Wall clock time and date at job start Tue Mar 31 2020 17:40:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37995 * 120.82111 * 2 1 4 4 C 1.39127 * 119.26633 * 179.97438 * 3 2 1 5 5 O 1.35501 * 119.52065 * 179.97438 * 4 3 2 6 6 N 1.32428 * 120.94777 * 359.97438 * 4 3 2 7 7 C 1.31634 * 121.80314 * 359.72662 * 6 4 3 8 8 C 1.39562 * 120.62326 * 0.54182 * 7 6 4 9 9 C 1.47619 * 120.49841 * 179.75220 * 8 7 6 10 10 O 1.21585 * 119.99926 * 219.25469 * 9 8 7 11 11 N 1.34777 * 120.00149 * 39.25328 * 9 8 7 12 12 C 1.48259 * 127.73391 * 353.96001 * 11 9 8 13 13 C 1.54719 * 104.66337 * 141.18947 * 12 11 9 14 14 C 1.53042 * 104.47415 * 23.66967 * 13 12 11 15 15 C 1.53882 * 111.37274 * 121.01271 * 14 13 12 16 16 C 1.55143 * 101.45144 * 154.99361 * 15 14 13 17 17 N 1.47536 * 105.06463 * 324.20039 * 16 15 14 18 18 C 1.36937 * 125.67188 * 203.97040 * 17 16 15 19 19 H 1.07996 * 120.00451 * 153.42339 * 18 17 16 20 20 C 1.38814 * 119.99996 * 333.42353 * 18 17 16 21 21 N 1.31612 * 120.00180 * 161.92109 * 20 18 17 22 22 Si 1.86808 * 119.99950 * 341.91559 * 20 18 17 23 23 H 1.48492 * 109.46894 * 84.69937 * 22 20 18 24 24 H 1.48499 * 109.47101 * 204.70263 * 22 20 18 25 25 H 1.48502 * 109.46806 * 324.70098 * 22 20 18 26 26 C 1.47592 * 108.52124 * 23.94385 * 17 16 15 27 27 C 1.48446 * 127.73533 * 173.96236 * 11 9 8 28 28 H 1.09001 * 109.47340 * 266.12596 * 1 2 3 29 29 H 1.08993 * 109.47277 * 26.13312 * 1 2 3 30 30 H 1.09007 * 109.46941 * 146.13575 * 1 2 3 31 31 H 1.08006 * 120.36446 * 359.95144 * 3 2 1 32 32 H 0.96700 * 114.00486 * 90.00307 * 5 4 3 33 33 H 1.08001 * 119.69001 * 180.26288 * 7 6 4 34 34 H 1.09001 * 110.39692 * 22.39733 * 12 11 9 35 35 H 1.08997 * 110.49393 * 260.03145 * 12 11 9 36 36 H 1.08994 * 110.43220 * 264.91693 * 13 12 11 37 37 H 1.09004 * 110.53372 * 142.46546 * 13 12 11 38 38 H 1.09001 * 111.03195 * 36.94750 * 15 14 13 39 39 H 1.09001 * 111.05760 * 273.05008 * 15 14 13 40 40 H 1.08996 * 110.34117 * 83.13265 * 16 15 14 41 41 H 1.09001 * 110.33523 * 205.27651 * 16 15 14 42 42 H 0.97006 * 120.00166 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.94334 * 238.65624 * 26 17 16 44 44 H 1.09004 * 109.96934 * 117.40417 * 26 17 16 45 45 H 1.09001 * 110.46711 * 99.69447 * 27 11 9 46 46 H 1.09007 * 110.46244 * 337.11123 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2547 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0074 8 6 2.2256 -1.2043 0.0015 9 6 1.5172 -2.4994 0.0026 10 8 0.5131 -2.6437 -0.6676 11 7 1.9835 -3.5220 0.7465 12 6 3.2454 -3.5777 1.5228 13 6 2.8742 -4.3350 2.8199 14 6 1.6414 -5.1594 2.4420 15 6 1.8864 -6.6638 2.6537 16 6 0.4398 -7.1855 2.8592 17 7 -0.2528 -6.1136 3.5995 18 6 -1.3567 -6.2761 4.3933 19 1 -1.5439 -5.5890 5.2052 20 6 -2.2353 -7.3239 4.1543 21 7 -3.0775 -7.7033 5.0918 22 14 -2.2225 -8.1952 2.5019 23 1 -1.1786 -9.2512 2.5074 24 1 -3.5506 -8.8131 2.2579 25 1 -1.9281 -7.2137 1.4271 26 6 0.4446 -4.8389 3.3406 27 6 1.3488 -4.8448 0.9721 28 1 -0.3634 -0.0694 1.0253 29 1 -0.3633 0.9225 -0.4526 30 1 -0.3633 -0.8534 -0.5727 31 1 1.6935 2.1314 -0.0008 32 1 4.5070 2.6454 0.8832 33 1 4.1849 -2.0807 0.0124 34 1 3.5923 -2.5712 1.7566 35 1 4.0099 -4.1234 0.9698 36 1 2.6318 -3.6307 3.6156 37 1 3.6900 -4.9894 3.1273 38 1 2.4955 -6.8401 3.5403 39 1 2.3430 -7.1141 1.7723 40 1 -0.0426 -7.3540 1.8965 41 1 0.4484 -8.1053 3.4440 42 1 -3.6917 -8.4353 4.9247 43 1 0.7896 -4.4064 4.2799 44 1 -0.2254 -4.1441 2.8343 45 1 1.7972 -5.5982 0.3245 46 1 0.2737 -4.7856 0.8019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041666197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:17 Heat of formation + Delta-G solvation = 4.548908 kcal Electronic energy + Delta-G solvation = -28962.340980 eV Core-core repulsion = 25046.540553 eV Total energy + Delta-G solvation = -3915.800427 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28479 -40.14297 -38.67758 -37.31220 -36.07661 -34.15328 -32.86401 -31.45382 -30.62374 -29.53622 -28.58056 -28.22161 -26.21041 -24.86537 -23.73841 -22.76089 -22.30879 -20.88760 -20.06018 -19.07186 -18.77055 -17.88637 -17.16110 -16.73734 -16.31834 -16.08503 -15.53055 -15.25064 -14.95185 -14.70466 -14.33787 -14.18288 -13.70967 -13.58450 -13.42728 -13.28853 -13.04678 -12.86172 -12.56021 -12.47551 -12.27766 -12.08669 -12.04278 -11.96818 -11.66174 -11.56433 -10.98066 -10.95334 -10.60388 -10.33982 -10.27926 -10.06217 -9.97956 -9.89898 -9.64724 -9.49799 -9.33614 -8.82857 -8.65611 -6.96252 -5.96342 -3.33392 0.26192 0.76359 2.46108 2.69596 3.12126 3.33919 3.35271 3.47892 3.51068 4.09974 4.17813 4.30544 4.47626 4.53607 4.57330 4.68433 4.77236 4.85080 4.95323 5.04801 5.07845 5.21264 5.26076 5.30548 5.39215 5.43497 5.45604 5.53627 5.64453 5.68450 5.78931 5.81137 5.92988 5.96925 6.02956 6.07075 6.14127 6.21147 6.30241 6.52789 6.61251 6.63985 6.74015 7.01242 7.37494 7.42134 7.77315 7.96233 8.31325 8.82472 9.67013 10.18774 11.20148 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.003051 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.280613 B = 9174.338639 C = 9625.535966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.032 3.968 3 C -0.194 4.194 4 C 0.331 3.669 5 O -0.481 6.481 6 N -0.510 5.510 7 C 0.158 3.842 8 C -0.192 4.192 9 C 0.586 3.414 10 O -0.527 6.527 11 N -0.614 5.614 12 C 0.090 3.910 13 C -0.118 4.118 14 C -0.087 4.087 15 C -0.117 4.117 16 C 0.110 3.890 17 N -0.609 5.609 18 C -0.243 4.243 19 H 0.088 0.912 20 C 0.026 3.974 21 N -0.911 5.911 22 Si 0.887 3.113 23 H -0.285 1.285 24 H -0.302 1.302 25 H -0.274 1.274 26 C 0.150 3.850 27 C 0.123 3.877 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.148 0.852 32 H 0.404 0.596 33 H 0.168 0.832 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.264 0.736 43 H 0.035 0.965 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.724 15.299 -8.561 24.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.024 3.976 3 C -0.215 4.215 4 C 0.153 3.847 5 O -0.289 6.289 6 N -0.229 5.229 7 C 0.000 4.000 8 C -0.197 4.197 9 C 0.375 3.625 10 O -0.404 6.404 11 N -0.347 5.347 12 C -0.033 4.033 13 C -0.156 4.156 14 C -0.088 4.088 15 C -0.155 4.155 16 C -0.015 4.015 17 N -0.336 5.336 18 C -0.370 4.370 19 H 0.105 0.895 20 C -0.173 4.173 21 N -0.554 5.554 22 Si 0.717 3.283 23 H -0.212 1.212 24 H -0.230 1.230 25 H -0.200 1.200 26 C 0.024 3.976 27 C 0.002 3.998 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.165 0.835 32 H 0.263 0.737 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.103 0.897 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.042 0.958 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.092 0.908 46 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 16.783 15.240 -9.477 24.570 hybrid contribution -0.812 -0.425 -0.374 0.990 sum 15.970 14.815 -9.851 23.907 Atomic orbital electron populations 1.21244 0.88869 1.05460 1.04274 1.20295 0.97588 0.90518 0.89210 1.21983 0.93721 0.99549 1.06266 1.19343 0.87095 0.85226 0.93040 1.84720 1.75946 1.34060 1.34175 1.67182 1.41910 0.98197 1.15624 1.22892 0.90158 0.95364 0.91591 1.20813 0.95281 0.94329 1.09295 1.17463 0.83846 0.82108 0.79108 1.90763 1.25713 1.82314 1.41606 1.49016 1.22908 1.14970 1.47851 1.22786 0.86494 1.01309 0.92679 1.22478 0.97651 0.98917 0.96594 1.21627 0.96129 0.96468 0.94600 1.22713 0.98319 0.93134 1.01382 1.22037 0.90195 0.93558 0.95701 1.44893 1.31653 1.01023 1.56027 1.18595 0.97776 1.13907 1.06727 0.89458 1.25198 0.96148 0.98420 0.97552 1.69792 1.24371 1.29101 1.32162 0.86871 0.75775 0.79343 0.86264 1.21166 1.23019 1.19976 1.21358 0.90989 0.89907 0.95297 1.22369 1.00108 0.82432 0.94916 0.89868 0.90716 0.87408 0.83455 0.73730 0.81497 0.90140 0.90367 0.90364 0.89711 0.90560 0.91305 0.95838 0.92457 0.92649 0.94675 0.95098 0.90762 0.89153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.59 36.01 0.35 -1.12 16 2 C 0.03 0.34 5.94 -103.96 -0.62 -0.27 16 3 C -0.19 -1.75 9.71 -39.34 -0.38 -2.13 16 4 C 0.33 3.23 7.74 -16.96 -0.13 3.10 16 5 O -0.48 -3.80 13.55 -18.20 -0.25 -4.05 16 6 N -0.51 -5.56 10.37 -12.97 -0.13 -5.69 16 7 C 0.16 1.61 8.96 -17.14 -0.15 1.45 16 8 C -0.19 -2.23 5.55 -104.82 -0.58 -2.81 16 9 C 0.59 8.19 7.25 -12.43 -0.09 8.10 16 10 O -0.53 -9.12 14.73 5.29 0.08 -9.04 16 11 N -0.61 -7.75 3.33 -170.71 -0.57 -8.32 16 12 C 0.09 0.82 5.43 -2.17 -0.01 0.80 16 13 C -0.12 -1.23 6.31 -25.80 -0.16 -1.39 16 14 C -0.09 -1.25 0.79 -153.93 -0.12 -1.37 16 15 C -0.12 -1.73 5.90 -25.14 -0.15 -1.88 16 16 C 0.11 2.28 4.69 -2.34 -0.01 2.27 16 17 N -0.61 -14.39 3.13 -170.15 -0.53 -14.93 16 18 C -0.24 -6.86 10.58 -15.06 -0.16 -7.02 16 19 H 0.09 2.63 8.06 -52.49 -0.42 2.21 16 20 C 0.03 0.75 5.46 -17.43 -0.10 0.66 16 21 N -0.91 -28.13 13.97 55.49 0.78 -27.36 16 22 Si 0.89 22.74 24.34 -169.99 -4.14 18.60 16 23 H -0.28 -6.96 6.77 56.52 0.38 -6.58 16 24 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 25 H -0.27 -6.97 6.68 56.52 0.38 -6.59 16 26 C 0.15 2.86 6.37 -3.42 -0.02 2.83 16 27 C 0.12 1.78 6.01 -2.90 -0.02 1.76 16 28 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 30 H 0.11 1.40 5.48 -51.93 -0.28 1.12 16 31 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 32 H 0.40 1.08 9.06 45.56 0.41 1.50 16 33 H 0.17 1.34 6.17 -52.49 -0.32 1.01 16 34 H 0.08 0.64 5.77 -51.93 -0.30 0.34 16 35 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 36 H 0.08 0.84 7.41 -51.93 -0.38 0.45 16 37 H 0.08 0.73 7.62 -51.93 -0.40 0.34 16 38 H 0.08 1.06 7.90 -51.93 -0.41 0.65 16 39 H 0.07 0.85 7.65 -51.93 -0.40 0.45 16 40 H 0.02 0.52 5.30 -51.93 -0.28 0.24 16 41 H 0.06 1.27 7.31 -51.93 -0.38 0.89 16 42 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 43 H 0.04 0.66 7.49 -51.93 -0.39 0.27 16 44 H 0.03 0.64 7.63 -51.93 -0.40 0.24 16 45 H 0.07 0.96 7.59 -51.93 -0.39 0.57 16 46 H 0.09 1.61 7.47 -51.92 -0.39 1.22 16 LS Contribution 358.84 15.07 5.41 5.41 Total: -1.00 -35.58 358.84 -7.31 -42.89 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -5.59 Total: -0.50 kcal Atomic # 6 Polarization: 5.34 SS G_CDS: -2.36 Total: 2.98 kcal Atomic # 7 Polarization: -55.84 SS G_CDS: -0.46 Total: -56.30 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: -0.17 Total: -13.09 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.14 Total: 18.60 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -35.58 -7.31 -42.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041666197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.439 kcal (2) G-P(sol) polarization free energy of solvation -35.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds