.079 0.921 17 C 0.073 3.927 18 N -0.578 5.578 19 C -0.254 4.254 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.894 5.894 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.280 1.280 27 C 0.371 3.629 28 O -0.466 6.466 29 N -0.510 5.510 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.144 0.856 34 H 0.158 0.842 35 H 0.062 0.938 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.037 0.963 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.036 0.964 42 H 0.059 0.941 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.255 0.745 46 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.331 -0.672 8.391 18.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.030 3.970 3 C -0.214 4.214 4 C -0.060 4.060 5 C -0.209 4.209 6 C 0.355 3.645 7 O -0.419 6.419 8 N -0.313 5.313 9 C -0.030 4.030 10 C 0.071 3.929 11 H 0.134 0.866 12 C -0.150 4.150 13 C -0.176 4.176 14 C -0.162 4.162 15 C 0.043 3.957 16 H 0.097 0.903 17 C -0.051 4.051 18 N -0.299 5.299 19 C -0.383 4.383 20 H 0.085 0.915 21 C -0.193 4.193 22 N -0.537 5.537 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.205 1.205 27 C 0.191 3.809 28 O -0.273 6.273 29 N -0.231 5.231 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.162 0.838 34 H 0.175 0.825 35 H 0.080 0.920 36 H 0.100 0.900 37 H 0.090 0.910 38 H 0.056 0.944 39 H 0.049 0.951 40 H 0.097 0.903 41 H 0.055 0.945 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.065 0.935 46 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges -16.231 -1.929 7.985 18.191 hybrid contribution 1.193 1.360 0.071 1.810 sum -15.038 -0.569 8.056 17.069 Atomic orbital electron populations 1.20804 0.88312 1.03925 1.03386 1.21228 0.96952 0.87297 0.91568 1.21907 0.94445 0.99542 1.05541 1.22196 0.94552 0.97927 0.91317 1.21172 0.95538 0.94371 1.09771 1.17527 0.85688 0.82601 0.78693 1.90746 1.71315 1.32954 1.46893 1.48018 1.08019 1.24099 1.51128 1.22577 0.77442 1.01575 1.01431 1.21158 0.99140 0.86494 0.86091 0.86606 1.21760 0.93914 0.97209 1.02098 1.22083 0.97853 0.96032 1.01622 1.21949 0.97448 0.96666 1.00094 1.21220 0.87110 0.96092 0.91263 0.90326 1.23082 0.96675 0.89533 0.95847 1.44431 0.99422 1.21219 1.64818 1.19135 0.94538 0.87675 1.36960 0.91472 1.25041 0.99214 0.96296 0.98776 1.69987 1.15822 1.20069 1.47861 0.86294 0.80714 0.82349 0.77376 1.21452 1.21830 1.20516 1.19055 0.86030 0.85025 0.90768 1.84670 1.76491 1.32067 1.34111 1.67103 1.09332 1.30416 1.16213 0.89984 0.90170 0.90168 0.83807 0.82451 0.91967 0.89954 0.90974 0.94417 0.95097 0.90327 0.94495 0.92179 0.91228 0.89594 0.93506 0.73310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.74 10.16 36.01 0.37 -0.37 16 2 C 0.17 1.79 6.78 -82.53 -0.56 1.23 16 3 C -0.19 -1.85 9.71 -39.50 -0.38 -2.23 16 4 C -0.03 -0.40 7.52 -38.89 -0.29 -0.69 16 5 C -0.20 -3.00 5.49 -104.69 -0.58 -3.57 16 6 C 0.57 9.97 4.70 -12.48 -0.06 9.91 16 7 O -0.54 -10.76 15.12 -13.80 -0.21 -10.97 16 8 N -0.58 -10.24 1.65 -173.48 -0.29 -10.53 16 9 C 0.09 1.82 5.89 -3.49 -0.02 1.80 16 10 C 0.18 4.01 2.66 -66.85 -0.18 3.83 16 11 H 0.12 2.96 5.89 -51.93 -0.31 2.65 16 12 C -0.11 -2.48 5.56 -26.53 -0.15 -2.63 16 13 C -0.14 -2.84 5.55 -26.72 -0.15 -2.98 16 14 C -0.12 -2.38 5.59 -26.53 -0.15 -2.53 16 15 C 0.15 2.90 3.62 -66.84 -0.24 2.66 16 16 H 0.08 1.45 8.01 -51.93 -0.42 1.04 16 17 C 0.07 1.15 4.21 -3.49 -0.01 1.14 16 18 N -0.58 -13.25 2.53 -155.43 -0.39 -13.65 16 19 C -0.25 -6.44 9.71 -15.06 -0.15 -6.59 16 20 H 0.07 1.67 7.89 -52.49 -0.41 1.26 16 21 C 0.01 0.16 4.99 -17.43 -0.09 0.07 16 22 N -0.89 -24.38 10.97 55.49 0.61 -23.77 16 23 Si 0.90 20.70 29.59 -169.99 -5.03 15.67 16 24 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 25 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 C 0.37 5.58 7.74 -16.61 -0.13 5.46 16 28 O -0.47 -7.09 12.07 -37.05 -0.45 -7.54 16 29 N -0.51 -7.00 10.28 -9.21 -0.09 -7.09 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.08 0.38 8.07 -51.93 -0.42 -0.04 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.14 0.88 8.06 -52.48 -0.42 0.46 16 34 H 0.16 1.60 5.49 -52.49 -0.29 1.31 16 35 H 0.06 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.08 1.64 6.98 -51.92 -0.36 1.28 16 37 H 0.07 1.82 7.97 -51.93 -0.41 1.40 16 38 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 1.59 2.50 -52.48 -0.13 1.46 16 41 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.07 1.03 8.06 -51.93 -0.42 0.61 16 44 H 0.09 1.16 3.97 -51.92 -0.21 0.95 16 45 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 46 H 0.41 4.55 9.06 45.56 0.41 4.97 16 LS Contribution 350.65 15.07 5.28 5.28 Total: -1.00 -31.39 350.65 -8.81 -40.20 By element: Atomic # 1 Polarization: 13.36 SS G_CDS: -5.48 Total: 7.89 kcal Atomic # 6 Polarization: 7.27 SS G_CDS: -2.76 Total: 4.51 kcal Atomic # 7 Polarization: -54.87 SS G_CDS: -0.17 Total: -55.04 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.66 Total: -18.51 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -31.39 -8.81 -40.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039934103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.608 kcal (2) G-P(sol) polarization free energy of solvation -31.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds