Wall clock time and date at job start Tue Mar 31 2020 17:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.37995 * 120.82111 * 2 1 4 4 C 1.39127 * 119.26633 * 179.97438 * 3 2 1 5 5 O 1.35501 * 119.52065 * 179.97438 * 4 3 2 6 6 N 1.32428 * 120.94777 * 359.97438 * 4 3 2 7 7 C 1.31634 * 121.80314 * 359.72662 * 6 4 3 8 8 C 1.39562 * 120.62326 * 0.54182 * 7 6 4 9 9 C 1.47619 * 120.49841 * 179.75220 * 8 7 6 10 10 O 1.21585 * 119.99926 * 219.25469 * 9 8 7 11 11 N 1.34777 * 120.00149 * 39.25328 * 9 8 7 12 12 C 1.48259 * 127.73391 * 353.96001 * 11 9 8 13 13 C 1.54719 * 104.66337 * 141.18947 * 12 11 9 14 14 C 1.53042 * 104.47415 * 23.66967 * 13 12 11 15 15 C 1.53882 * 111.37274 * 121.01271 * 14 13 12 16 16 C 1.55143 * 101.45144 * 154.99361 * 15 14 13 17 17 N 1.47536 * 105.06463 * 324.20039 * 16 15 14 18 18 C 1.36937 * 125.67188 * 203.97040 * 17 16 15 19 19 H 1.07996 * 120.00451 * 153.42339 * 18 17 16 20 20 C 1.38814 * 119.99996 * 333.42353 * 18 17 16 21 21 N 1.31612 * 120.00180 * 161.92109 * 20 18 17 22 22 Si 1.86808 * 119.99950 * 341.91559 * 20 18 17 23 23 H 1.48492 * 109.46894 * 84.69937 * 22 20 18 24 24 H 1.48499 * 109.47101 * 204.70263 * 22 20 18 25 25 H 1.48502 * 109.46806 * 324.70098 * 22 20 18 26 26 C 1.47592 * 108.52124 * 23.94385 * 17 16 15 27 27 C 1.48446 * 127.73533 * 173.96236 * 11 9 8 28 28 H 1.09001 * 109.47340 * 266.12596 * 1 2 3 29 29 H 1.08993 * 109.47277 * 26.13312 * 1 2 3 30 30 H 1.09007 * 109.46941 * 146.13575 * 1 2 3 31 31 H 1.08006 * 120.36446 * 359.95144 * 3 2 1 32 32 H 0.96700 * 114.00486 * 90.00307 * 5 4 3 33 33 H 1.08001 * 119.69001 * 180.26288 * 7 6 4 34 34 H 1.09001 * 110.39692 * 22.39733 * 12 11 9 35 35 H 1.08997 * 110.49393 * 260.03145 * 12 11 9 36 36 H 1.08994 * 110.43220 * 264.91693 * 13 12 11 37 37 H 1.09004 * 110.53372 * 142.46546 * 13 12 11 38 38 H 1.09001 * 111.03195 * 36.94750 * 15 14 13 39 39 H 1.09001 * 111.05760 * 273.05008 * 15 14 13 40 40 H 1.08996 * 110.34117 * 83.13265 * 16 15 14 41 41 H 1.09001 * 110.33523 * 205.27651 * 16 15 14 42 42 H 0.97006 * 120.00166 * 179.97438 * 21 20 18 43 43 H 1.09003 * 109.94334 * 238.65624 * 26 17 16 44 44 H 1.09004 * 109.96934 * 117.40417 * 26 17 16 45 45 H 1.09001 * 110.46711 * 99.69447 * 27 11 9 46 46 H 1.09007 * 110.46244 * 337.11123 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2140 1.1851 0.0000 4 6 3.6048 1.1473 0.0005 5 8 4.3042 2.3079 0.0000 6 7 4.2547 -0.0065 0.0016 7 6 3.6205 -1.1600 0.0074 8 6 2.2256 -1.2043 0.0015 9 6 1.5172 -2.4994 0.0026 10 8 0.5131 -2.6437 -0.6676 11 7 1.9835 -3.5220 0.7465 12 6 3.2454 -3.5777 1.5228 13 6 2.8742 -4.3350 2.8199 14 6 1.6414 -5.1594 2.4420 15 6 1.8864 -6.6638 2.6537 16 6 0.4398 -7.1855 2.8592 17 7 -0.2528 -6.1136 3.5995 18 6 -1.3567 -6.2761 4.3933 19 1 -1.5439 -5.5890 5.2052 20 6 -2.2353 -7.3239 4.1543 21 7 -3.0775 -7.7033 5.0918 22 14 -2.2225 -8.1952 2.5019 23 1 -1.1786 -9.2512 2.5074 24 1 -3.5506 -8.8131 2.2579 25 1 -1.9281 -7.2137 1.4271 26 6 0.4446 -4.8389 3.3406 27 6 1.3488 -4.8448 0.9721 28 1 -0.3634 -0.0694 1.0253 29 1 -0.3633 0.9225 -0.4526 30 1 -0.3633 -0.8534 -0.5727 31 1 1.6935 2.1314 -0.0008 32 1 4.5070 2.6454 0.8832 33 1 4.1849 -2.0807 0.0124 34 1 3.5923 -2.5712 1.7566 35 1 4.0099 -4.1234 0.9698 36 1 2.6318 -3.6307 3.6156 37 1 3.6900 -4.9894 3.1273 38 1 2.4955 -6.8401 3.5403 39 1 2.3430 -7.1141 1.7723 40 1 -0.0426 -7.3540 1.8965 41 1 0.4484 -8.1053 3.4440 42 1 -3.6917 -8.4353 4.9247 43 1 0.7896 -4.4064 4.2799 44 1 -0.2254 -4.1441 2.8343 45 1 1.7972 -5.5982 0.3245 46 1 0.2737 -4.7856 0.8019 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041666197.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:40:16 Heat of formation + Delta-G solvation = -24.744188 kcal Electronic energy + Delta-G solvation = -28963.611224 eV Core-core repulsion = 25046.540553 eV Total energy + Delta-G solvation = -3917.070671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.13808 -41.14951 -39.79127 -38.03204 -37.42786 -34.97651 -34.62138 -32.92868 -31.59844 -30.85350 -29.79220 -29.11865 -27.59643 -26.14877 -24.83777 -23.64450 -23.27219 -22.68541 -20.96800 -20.27792 -19.46260 -19.00021 -18.61004 -17.88879 -17.24049 -17.15118 -16.91417 -16.53122 -16.25504 -15.60049 -15.42010 -15.26854 -15.20781 -14.85329 -14.55476 -14.32647 -14.07646 -13.92612 -13.75574 -13.59996 -13.50028 -13.30552 -13.14885 -13.03670 -12.85534 -12.73053 -12.70520 -12.35271 -12.25392 -11.83928 -11.65498 -11.45452 -11.27786 -11.20595 -10.80949 -10.67904 -10.50896 -10.10232 -9.80293 -8.97143 -8.23094 -5.55588 -0.50305 0.02162 1.25592 1.35764 1.44546 1.49950 1.77990 2.36797 2.42543 2.61498 3.04158 3.23042 3.29586 3.46910 3.51559 3.56077 3.65866 3.67349 3.90601 4.05422 4.14904 4.25766 4.29495 4.35745 4.44142 4.51583 4.56680 4.61183 4.64427 4.64957 4.75668 4.82249 4.83845 4.86332 4.98759 5.02013 5.06401 5.12789 5.22180 5.24392 5.35284 5.36275 5.39471 5.71174 6.07421 6.42137 6.51395 6.74799 6.74958 6.95569 7.49395 8.09684 8.97693 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020549 B = 0.003051 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.280613 B = 9174.338639 C = 9625.535966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.020 3.980 3 C -0.188 4.188 4 C 0.334 3.666 5 O -0.486 6.486 6 N -0.526 5.526 7 C 0.167 3.833 8 C -0.209 4.209 9 C 0.582 3.418 10 O -0.574 6.574 11 N -0.614 5.614 12 C 0.091 3.909 13 C -0.110 4.110 14 C -0.076 4.076 15 C -0.099 4.099 16 C 0.098 3.902 17 N -0.628 5.628 18 C -0.236 4.236 19 H 0.052 0.948 20 C -0.032 4.032 21 N -0.958 5.958 22 Si 0.950 3.050 23 H -0.262 1.262 24 H -0.308 1.308 25 H -0.276 1.276 26 C 0.147 3.853 27 C 0.124 3.876 28 H 0.080 0.920 29 H 0.098 0.902 30 H 0.077 0.923 31 H 0.172 0.828 32 H 0.427 0.573 33 H 0.191 0.809 34 H 0.096 0.904 35 H 0.115 0.885 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.015 0.985 41 H 0.041 0.959 42 H 0.263 0.737 43 H 0.037 0.963 44 H 0.005 0.995 45 H 0.099 0.901 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.931 16.072 -9.884 28.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.012 3.988 3 C -0.209 4.209 4 C 0.156 3.844 5 O -0.298 6.298 6 N -0.245 5.245 7 C 0.009 3.991 8 C -0.214 4.214 9 C 0.372 3.628 10 O -0.455 6.455 11 N -0.346 5.346 12 C -0.030 4.030 13 C -0.148 4.148 14 C -0.078 4.078 15 C -0.137 4.137 16 C -0.027 4.027 17 N -0.356 5.356 18 C -0.365 4.365 19 H 0.069 0.931 20 C -0.227 4.227 21 N -0.604 5.604 22 Si 0.779 3.221 23 H -0.187 1.187 24 H -0.237 1.237 25 H -0.202 1.202 26 C 0.023 3.977 27 C 0.002 3.998 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.096 0.904 31 H 0.190 0.810 32 H 0.289 0.711 33 H 0.208 0.792 34 H 0.114 0.886 35 H 0.133 0.867 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.072 0.928 43 H 0.056 0.944 44 H 0.023 0.977 45 H 0.117 0.883 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 21.071 16.038 -10.780 28.590 hybrid contribution -2.112 -0.503 0.122 2.174 sum 18.959 15.535 -10.658 26.728 Atomic orbital electron populations 1.21167 0.89263 1.05297 1.03789 1.20427 0.97594 0.91133 0.89628 1.22145 0.93597 0.99808 1.05326 1.19520 0.87445 0.85527 0.91897 1.84673 1.75627 1.33232 1.36249 1.67268 1.42179 0.98650 1.16411 1.23148 0.89392 0.96097 0.90422 1.20715 0.96039 0.93246 1.11387 1.17875 0.83357 0.82994 0.78608 1.90742 1.27837 1.83119 1.43762 1.49088 1.23946 1.13945 1.47633 1.23092 0.85391 1.02734 0.91809 1.22491 0.96294 0.98813 0.97221 1.21515 0.95609 0.97217 0.93418 1.22716 0.94362 0.92533 1.04057 1.22198 0.93902 0.92390 0.94177 1.45051 1.30925 1.03993 1.55582 1.18534 0.99306 1.12517 1.06187 0.93063 1.25823 0.96355 0.99900 1.00606 1.69919 1.25974 1.30495 1.34049 0.85849 0.75898 0.78651 0.81698 1.18683 1.23682 1.20190 1.21503 0.92255 0.87653 0.96317 1.22257 0.97918 0.84219 0.95456 0.90141 0.88375 0.90422 0.81036 0.71052 0.79231 0.88582 0.86675 0.90775 0.86339 0.88690 0.87337 0.96715 0.94059 0.92754 0.94450 0.97696 0.88311 0.93707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.91 9.59 71.24 0.68 -2.22 16 2 C 0.02 0.41 5.94 -19.43 -0.12 0.30 16 3 C -0.19 -2.96 9.71 22.43 0.22 -2.74 16 4 C 0.33 5.59 7.74 84.82 0.66 6.25 16 5 O -0.49 -6.16 13.55 -88.02 -1.19 -7.35 16 6 N -0.53 -9.89 10.37 -307.81 -3.19 -13.08 16 7 C 0.17 2.93 8.96 85.04 0.76 3.69 16 8 C -0.21 -4.58 5.55 -19.99 -0.11 -4.69 16 9 C 0.58 16.07 7.25 86.72 0.63 16.70 16 10 O -0.57 -20.74 14.73 -3.98 -0.06 -20.80 16 11 N -0.61 -14.34 3.33 -812.27 -2.70 -17.05 16 12 C 0.09 1.24 5.43 86.63 0.47 1.71 16 13 C -0.11 -1.81 6.31 31.19 0.20 -1.62 16 14 C -0.08 -2.00 0.79 -51.80 -0.04 -2.04 16 15 C -0.10 -2.54 5.90 31.63 0.19 -2.36 16 16 C 0.10 3.93 4.69 86.92 0.41 4.33 16 17 N -0.63 -30.25 3.13 -692.24 -2.17 -32.42 16 18 C -0.24 -13.97 10.58 84.03 0.89 -13.08 16 19 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 20 C -0.03 -1.93 5.46 84.86 0.46 -1.47 16 21 N -0.96 -61.65 13.97 21.65 0.30 -61.34 16 22 Si 0.95 48.39 24.34 68.60 1.67 50.06 16 23 H -0.26 -12.20 6.77 99.48 0.67 -11.52 16 24 H -0.31 -15.88 7.11 99.48 0.71 -15.17 16 25 H -0.28 -13.96 6.68 99.48 0.66 -13.29 16 26 C 0.15 5.68 6.37 86.19 0.55 6.22 16 27 C 0.12 3.38 6.01 86.05 0.52 3.90 16 28 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 29 H 0.10 1.49 8.08 -2.39 -0.02 1.48 16 30 H 0.08 2.16 5.48 -2.38 -0.01 2.14 16 31 H 0.17 1.76 8.06 -2.91 -0.02 1.73 16 32 H 0.43 0.88 9.06 -74.06 -0.67 0.21 16 33 H 0.19 2.25 6.17 -2.91 -0.02 2.23 16 34 H 0.10 1.08 5.77 -2.39 -0.01 1.06 16 35 H 0.12 0.85 8.12 -2.39 -0.02 0.83 16 36 H 0.07 1.33 7.41 -2.39 -0.02 1.32 16 37 H 0.12 1.27 7.62 -2.39 -0.02 1.25 16 38 H 0.09 2.16 7.90 -2.39 -0.02 2.14 16 39 H 0.11 2.04 7.65 -2.39 -0.02 2.02 16 40 H 0.02 0.64 5.30 -2.39 -0.01 0.63 16 41 H 0.04 1.78 7.31 -2.39 -0.02 1.76 16 42 H 0.26 16.06 8.31 -92.70 -0.77 15.29 16 43 H 0.04 1.41 7.49 -2.39 -0.02 1.40 16 44 H 0.00 0.21 7.63 -2.38 -0.02 0.20 16 45 H 0.10 2.23 7.59 -2.39 -0.02 2.21 16 46 H 0.04 1.64 7.47 -2.38 -0.02 1.62 16 Total: -1.00 -83.93 358.84 -0.70 -84.63 By element: Atomic # 1 Polarization: 4.18 SS G_CDS: 0.28 Total: 4.46 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 6.36 Total: 12.88 kcal Atomic # 7 Polarization: -116.13 SS G_CDS: -7.76 Total: -123.89 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -1.25 Total: -28.14 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 1.67 Total: 50.06 kcal Total: -83.93 -0.70 -84.63 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041666197.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.890 kcal (2) G-P(sol) polarization free energy of solvation -83.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.634 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds