Wall clock time and date at job start Tue Mar 31 2020 16:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38348 * 119.41013 * 2 1 4 4 C 1.38342 * 119.46023 * 180.02562 * 3 2 1 5 5 C 1.39998 * 118.34536 * 0.02562 * 4 3 2 6 6 C 1.47521 * 120.59397 * 179.97438 * 5 4 3 7 7 O 1.21589 * 119.99513 * 133.79752 * 6 5 4 8 8 N 1.34767 * 120.00182 * 313.79333 * 6 5 4 9 9 C 1.47172 * 125.59615 * 4.87760 * 8 6 5 10 10 C 1.54657 * 107.35379 * 180.88414 * 9 8 6 11 11 C 1.53306 * 102.71892 * 20.50492 * 10 9 8 12 12 C 1.53303 * 112.22251 * 88.17594 * 11 10 9 13 13 C 1.54662 * 102.71652 * 155.00540 * 12 11 10 14 14 N 1.47160 * 107.35084 * 339.48980 * 13 12 11 15 15 C 1.36937 * 125.59402 * 179.11827 * 14 13 12 16 16 H 1.08003 * 120.00247 * 179.97438 * 15 14 13 17 17 C 1.38811 * 119.99870 * 359.97438 * 15 14 13 18 18 N 1.31615 * 120.00377 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99980 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47350 * 0.02562 * 19 17 15 21 21 H 1.48497 * 109.47278 * 120.00309 * 19 17 15 22 22 H 1.48508 * 109.47197 * 239.99779 * 19 17 15 23 23 C 1.47790 * 108.81373 * 359.10387 * 14 13 12 24 24 C 1.47787 * 125.59562 * 184.56497 * 8 6 5 25 25 C 1.40281 * 118.80401 * 359.97438 * 5 4 3 26 26 O 1.35424 * 119.79522 * 179.97438 * 25 5 4 27 27 N 1.31882 * 119.40043 * 180.27371 * 2 1 3 28 28 H 1.08998 * 109.47051 * 89.99815 * 1 2 3 29 29 H 1.08994 * 109.47149 * 210.00374 * 1 2 3 30 30 H 1.09003 * 109.46845 * 330.00268 * 1 2 3 31 31 H 1.08000 * 120.27440 * 0.04602 * 3 2 1 32 32 H 1.07991 * 120.82809 * 180.02562 * 4 3 2 33 33 H 1.09006 * 109.86288 * 300.32519 * 9 8 6 34 34 H 1.08994 * 109.86804 * 61.29885 * 9 8 6 35 35 H 1.08995 * 110.76754 * 138.81340 * 10 9 8 36 36 H 1.09007 * 110.75716 * 262.01546 * 10 9 8 37 37 H 1.08999 * 110.76206 * 273.30982 * 12 11 10 38 38 H 1.08998 * 110.76284 * 36.51275 * 12 11 10 39 39 H 1.09003 * 109.86842 * 98.93591 * 13 12 11 40 40 H 1.09005 * 109.86737 * 219.90981 * 13 12 11 41 41 H 0.96997 * 120.00394 * 179.97438 * 18 17 15 42 42 H 1.08997 * 110.39689 * 263.36875 * 23 14 13 43 43 H 1.09002 * 110.39867 * 140.95922 * 23 14 13 44 44 H 1.08997 * 110.40322 * 276.64526 * 24 8 6 45 45 H 1.09009 * 110.40080 * 39.05745 * 24 8 6 46 46 H 0.96703 * 114.00453 * 90.00319 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2052 0.0000 4 6 3.5698 1.2064 -0.0005 5 6 4.2356 -0.0251 -0.0016 6 6 5.7097 -0.0817 -0.0028 7 8 6.2898 -0.8337 0.7565 8 7 6.4134 0.6999 -0.8455 9 6 5.8473 1.7222 -1.7400 10 6 7.0218 2.3459 -2.5296 11 6 8.1150 1.2780 -2.4080 12 6 8.0299 0.2314 -3.5250 13 6 9.4821 -0.2938 -3.6108 14 7 10.3535 0.7238 -3.0018 15 6 11.7128 0.6306 -2.8654 16 1 12.2655 1.4350 -2.4027 17 6 12.3805 -0.4975 -3.3218 18 7 11.7070 -1.4780 -3.8852 19 14 14.2349 -0.6243 -3.1363 20 1 14.7512 0.6009 -2.4748 21 1 14.5697 -1.8113 -2.3092 22 1 14.8582 -0.7636 -4.4771 23 6 9.5209 1.8628 -2.5620 24 6 7.8810 0.6756 -1.0182 25 6 3.4757 -1.2043 -0.0016 26 8 4.0990 -2.4066 -0.0031 27 7 2.1545 -1.1490 -0.0055 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.6413 2.1375 0.0007 32 1 4.1224 2.1342 -0.0001 33 1 5.1408 1.2605 -2.4299 34 1 5.3435 2.4901 -1.1530 35 1 6.7471 2.5006 -3.5729 36 1 7.3403 3.2828 -2.0724 37 1 7.3444 -0.5707 -3.2515 38 1 7.7268 0.6930 -4.4648 39 1 9.5695 -1.2323 -3.0632 40 1 9.7598 -0.4463 -4.6537 41 1 12.1736 -2.2662 -4.2044 42 1 9.5246 2.6497 -3.3162 43 1 9.8786 2.2487 -1.6074 44 1 8.3638 1.2823 -0.2521 45 1 8.2510 -0.3491 -0.9816 46 1 4.2810 -2.7565 0.8798 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041711419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:38 Heat of formation + Delta-G solvation = -28.850791 kcal Electronic energy + Delta-G solvation = -28822.886602 eV Core-core repulsion = 24905.637856 eV Total energy + Delta-G solvation = -3917.248747 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.11275 -41.11217 -39.55222 -38.34152 -37.21793 -34.76913 -33.96208 -32.63620 -32.12503 -30.75341 -29.93604 -29.01355 -27.27351 -25.86130 -24.43821 -24.13839 -23.23910 -22.17284 -21.04690 -20.31091 -19.67017 -18.92777 -18.30794 -17.94631 -17.02550 -16.92912 -16.78045 -16.53769 -16.10510 -15.64157 -15.61625 -15.12508 -14.85321 -14.62542 -14.38788 -14.23776 -13.95789 -13.84973 -13.57406 -13.42989 -13.13231 -13.04681 -13.01244 -12.97366 -12.82459 -12.70674 -12.58258 -12.47166 -11.99715 -11.87451 -11.60398 -11.44113 -11.35365 -11.23323 -10.99025 -10.72737 -10.51401 -9.91036 -9.70011 -8.89592 -7.85167 -5.20483 -0.41210 0.06704 1.43608 1.45390 1.47514 1.55353 1.85328 2.38388 2.48694 2.66226 3.21220 3.34029 3.47583 3.53600 3.63152 3.68415 3.74751 3.79566 3.96722 4.20182 4.26954 4.27108 4.36769 4.40746 4.56204 4.58079 4.67437 4.74020 4.78451 4.83346 4.88949 4.92221 4.96929 4.98786 5.03936 5.04957 5.16320 5.21305 5.29617 5.35661 5.45943 5.52242 5.63555 5.75329 6.18550 6.37770 6.42393 6.80806 6.94082 7.09115 7.77592 8.41829 9.25574 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.023844 B = 0.002762 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.021543 B =10133.618802 C =10648.236794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.159 3.841 3 C -0.168 4.168 4 C -0.023 4.023 5 C -0.215 4.215 6 C 0.577 3.423 7 O -0.580 6.580 8 N -0.608 5.608 9 C 0.095 3.905 10 C -0.104 4.104 11 C -0.073 4.073 12 C -0.112 4.112 13 C 0.188 3.812 14 N -0.628 5.628 15 C -0.235 4.235 16 H 0.088 0.912 17 C -0.073 4.073 18 N -0.955 5.955 19 Si 0.977 3.023 20 H -0.261 1.261 21 H -0.298 1.298 22 H -0.292 1.292 23 C 0.148 3.852 24 C 0.136 3.864 25 C 0.342 3.658 26 O -0.496 6.496 27 N -0.532 5.532 28 H 0.095 0.905 29 H 0.071 0.929 30 H 0.113 0.887 31 H 0.193 0.807 32 H 0.176 0.824 33 H 0.076 0.924 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.105 0.895 37 H 0.054 0.946 38 H 0.087 0.913 39 H -0.005 1.005 40 H 0.006 0.994 41 H 0.244 0.756 42 H 0.046 0.954 43 H 0.047 0.953 44 H 0.072 0.928 45 H 0.034 0.966 46 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.096 13.480 6.956 30.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.021 3.979 3 C -0.188 4.188 4 C -0.048 4.048 5 C -0.221 4.221 6 C 0.367 3.633 7 O -0.461 6.461 8 N -0.340 5.340 9 C -0.026 4.026 10 C -0.141 4.141 11 C -0.075 4.075 12 C -0.150 4.150 13 C 0.063 3.937 14 N -0.354 5.354 15 C -0.364 4.364 16 H 0.105 0.895 17 C -0.265 4.265 18 N -0.605 5.605 19 Si 0.806 3.194 20 H -0.185 1.185 21 H -0.225 1.225 22 H -0.219 1.219 23 C 0.023 3.977 24 C 0.014 3.986 25 C 0.163 3.837 26 O -0.305 6.305 27 N -0.252 5.252 28 H 0.114 0.886 29 H 0.090 0.910 30 H 0.131 0.869 31 H 0.210 0.790 32 H 0.193 0.807 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.124 0.876 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.013 0.987 40 H 0.024 0.976 41 H 0.053 0.947 42 H 0.064 0.936 43 H 0.065 0.935 44 H 0.091 0.909 45 H 0.052 0.948 46 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -26.103 12.166 6.762 29.582 hybrid contribution 2.316 -0.885 0.422 2.515 sum -23.787 11.281 7.184 27.289 Atomic orbital electron populations 1.20961 0.85557 1.05134 1.04661 1.22048 0.98800 0.87039 0.89982 1.22374 0.93648 1.00698 1.02039 1.22166 0.95344 0.96426 0.90855 1.20841 0.92733 0.96106 1.12443 1.17960 0.86947 0.78983 0.79459 1.90762 1.72293 1.41345 1.41696 1.48616 1.07687 1.37742 1.39932 1.22605 0.97095 0.90216 0.92652 1.22474 0.91678 0.97352 1.02635 1.21500 0.96508 0.96553 0.92952 1.22461 0.96095 0.97906 0.98565 1.20894 0.87319 0.90509 0.94969 1.44907 1.02833 1.17711 1.69967 1.19533 0.82594 1.02074 1.32209 0.89469 1.25690 1.02595 0.96723 1.01539 1.70222 1.34991 1.08502 1.46764 0.85015 0.79911 0.77602 0.76873 1.18485 1.22537 1.21895 1.21465 0.88285 0.90081 0.97852 1.21786 0.79957 1.00027 0.96852 1.19230 0.86866 0.84755 0.92869 1.84616 1.76989 1.33355 1.35586 1.67147 1.08577 1.32569 1.16945 0.88649 0.90958 0.86895 0.78984 0.80699 0.90607 0.87331 0.87527 0.87624 0.92763 0.89447 0.98661 0.97565 0.94693 0.93606 0.93465 0.90943 0.94767 0.72153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.16 71.24 0.72 -0.05 16 2 C 0.16 2.39 6.78 42.58 0.29 2.68 16 3 C -0.17 -1.67 9.71 22.32 0.22 -1.45 16 4 C -0.02 -0.32 8.65 22.72 0.20 -0.13 16 5 C -0.21 -5.31 5.46 -19.91 -0.11 -5.42 16 6 C 0.58 18.53 7.18 86.69 0.62 19.15 16 7 O -0.58 -23.83 16.75 6.95 0.12 -23.71 16 8 N -0.61 -17.24 3.34 -816.80 -2.73 -19.97 16 9 C 0.10 1.67 5.62 86.82 0.49 2.16 16 10 C -0.10 -1.92 5.97 31.26 0.19 -1.73 16 11 C -0.07 -2.30 0.62 -51.87 -0.03 -2.33 16 12 C -0.11 -4.16 5.92 31.26 0.19 -3.98 16 13 C 0.19 9.72 5.38 86.82 0.47 10.19 16 14 N -0.63 -32.37 3.41 -693.66 -2.37 -34.74 16 15 C -0.23 -13.34 10.28 84.03 0.86 -12.48 16 16 H 0.09 4.66 7.83 -2.91 -0.02 4.64 16 17 C -0.07 -4.30 5.49 84.86 0.47 -3.84 16 18 N -0.96 -60.24 10.30 21.65 0.22 -60.02 16 19 Si 0.98 47.30 29.55 68.60 2.03 49.33 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 23 C 0.15 5.59 6.28 86.15 0.54 6.13 16 24 C 0.14 4.73 5.85 86.23 0.50 5.24 16 25 C 0.34 9.41 7.74 85.13 0.66 10.07 16 26 O -0.50 -15.15 12.54 -76.24 -0.96 -16.10 16 27 N -0.53 -12.69 10.28 -296.06 -3.04 -15.74 16 28 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.11 0.10 8.07 -2.39 -0.02 0.08 16 31 H 0.19 0.10 8.06 -2.91 -0.02 0.07 16 32 H 0.18 1.40 5.88 -2.92 -0.02 1.38 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.11 1.04 5.93 -2.39 -0.01 1.03 16 35 H 0.11 1.62 7.78 -2.39 -0.02 1.60 16 36 H 0.11 1.50 8.08 -2.38 -0.02 1.48 16 37 H 0.05 2.07 8.01 -2.39 -0.02 2.05 16 38 H 0.09 2.79 7.82 -2.39 -0.02 2.77 16 39 H 0.00 -0.30 7.39 -2.39 -0.02 -0.31 16 40 H 0.01 0.35 7.49 -2.38 -0.02 0.34 16 41 H 0.24 15.01 8.31 -92.71 -0.77 14.24 16 42 H 0.05 1.59 8.07 -2.39 -0.02 1.57 16 43 H 0.05 1.73 7.80 -2.39 -0.02 1.71 16 44 H 0.07 2.44 7.85 -2.39 -0.02 2.42 16 45 H 0.03 1.53 8.00 -2.38 -0.02 1.51 16 46 H 0.42 9.92 9.06 -74.06 -0.67 9.25 16 Total: -1.00 -86.60 370.44 -0.12 -86.72 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.34 Total: 10.01 kcal Atomic # 6 Polarization: 17.94 SS G_CDS: 6.27 Total: 24.21 kcal Atomic # 7 Polarization: -122.55 SS G_CDS: -7.91 Total: -130.47 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.84 Total: -39.81 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -86.60 -0.12 -86.72 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041711419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.872 kcal (2) G-P(sol) polarization free energy of solvation -86.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds