Wall clock time and date at job start Tue Mar 31 2020 16:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38363 * 119.40412 * 2 1 4 4 C 1.38333 * 119.45530 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.35141 * 359.97438 * 4 3 2 6 6 C 1.47521 * 120.59684 * 179.97438 * 5 4 3 7 7 O 1.21592 * 119.99914 * 141.83978 * 6 5 4 8 8 N 1.34778 * 120.00365 * 321.84321 * 6 5 4 9 9 C 1.47565 * 125.67187 * 354.60493 * 8 6 5 10 10 C 1.55181 * 105.00538 * 203.85989 * 9 8 6 11 11 C 1.53722 * 101.43893 * 324.52446 * 10 9 8 12 12 C 1.53665 * 111.40335 * 272.72625 * 11 10 9 13 13 C 1.55184 * 101.41430 * 272.69481 * 12 11 10 14 14 N 1.47556 * 105.00918 * 324.50842 * 13 12 11 15 15 C 1.36933 * 125.67371 * 203.86209 * 14 13 12 16 16 H 1.08006 * 120.00346 * 169.19326 * 15 14 13 17 17 C 1.38818 * 120.00199 * 349.19532 * 15 14 13 18 18 N 1.31621 * 119.99512 * 350.26740 * 17 15 14 19 19 Si 1.86798 * 120.00126 * 170.27296 * 17 15 14 20 20 H 1.48500 * 109.47242 * 94.96711 * 19 17 15 21 21 H 1.48503 * 109.46906 * 214.96660 * 19 17 15 22 22 H 1.48499 * 109.47123 * 334.96469 * 19 17 15 23 23 C 1.47406 * 108.65255 * 23.85654 * 14 13 12 24 24 C 1.47407 * 125.67590 * 174.60450 * 8 6 5 25 25 C 1.40283 * 118.80549 * 0.27499 * 5 4 3 26 26 O 1.35421 * 119.79774 * 179.70211 * 25 5 4 27 27 N 1.31873 * 119.40825 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46736 * 90.00372 * 1 2 3 29 29 H 1.08993 * 109.46793 * 210.00096 * 1 2 3 30 30 H 1.09001 * 109.47153 * 330.00436 * 1 2 3 31 31 H 1.07996 * 120.27204 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.82315 * 179.97438 * 4 3 2 33 33 H 1.09002 * 110.33372 * 322.74417 * 9 8 6 34 34 H 1.09003 * 110.33438 * 84.87337 * 9 8 6 35 35 H 1.08999 * 111.03389 * 82.53703 * 10 9 8 36 36 H 1.09000 * 111.03249 * 206.42907 * 10 9 8 37 37 H 1.08999 * 111.03144 * 30.73088 * 12 11 10 38 38 H 1.08996 * 111.03079 * 154.66431 * 12 11 10 39 39 H 1.08995 * 110.33545 * 205.62282 * 13 12 11 40 40 H 1.09001 * 110.41902 * 83.43150 * 13 12 11 41 41 H 0.96997 * 119.99465 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.98818 * 238.54828 * 23 14 13 43 43 H 1.08999 * 109.98719 * 117.24308 * 23 14 13 44 44 H 1.08997 * 109.98658 * 297.24337 * 24 8 6 45 45 H 1.08995 * 109.98278 * 58.50942 * 24 8 6 46 46 H 0.96698 * 113.99776 * 90.00208 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2356 -0.0248 0.0016 6 6 5.7097 -0.0813 0.0017 7 8 6.2855 -0.9313 0.6530 8 7 6.4183 0.8094 -0.7202 9 6 5.8533 1.8166 -1.6388 10 6 6.9976 2.1370 -2.6369 11 6 8.2324 2.0393 -1.7265 12 6 8.5240 3.3784 -1.0315 13 6 9.4151 4.0848 -2.0875 14 7 10.2188 3.0055 -2.6929 15 6 11.4288 3.1633 -3.3141 16 1 12.0211 2.2974 -3.5709 17 6 11.8944 4.4363 -3.6139 18 7 11.0992 5.4764 -3.4793 19 14 13.6493 4.6729 -4.2086 20 1 13.6695 4.7003 -5.6932 21 1 14.1814 5.9557 -3.6826 22 1 14.4921 3.5510 -3.7227 23 6 9.5024 1.7292 -2.5176 24 6 7.8866 0.9395 -0.7235 25 6 3.4759 -1.2040 -0.0038 26 8 4.0993 -2.4062 -0.0090 27 7 2.1546 -1.1488 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1345 0.0001 33 1 4.9930 1.4064 -2.1678 34 1 5.5666 2.7127 -1.0885 35 1 7.0404 1.3951 -3.4343 36 1 6.8903 3.1417 -3.0456 37 1 7.6046 3.9376 -0.8582 38 1 9.0684 3.2251 -0.0997 39 1 10.0644 4.8165 -1.6068 40 1 8.7973 4.5674 -2.8448 41 1 11.4246 6.3659 -3.6884 42 1 10.1241 1.0261 -1.9634 43 1 9.2427 1.3111 -3.4901 44 1 8.2382 1.2174 0.2701 45 1 8.3433 -0.0014 -1.0302 46 1 4.2801 -2.7592 0.8729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001041711420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:43 Heat of formation + Delta-G solvation = -4.347368 kcal Electronic energy + Delta-G solvation = -28538.730654 eV Core-core repulsion = 24622.544456 eV Total energy + Delta-G solvation = -3916.186199 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.22716 -40.00989 -38.34995 -37.44605 -35.73146 -33.63741 -32.53097 -31.96127 -30.47675 -29.29583 -28.80839 -28.14511 -25.67757 -24.08339 -23.72552 -22.97964 -22.56428 -20.35025 -20.03254 -18.94250 -18.81479 -17.44256 -17.08746 -16.74043 -16.22948 -15.98845 -15.52212 -15.03482 -14.73737 -14.37220 -14.32590 -13.89444 -13.84783 -13.59558 -13.30431 -12.96852 -12.83722 -12.68095 -12.57723 -12.54184 -12.40468 -11.92711 -11.91639 -11.56318 -11.38227 -11.25558 -10.86580 -10.79046 -10.39688 -10.25233 -10.24853 -10.04797 -10.01659 -9.80985 -9.72043 -9.64537 -9.16884 -8.66111 -8.59983 -6.82212 -5.77780 -3.09764 0.31089 0.75051 2.55013 2.82847 3.14736 3.38134 3.42010 3.44428 3.46416 4.08188 4.24184 4.33561 4.47320 4.56966 4.64979 4.75717 4.92125 4.97071 5.00434 5.14868 5.17104 5.22440 5.31092 5.41444 5.46575 5.52484 5.57217 5.62598 5.72918 5.79126 5.91884 5.97977 6.02969 6.09419 6.17711 6.20506 6.28901 6.49121 6.53165 6.70872 6.79739 7.21175 7.40428 7.44869 7.52889 7.54047 7.75241 8.02170 8.22659 9.16804 9.78317 10.46139 11.35665 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029328 B = 0.002462 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.505435 B =11368.866076 C =11944.116951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.170 3.830 3 C -0.190 4.190 4 C -0.027 4.027 5 C -0.201 4.201 6 C 0.583 3.417 7 O -0.532 6.532 8 N -0.609 5.609 9 C 0.097 3.903 10 C -0.113 4.113 11 C -0.080 4.080 12 C -0.133 4.133 13 C 0.176 3.824 14 N -0.602 5.602 15 C -0.228 4.228 16 H 0.076 0.924 17 C -0.007 4.007 18 N -0.919 5.919 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C 0.151 3.849 24 C 0.126 3.874 25 C 0.370 3.630 26 O -0.470 6.470 27 N -0.508 5.508 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.146 0.854 32 H 0.148 0.852 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.092 0.908 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.066 0.934 40 H 0.028 0.972 41 H 0.252 0.748 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.072 0.928 45 H 0.072 0.928 46 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.495 -6.680 8.112 23.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.032 3.968 3 C -0.209 4.209 4 C -0.052 4.052 5 C -0.207 4.207 6 C 0.371 3.629 7 O -0.410 6.410 8 N -0.342 5.342 9 C -0.026 4.026 10 C -0.151 4.151 11 C -0.081 4.081 12 C -0.171 4.171 13 C 0.051 3.949 14 N -0.328 5.328 15 C -0.356 4.356 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.566 5.566 19 Si 0.740 3.260 20 H -0.216 1.216 21 H -0.216 1.216 22 H -0.206 1.206 23 C 0.025 3.975 24 C 0.004 3.996 25 C 0.190 3.810 26 O -0.278 6.278 27 N -0.228 5.228 28 H 0.103 0.897 29 H 0.099 0.901 30 H 0.099 0.901 31 H 0.164 0.836 32 H 0.166 0.834 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.084 0.916 40 H 0.046 0.954 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.045 0.955 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -21.505 -7.788 7.838 24.177 hybrid contribution 1.442 0.904 0.022 1.702 sum -20.063 -6.884 7.860 22.621 Atomic orbital electron populations 1.20829 0.88098 1.03961 1.03673 1.21277 0.97093 0.87204 0.91231 1.21923 0.94422 0.99635 1.04956 1.21897 0.94486 0.97360 0.91486 1.21032 0.94802 0.94542 1.10347 1.17409 0.85583 0.80484 0.79444 1.90775 1.71308 1.35522 1.43392 1.48528 1.08137 1.34140 1.43370 1.22620 0.97569 0.91131 0.91269 1.22659 0.92478 1.03381 0.96592 1.21532 0.96004 0.95494 0.95110 1.22912 1.00005 0.94774 0.99447 1.21431 0.91697 0.90407 0.91369 1.44567 1.20382 1.01433 1.66453 1.19020 0.92571 0.92587 1.31467 0.90659 1.24815 0.98533 0.95822 1.01198 1.69951 1.34095 0.98262 1.54258 0.86135 0.84276 0.77274 0.78288 1.21636 1.21631 1.20582 1.21059 0.89867 0.90571 0.96034 1.21898 0.78578 0.99263 0.99831 1.19045 0.86111 0.84912 0.90964 1.84650 1.76501 1.32179 1.34507 1.67120 1.09207 1.30484 1.15983 0.89741 0.90086 0.90082 0.83644 0.83422 0.90897 0.91108 0.90495 0.88987 0.92069 0.91874 0.91607 0.95379 0.93742 0.95464 0.95523 0.91003 0.90981 0.73010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.57 10.16 36.01 0.37 -0.20 16 2 C 0.17 1.48 6.78 -82.53 -0.56 0.92 16 3 C -0.19 -1.40 9.71 -39.50 -0.38 -1.78 16 4 C -0.03 -0.24 8.35 -38.89 -0.32 -0.56 16 5 C -0.20 -2.43 5.38 -104.69 -0.56 -2.99 16 6 C 0.58 8.51 7.33 -12.48 -0.09 8.41 16 7 O -0.53 -9.26 16.44 -10.96 -0.18 -9.44 16 8 N -0.61 -8.32 3.34 -172.08 -0.58 -8.90 16 9 C 0.10 1.09 5.16 -2.30 -0.01 1.08 16 10 C -0.11 -1.55 5.89 -25.20 -0.15 -1.70 16 11 C -0.08 -1.29 0.62 -153.99 -0.10 -1.38 16 12 C -0.13 -2.27 5.89 -25.23 -0.15 -2.42 16 13 C 0.18 4.00 5.30 -2.31 -0.01 3.99 16 14 N -0.60 -14.88 3.41 -170.41 -0.58 -15.46 16 15 C -0.23 -6.26 10.24 -15.06 -0.15 -6.41 16 16 H 0.08 2.02 7.85 -52.48 -0.41 1.61 16 17 C -0.01 -0.20 5.40 -17.43 -0.09 -0.29 16 18 N -0.92 -26.37 10.72 55.49 0.60 -25.78 16 19 Si 0.91 21.83 29.56 -169.99 -5.03 16.81 16 20 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 23 C 0.15 3.03 6.42 -3.65 -0.02 3.00 16 24 C 0.13 1.90 6.05 -3.64 -0.02 1.88 16 25 C 0.37 4.65 7.74 -16.61 -0.13 4.52 16 26 O -0.47 -5.96 12.31 -34.20 -0.42 -6.38 16 27 N -0.51 -5.89 10.28 -9.21 -0.09 -5.99 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.08 0.25 8.07 -51.93 -0.42 -0.17 16 31 H 0.15 0.62 8.06 -52.49 -0.42 0.19 16 32 H 0.15 1.09 6.02 -52.49 -0.32 0.78 16 33 H 0.07 0.74 7.36 -51.93 -0.38 0.36 16 34 H 0.07 0.67 6.92 -51.93 -0.36 0.31 16 35 H 0.08 1.07 7.80 -51.93 -0.40 0.66 16 36 H 0.09 1.28 7.89 -51.93 -0.41 0.87 16 37 H 0.06 0.90 7.88 -51.93 -0.41 0.49 16 38 H 0.06 1.08 7.79 -51.93 -0.40 0.68 16 39 H 0.07 1.70 7.01 -51.93 -0.36 1.33 16 40 H 0.03 0.69 8.00 -51.93 -0.42 0.27 16 41 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.03 0.55 7.78 -51.93 -0.40 0.15 16 43 H 0.03 0.54 7.61 -51.93 -0.40 0.15 16 44 H 0.07 1.09 7.61 -51.93 -0.40 0.70 16 45 H 0.07 1.14 7.78 -51.93 -0.40 0.74 16 46 H 0.41 3.62 9.06 45.56 0.41 4.04 16 LS Contribution 368.88 15.07 5.56 5.56 Total: -1.00 -34.03 368.88 -9.00 -43.03 By element: Atomic # 1 Polarization: 6.37 SS G_CDS: -5.89 Total: 0.48 kcal Atomic # 6 Polarization: 8.45 SS G_CDS: -2.40 Total: 6.05 kcal Atomic # 7 Polarization: -55.47 SS G_CDS: -0.66 Total: -56.12 kcal Atomic # 8 Polarization: -15.21 SS G_CDS: -0.60 Total: -15.81 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.81 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.03 -9.00 -43.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041711420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.684 kcal (2) G-P(sol) polarization free energy of solvation -34.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds