Wall clock time and date at job start Tue Mar 31 2020 16:06:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38348 * 119.41013 * 2 1 4 4 C 1.38342 * 119.46023 * 180.02562 * 3 2 1 5 5 C 1.39998 * 118.34536 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59397 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99513 * 133.79752 * 6 5 4 8 8 N 1.34767 * 120.00182 * 313.79333 * 6 5 4 9 9 C 1.47172 * 125.59615 * 4.87760 * 8 6 5 10 10 C 1.54657 * 107.35379 * 180.88414 * 9 8 6 11 11 C 1.53306 * 102.71892 * 20.50492 * 10 9 8 12 12 C 1.53303 * 112.22251 * 88.17594 * 11 10 9 13 13 C 1.54662 * 102.71652 * 155.00540 * 12 11 10 14 14 N 1.47160 * 107.35084 * 339.48980 * 13 12 11 15 15 C 1.36937 * 125.59402 * 179.11827 * 14 13 12 16 16 H 1.08003 * 120.00247 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99870 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47350 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47278 * 120.00309 * 19 17 15 22 22 H 1.48508 * 109.47197 * 239.99779 * 19 17 15 23 23 C 1.47790 * 108.81373 * 359.10387 * 14 13 12 24 24 C 1.47787 * 125.59562 * 184.56497 * 8 6 5 25 25 C 1.40281 * 118.80401 * 359.97438 * 5 4 3 26 26 O 1.35424 * 119.79522 * 179.97438 * 25 5 4 27 27 N 1.31882 * 119.40043 * 180.27371 * 2 1 3 28 28 H 1.08998 * 109.47051 * 89.99815 * 1 2 3 29 29 H 1.08994 * 109.47149 * 210.00374 * 1 2 3 30 30 H 1.09003 * 109.46845 * 330.00268 * 1 2 3 31 31 H 1.08000 * 120.27440 * 0.04602 * 3 2 1 32 32 H 1.07991 * 120.82809 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.86288 * 300.32519 * 9 8 6 34 34 H 1.08994 * 109.86804 * 61.29885 * 9 8 6 35 35 H 1.08995 * 110.76754 * 138.81340 * 10 9 8 36 36 H 1.09007 * 110.75716 * 262.01546 * 10 9 8 37 37 H 1.08999 * 110.76206 * 273.30982 * 12 11 10 38 38 H 1.08998 * 110.76284 * 36.51275 * 12 11 10 39 39 H 1.09003 * 109.86842 * 98.93591 * 13 12 11 40 40 H 1.09005 * 109.86737 * 219.90981 * 13 12 11 41 41 H 0.96997 * 120.00394 * 179.97438 * 18 17 15 42 42 H 1.08997 * 110.39689 * 263.36875 * 23 14 13 43 43 H 1.09002 * 110.39867 * 140.95922 * 23 14 13 44 44 H 1.08997 * 110.40322 * 276.64526 * 24 8 6 45 45 H 1.09009 * 110.40080 * 39.05745 * 24 8 6 46 46 H 0.96703 * 114.00453 * 90.00319 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.2356 -0.0251 -0.0016 6 6 5.7097 -0.0817 -0.0028 7 8 6.2898 -0.8337 0.7565 8 7 6.4134 0.6999 -0.8455 9 6 5.8473 1.7222 -1.7400 10 6 7.0218 2.3459 -2.5296 11 6 8.1150 1.2780 -2.4080 12 6 8.0299 0.2314 -3.5250 13 6 9.4821 -0.2938 -3.6108 14 7 10.3535 0.7238 -3.0018 15 6 11.7128 0.6306 -2.8654 16 1 12.2655 1.4350 -2.4027 17 6 12.3805 -0.4975 -3.3218 18 7 11.7070 -1.4780 -3.8852 19 14 14.2349 -0.6243 -3.1363 20 1 14.7512 0.6009 -2.4748 21 1 14.5697 -1.8113 -2.3092 22 1 14.8582 -0.7636 -4.4771 23 6 9.5209 1.8628 -2.5620 24 6 7.8810 0.6756 -1.0182 25 6 3.4757 -1.2043 -0.0016 26 8 4.0990 -2.4066 -0.0031 27 7 2.1545 -1.1490 -0.0055 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6413 2.1375 0.0007 32 1 4.1224 2.1342 -0.0001 33 1 5.1408 1.2605 -2.4299 34 1 5.3435 2.4901 -1.1530 35 1 6.7471 2.5006 -3.5729 36 1 7.3403 3.2828 -2.0724 37 1 7.3444 -0.5707 -3.2515 38 1 7.7268 0.6930 -4.4648 39 1 9.5695 -1.2323 -3.0632 40 1 9.7598 -0.4463 -4.6537 41 1 12.1736 -2.2662 -4.2044 42 1 9.5246 2.6497 -3.3162 43 1 9.8786 2.2487 -1.6074 44 1 8.3638 1.2823 -0.2521 45 1 8.2510 -0.3491 -0.9816 46 1 4.2810 -2.7565 0.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041711419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:39 Heat of formation + Delta-G solvation = -1.487801 kcal Electronic energy + Delta-G solvation = -28821.700054 eV Core-core repulsion = 24905.637856 eV Total energy + Delta-G solvation = -3916.062198 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16732 -39.96050 -38.25112 -37.38721 -35.69832 -33.57995 -32.49089 -31.92418 -30.63757 -29.14825 -28.67875 -28.04418 -25.68007 -24.27489 -23.64823 -23.02646 -22.30163 -20.29226 -19.96313 -18.92317 -18.76708 -17.40690 -17.18593 -16.62155 -16.06309 -15.85367 -15.50142 -14.95257 -14.76283 -14.47734 -14.29413 -13.99855 -13.83484 -13.50018 -13.28307 -12.99422 -12.81287 -12.58476 -12.54119 -12.38630 -12.00885 -11.95528 -11.85857 -11.71430 -11.36963 -11.18849 -10.87558 -10.76965 -10.35093 -10.23873 -10.19472 -10.01696 -9.92767 -9.76076 -9.62220 -9.59193 -9.11003 -8.58458 -8.55989 -6.81591 -5.68630 -3.02529 0.39215 0.78598 2.58905 2.91692 3.18687 3.41921 3.46478 3.47168 3.49861 4.12938 4.24038 4.37194 4.51531 4.60903 4.62658 4.79814 4.89641 4.99729 5.04357 5.17552 5.20162 5.25571 5.34827 5.44785 5.52934 5.55520 5.60191 5.66298 5.81570 5.87961 5.90043 5.98211 6.06745 6.12494 6.18098 6.28497 6.34583 6.51320 6.58706 6.71382 6.77951 7.27171 7.49586 7.58353 7.59136 7.64568 7.85684 8.11125 8.27322 9.23826 9.84036 10.49580 11.42954 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002762 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.021543 B =10133.618802 C =10648.236794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.167 3.833 3 C -0.189 4.189 4 C -0.031 4.031 5 C -0.196 4.196 6 C 0.583 3.417 7 O -0.529 6.529 8 N -0.609 5.609 9 C 0.099 3.901 10 C -0.117 4.117 11 C -0.083 4.083 12 C -0.129 4.129 13 C 0.179 3.821 14 N -0.605 5.605 15 C -0.228 4.228 16 H 0.078 0.922 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.911 3.089 20 H -0.280 1.280 21 H -0.291 1.291 22 H -0.291 1.291 23 C 0.152 3.848 24 C 0.132 3.868 25 C 0.369 3.631 26 O -0.470 6.470 27 N -0.506 5.506 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.084 0.916 36 H 0.078 0.922 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.043 0.957 41 H 0.252 0.748 42 H 0.025 0.975 43 H 0.041 0.959 44 H 0.069 0.931 45 H 0.086 0.914 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.159 8.897 6.842 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.029 3.971 3 C -0.209 4.209 4 C -0.056 4.056 5 C -0.203 4.203 6 C 0.370 3.630 7 O -0.406 6.406 8 N -0.342 5.342 9 C -0.023 4.023 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.168 4.168 13 C 0.054 3.946 14 N -0.332 5.332 15 C -0.356 4.356 16 H 0.096 0.904 17 C -0.205 4.205 18 N -0.568 5.568 19 Si 0.742 3.258 20 H -0.205 1.205 21 H -0.218 1.218 22 H -0.218 1.218 23 C 0.026 3.974 24 C 0.011 3.989 25 C 0.188 3.812 26 O -0.279 6.279 27 N -0.226 5.226 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.162 0.838 32 H 0.165 0.835 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.064 0.936 40 H 0.061 0.939 41 H 0.062 0.938 42 H 0.043 0.957 43 H 0.059 0.941 44 H 0.088 0.912 45 H 0.105 0.895 46 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -23.128 7.511 6.652 25.210 hybrid contribution 1.501 0.510 0.420 1.640 sum -21.626 8.021 7.072 24.126 Atomic orbital electron populations 1.20816 0.88153 1.03901 1.03622 1.21254 0.97060 0.87215 0.91567 1.21885 0.94377 0.99562 1.05072 1.21832 0.94432 0.97181 0.92193 1.21049 0.94949 0.94585 1.09681 1.17387 0.85532 0.79854 0.80196 1.90803 1.70977 1.39303 1.39486 1.48571 1.08893 1.37012 1.39737 1.22275 0.97176 0.90317 0.92576 1.22427 0.94057 0.98348 1.00660 1.21642 0.96310 0.95868 0.94686 1.22659 1.00645 0.97265 0.96196 1.21219 0.83490 0.91737 0.98147 1.44595 1.02900 1.15885 1.69818 1.19081 0.80905 1.02155 1.33483 0.90390 1.24804 0.98084 0.96673 1.00893 1.69972 1.33574 1.08080 1.45177 0.86057 0.85098 0.77443 0.77227 1.20530 1.21770 1.21812 1.21208 0.87556 0.91332 0.97348 1.22048 0.77868 1.03017 0.95939 1.19029 0.86100 0.84912 0.91109 1.84670 1.76473 1.32210 1.34505 1.67115 1.09200 1.30452 1.15801 0.89801 0.90096 0.90168 0.83766 0.83547 0.91493 0.91646 0.89759 0.90353 0.92246 0.92133 0.93596 0.93907 0.93804 0.95734 0.94114 0.91239 0.89526 0.72940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.59 10.16 36.01 0.37 -0.23 16 2 C 0.17 1.52 6.78 -82.53 -0.56 0.96 16 3 C -0.19 -1.42 9.71 -39.50 -0.38 -1.81 16 4 C -0.03 -0.28 8.65 -38.88 -0.34 -0.62 16 5 C -0.20 -2.52 5.46 -104.69 -0.57 -3.09 16 6 C 0.58 9.23 7.18 -12.48 -0.09 9.14 16 7 O -0.53 -10.15 16.75 -6.16 -0.10 -10.25 16 8 N -0.61 -8.96 3.34 -172.14 -0.58 -9.54 16 9 C 0.10 1.09 5.62 -2.80 -0.02 1.08 16 10 C -0.12 -1.37 5.97 -25.70 -0.15 -1.52 16 11 C -0.08 -1.37 0.62 -154.03 -0.10 -1.46 16 12 C -0.13 -2.40 5.92 -25.70 -0.15 -2.55 16 13 C 0.18 4.35 5.38 -2.81 -0.02 4.34 16 14 N -0.61 -15.22 3.41 -170.60 -0.58 -15.80 16 15 C -0.23 -6.33 10.28 -15.06 -0.15 -6.49 16 16 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -27.40 10.30 55.49 0.57 -26.83 16 19 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 C 0.15 2.98 6.28 -3.31 -0.02 2.96 16 24 C 0.13 2.27 5.85 -3.19 -0.02 2.25 16 25 C 0.37 4.98 7.74 -16.61 -0.13 4.85 16 26 O -0.47 -6.59 12.54 -29.42 -0.37 -6.96 16 27 N -0.51 -6.22 10.28 -9.21 -0.09 -6.31 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.25 8.07 -51.93 -0.42 -0.16 16 31 H 0.14 0.59 8.06 -52.49 -0.42 0.17 16 32 H 0.15 1.04 5.88 -52.49 -0.31 0.73 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.07 0.53 5.93 -51.93 -0.31 0.23 16 35 H 0.08 0.90 7.78 -51.93 -0.40 0.50 16 36 H 0.08 0.81 8.08 -51.93 -0.42 0.39 16 37 H 0.06 1.10 8.01 -51.93 -0.42 0.68 16 38 H 0.06 1.03 7.82 -51.93 -0.41 0.62 16 39 H 0.05 1.27 7.39 -51.93 -0.38 0.88 16 40 H 0.04 1.16 7.49 -51.93 -0.39 0.77 16 41 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.03 0.47 8.07 -51.93 -0.42 0.05 16 43 H 0.04 0.78 7.80 -51.93 -0.41 0.37 16 44 H 0.07 1.16 7.85 -51.93 -0.41 0.76 16 45 H 0.09 1.79 8.00 -51.92 -0.42 1.38 16 46 H 0.41 4.18 9.06 45.56 0.41 4.59 16 LS Contribution 370.44 15.07 5.58 5.58 Total: -1.00 -35.30 370.44 -8.94 -44.25 By element: Atomic # 1 Polarization: 6.99 SS G_CDS: -5.93 Total: 1.07 kcal Atomic # 6 Polarization: 9.90 SS G_CDS: -2.42 Total: 7.47 kcal Atomic # 7 Polarization: -57.80 SS G_CDS: -0.68 Total: -58.48 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.47 Total: -17.21 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.30 -8.94 -44.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041711419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.758 kcal (2) G-P(sol) polarization free energy of solvation -35.303 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds