Wall clock time and date at job start Tue Mar 31 2020 16:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38354 * 119.41104 * 2 1 4 4 C 1.38338 * 119.45601 * 179.74218 * 3 2 1 5 5 C 1.39978 * 118.35254 * 0.47592 * 4 3 2 6 6 C 1.47527 * 120.59577 * 179.80177 * 5 4 3 7 7 O 1.21592 * 119.99437 * 150.04166 * 6 5 4 8 8 N 1.34768 * 120.00013 * 330.03591 * 6 5 4 9 9 C 1.46950 * 120.44239 * 175.13969 * 8 6 5 10 10 C 1.53584 * 108.53455 * 125.77950 * 9 8 6 11 11 H 1.08998 * 110.60432 * 172.16273 * 10 9 8 12 12 C 1.53374 * 108.68883 * 294.35984 * 10 9 8 13 13 C 1.53011 * 109.27172 * 60.29932 * 12 10 9 14 14 C 1.53019 * 109.79702 * 60.56451 * 13 12 10 15 15 C 1.53374 * 109.25232 * 299.42286 * 14 13 12 16 16 H 1.08998 * 111.08013 * 177.83161 * 15 14 13 17 17 C 1.46941 * 120.44616 * 355.16660 * 8 6 5 18 18 N 1.47569 * 107.98235 * 56.38434 * 15 14 13 19 19 C 1.36937 * 121.60944 * 122.27739 * 18 15 14 20 20 H 1.07997 * 120.00209 * 28.01530 * 19 18 15 21 21 C 1.38814 * 119.99303 * 208.01403 * 19 18 15 22 22 N 1.31615 * 120.00436 * 17.86408 * 21 19 18 23 23 Si 1.86812 * 119.99576 * 197.86200 * 21 19 18 24 24 H 1.48501 * 109.47112 * 89.99993 * 23 21 19 25 25 H 1.48500 * 109.46913 * 210.00222 * 23 21 19 26 26 H 1.48500 * 109.46902 * 329.99808 * 23 21 19 27 27 C 1.40278 * 118.80714 * 359.52704 * 5 4 3 28 28 O 1.35427 * 119.80145 * 180.25000 * 27 5 4 29 29 N 1.31883 * 119.40362 * 179.97438 * 2 1 3 30 30 H 1.08996 * 109.47374 * 270.02595 * 1 2 3 31 31 H 1.09006 * 109.46729 * 30.02389 * 1 2 3 32 32 H 1.08999 * 109.46896 * 150.02029 * 1 2 3 33 33 H 1.08004 * 120.26701 * 359.97438 * 3 2 1 34 34 H 1.08001 * 120.81771 * 180.25134 * 4 3 2 35 35 H 1.09008 * 109.62849 * 245.49616 * 9 8 6 36 36 H 1.09008 * 109.62422 * 6.06385 * 9 8 6 37 37 H 1.08999 * 109.50513 * 180.23823 * 12 10 9 38 38 H 1.08996 * 109.50454 * 300.32285 * 12 10 9 39 39 H 1.09000 * 109.41669 * 180.66291 * 13 12 10 40 40 H 1.08993 * 109.41758 * 300.53480 * 13 12 10 41 41 H 1.08999 * 109.50513 * 179.49134 * 14 13 12 42 42 H 1.09000 * 109.50707 * 59.35990 * 14 13 12 43 43 H 1.08993 * 109.62819 * 114.48649 * 17 8 6 44 44 H 1.09008 * 109.77672 * 354.00830 * 17 8 6 45 45 H 0.97004 * 119.99772 * 180.02562 * 22 21 19 46 46 H 0.96702 * 113.99899 * 90.00264 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2063 0.0054 5 6 4.2355 -0.0250 0.0005 6 6 5.7097 -0.0816 0.0015 7 8 6.2817 -1.0189 0.5238 8 7 6.4223 0.9056 -0.5764 9 6 7.8892 0.9144 -0.4889 10 6 8.4625 1.0079 -1.9106 11 1 9.5420 1.1559 -1.8799 12 6 8.1029 -0.2746 -2.6709 13 6 6.5804 -0.4128 -2.7365 14 6 5.9825 0.7868 -3.4748 15 6 6.3337 2.0732 -2.7171 16 1 5.9538 2.9516 -3.2389 17 6 5.7430 1.9878 -1.3019 18 7 7.8023 2.1400 -2.5889 19 6 8.5176 3.2015 -3.0753 20 1 8.0574 4.1759 -3.1460 21 6 9.8345 3.0250 -3.4773 22 7 10.2897 1.8158 -3.7281 23 14 10.9607 4.5040 -3.6624 24 1 11.6502 4.7656 -2.3734 25 1 11.9698 4.2288 -4.7166 26 1 10.1574 5.6931 -4.0444 27 6 3.4758 -1.2042 0.0005 28 8 4.0991 -2.4065 0.0009 29 7 2.1545 -1.1489 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5142 32 1 -0.3633 -0.8902 -0.5135 33 1 1.6412 2.1375 -0.0004 34 1 4.1223 2.1343 0.0096 35 1 8.2160 1.7748 0.0951 36 1 8.2332 -0.0051 -0.0151 37 1 8.5076 -0.2241 -3.6817 38 1 8.5250 -1.1355 -2.1525 39 1 6.3223 -1.3297 -3.2662 40 1 6.1763 -0.4525 -1.7250 41 1 4.8991 0.6791 -3.5266 42 1 6.3928 0.8348 -4.4834 43 1 5.9006 2.9326 -0.7818 44 1 4.6752 1.7772 -1.3631 45 1 11.2100 1.6925 -4.0086 46 1 4.2798 -2.7555 0.8845 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001039934103.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:45 Heat of formation + Delta-G solvation = 11.235815 kcal Electronic energy + Delta-G solvation = -30620.277437 eV Core-core repulsion = 26704.766976 eV Total energy + Delta-G solvation = -3915.510461 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.60474 -41.11687 -39.14932 -38.21274 -35.89655 -34.67764 -34.17506 -33.17548 -32.58553 -32.17473 -29.35426 -28.14004 -27.24981 -25.61047 -24.55588 -23.81961 -23.04556 -22.86715 -21.34264 -20.15780 -19.54761 -18.90012 -18.07081 -17.81496 -16.84550 -16.76635 -16.57602 -16.50651 -15.70144 -15.65840 -15.31220 -15.02093 -14.75780 -14.70708 -14.59512 -14.41885 -13.95654 -13.67210 -13.56903 -13.39958 -13.17093 -13.07389 -13.05737 -12.91835 -12.62567 -12.52329 -12.42706 -12.10980 -11.89575 -11.78079 -11.67837 -11.33227 -11.15260 -11.13210 -10.77932 -10.46184 -10.37070 -9.84755 -9.47401 -8.47374 -7.80240 -5.27297 -0.42167 0.07919 1.50084 1.52561 1.59651 1.66867 1.95603 2.45868 2.53914 2.71784 3.30936 3.32874 3.48501 3.66071 3.70087 3.96511 4.08431 4.12031 4.16778 4.24444 4.28243 4.31908 4.43061 4.45872 4.59962 4.68094 4.73267 4.79292 4.83001 4.85750 4.87195 4.94986 5.00244 5.05190 5.09578 5.18374 5.23059 5.27824 5.35830 5.49815 5.55328 5.65651 5.71239 5.82379 6.40654 6.41569 6.52365 6.85110 7.07039 7.15733 7.84199 8.43760 9.23089 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.022098 B = 0.003855 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.759549 B = 7262.190019 C = 7768.280073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.164 3.836 3 C -0.175 4.175 4 C -0.034 4.034 5 C -0.224 4.224 6 C 0.565 3.435 7 O -0.572 6.572 8 N -0.583 5.583 9 C 0.106 3.894 10 C 0.180 3.820 11 H 0.081 0.919 12 C -0.103 4.103 13 C -0.135 4.135 14 C -0.116 4.116 15 C 0.144 3.856 16 H 0.093 0.907 17 C 0.080 3.920 18 N -0.591 5.591 19 C -0.254 4.254 20 H 0.076 0.924 21 C -0.046 4.046 22 N -0.925 5.925 23 Si 0.962 3.038 24 H -0.289 1.289 25 H -0.304 1.304 26 H -0.267 1.267 27 C 0.353 3.647 28 O -0.488 6.488 29 N -0.532 5.532 30 H 0.098 0.902 31 H 0.110 0.890 32 H 0.072 0.928 33 H 0.191 0.809 34 H 0.177 0.823 35 H 0.069 0.931 36 H 0.073 0.927 37 H 0.034 0.966 38 H 0.030 0.970 39 H 0.024 0.976 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.032 0.968 43 H 0.091 0.909 44 H 0.119 0.881 45 H 0.246 0.754 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.101 1.848 9.409 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.026 3.974 3 C -0.194 4.194 4 C -0.059 4.059 5 C -0.231 4.231 6 C 0.356 3.644 7 O -0.453 6.453 8 N -0.315 5.315 9 C -0.018 4.018 10 C 0.073 3.927 11 H 0.099 0.901 12 C -0.142 4.142 13 C -0.173 4.173 14 C -0.155 4.155 15 C 0.037 3.963 16 H 0.110 0.890 17 C -0.042 4.042 18 N -0.313 5.313 19 C -0.383 4.383 20 H 0.094 0.906 21 C -0.242 4.242 22 N -0.571 5.571 23 Si 0.792 3.208 24 H -0.216 1.216 25 H -0.232 1.232 26 H -0.192 1.192 27 C 0.174 3.826 28 O -0.297 6.297 29 N -0.253 5.253 30 H 0.117 0.883 31 H 0.129 0.871 32 H 0.091 0.909 33 H 0.208 0.792 34 H 0.194 0.806 35 H 0.087 0.913 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.043 0.957 40 H 0.108 0.892 41 H 0.086 0.914 42 H 0.051 0.949 43 H 0.109 0.891 44 H 0.137 0.863 45 H 0.055 0.945 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -20.052 0.611 9.015 21.994 hybrid contribution 2.213 0.534 -0.231 2.288 sum -17.840 1.144 8.784 19.918 Atomic orbital electron populations 1.20961 0.85503 1.05067 1.04755 1.22034 0.98790 0.86983 0.89586 1.22378 0.93546 1.00864 1.02609 1.22433 0.95666 0.97080 0.90721 1.20955 0.93409 0.95911 1.12848 1.18000 0.87033 0.81636 0.77722 1.90724 1.72358 1.34119 1.48133 1.48007 1.06992 1.24866 1.51608 1.22196 0.79176 1.01400 0.99070 1.20916 0.97544 0.86346 0.87891 0.90139 1.21628 0.95442 0.97347 0.99791 1.22085 0.96211 0.96556 1.02454 1.21880 0.98953 0.96304 0.98341 1.21498 0.84858 0.96254 0.93691 0.88952 1.23174 0.97895 0.89903 0.93270 1.44594 1.01128 1.20631 1.64915 1.19485 0.94807 0.88677 1.35380 0.90639 1.25716 1.00721 0.98209 0.99582 1.70162 1.15392 1.21862 1.49676 0.85344 0.78789 0.80116 0.76573 1.21601 1.23180 1.19184 1.19209 0.86722 0.84848 0.91866 1.84616 1.76896 1.32850 1.35374 1.67174 1.08640 1.32288 1.17153 0.88314 0.87145 0.90937 0.79222 0.80558 0.91306 0.90876 0.94680 0.95076 0.95742 0.89222 0.91446 0.94928 0.89121 0.86329 0.94465 0.72167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 10.16 71.24 0.72 -0.24 16 2 C 0.16 2.82 6.78 42.58 0.29 3.11 16 3 C -0.17 -2.34 9.71 22.32 0.22 -2.12 16 4 C -0.03 -0.63 7.52 22.72 0.17 -0.46 16 5 C -0.22 -6.17 5.49 -19.91 -0.11 -6.28 16 6 C 0.57 19.33 4.70 86.69 0.41 19.74 16 7 O -0.57 -23.06 15.12 14.24 0.22 -22.84 16 8 N -0.58 -19.71 1.65 -821.02 -1.35 -21.07 16 9 C 0.11 4.17 5.89 86.49 0.51 4.68 16 10 C 0.18 8.38 2.66 45.11 0.12 8.50 16 11 H 0.08 4.34 5.89 -2.39 -0.01 4.32 16 12 C -0.10 -4.84 5.56 30.72 0.17 -4.67 16 13 C -0.14 -5.61 5.55 30.60 0.17 -5.44 16 14 C -0.12 -4.37 5.59 30.73 0.17 -4.20 16 15 C 0.14 5.22 3.62 45.11 0.16 5.39 16 16 H 0.09 3.11 8.01 -2.39 -0.02 3.10 16 17 C 0.08 2.27 4.21 86.49 0.36 2.64 16 18 N -0.59 -27.02 2.53 -645.67 -1.63 -28.65 16 19 C -0.25 -12.79 9.71 84.03 0.82 -11.98 16 20 H 0.08 3.63 7.89 -2.91 -0.02 3.61 16 21 C -0.05 -2.45 4.99 84.86 0.42 -2.03 16 22 N -0.93 -52.70 10.97 21.65 0.24 -52.46 16 23 Si 0.96 43.16 29.59 68.60 2.03 45.19 16 24 H -0.29 -12.89 7.11 99.48 0.71 -12.18 16 25 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 26 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 27 C 0.35 10.19 7.74 85.13 0.66 10.85 16 28 O -0.49 -15.04 12.07 -68.98 -0.83 -15.87 16 29 N -0.53 -13.43 10.28 -296.05 -3.04 -16.47 16 30 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.11 0.38 8.07 -2.38 -0.02 0.36 16 32 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.19 0.82 8.06 -2.91 -0.02 0.80 16 34 H 0.18 2.58 5.49 -2.91 -0.02 2.57 16 35 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 36 H 0.07 3.01 6.98 -2.38 -0.02 2.99 16 37 H 0.03 1.87 7.97 -2.39 -0.02 1.85 16 38 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 3.60 2.50 -3.47 -0.01 3.59 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 2.26 8.06 -2.39 -0.02 2.24 16 44 H 0.12 2.62 3.97 -2.38 -0.01 2.61 16 45 H 0.25 13.86 8.31 -92.71 -0.77 13.09 16 46 H 0.42 9.76 9.06 -74.06 -0.67 9.09 16 Total: -1.00 -72.05 350.65 1.24 -70.81 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: 0.36 Total: 23.89 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.27 Total: 17.48 kcal Atomic # 7 Polarization: -112.86 SS G_CDS: -5.79 Total: -118.65 kcal Atomic # 8 Polarization: -38.10 SS G_CDS: -0.62 Total: -38.71 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.19 kcal Total: -72.05 1.24 -70.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001039934103.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.044 kcal (2) G-P(sol) polarization free energy of solvation -72.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.242 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.808 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds