Wall clock time and date at job start Tue Mar 31 2020 16:06:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38363 * 119.40412 * 2 1 4 4 C 1.38333 * 119.45530 * 179.97438 * 3 2 1 5 5 C 1.39990 * 118.35141 * 359.97438 * 4 3 2 6 6 C 1.47521 * 120.59684 * 179.97438 * 5 4 3 7 7 O 1.21592 * 119.99914 * 141.83978 * 6 5 4 8 8 N 1.34778 * 120.00365 * 321.84321 * 6 5 4 9 9 C 1.47565 * 125.67187 * 354.60493 * 8 6 5 10 10 C 1.55181 * 105.00538 * 203.85989 * 9 8 6 11 11 C 1.53722 * 101.43893 * 324.52446 * 10 9 8 12 12 C 1.53665 * 111.40335 * 272.72625 * 11 10 9 13 13 C 1.55184 * 101.41430 * 272.69481 * 12 11 10 14 14 N 1.47556 * 105.00918 * 324.50842 * 13 12 11 15 15 C 1.36933 * 125.67371 * 203.86209 * 14 13 12 16 16 H 1.08006 * 120.00346 * 169.19326 * 15 14 13 17 17 C 1.38818 * 120.00199 * 349.19532 * 15 14 13 18 18 N 1.31621 * 119.99512 * 350.26740 * 17 15 14 19 19 Si 1.86798 * 120.00126 * 170.27296 * 17 15 14 20 20 H 1.48500 * 109.47242 * 94.96711 * 19 17 15 21 21 H 1.48503 * 109.46906 * 214.96660 * 19 17 15 22 22 H 1.48499 * 109.47123 * 334.96469 * 19 17 15 23 23 C 1.47406 * 108.65255 * 23.85654 * 14 13 12 24 24 C 1.47407 * 125.67590 * 174.60450 * 8 6 5 25 25 C 1.40283 * 118.80549 * 0.27499 * 5 4 3 26 26 O 1.35421 * 119.79774 * 179.70211 * 25 5 4 27 27 N 1.31873 * 119.40825 * 180.02562 * 2 1 3 28 28 H 1.09003 * 109.46736 * 90.00372 * 1 2 3 29 29 H 1.08993 * 109.46793 * 210.00096 * 1 2 3 30 30 H 1.09001 * 109.47153 * 330.00436 * 1 2 3 31 31 H 1.07996 * 120.27204 * 0.02562 * 3 2 1 32 32 H 1.07997 * 120.82315 * 179.97438 * 4 3 2 33 33 H 1.09002 * 110.33372 * 322.74417 * 9 8 6 34 34 H 1.09003 * 110.33438 * 84.87337 * 9 8 6 35 35 H 1.08999 * 111.03389 * 82.53703 * 10 9 8 36 36 H 1.09000 * 111.03249 * 206.42907 * 10 9 8 37 37 H 1.08999 * 111.03144 * 30.73088 * 12 11 10 38 38 H 1.08996 * 111.03079 * 154.66431 * 12 11 10 39 39 H 1.08995 * 110.33545 * 205.62282 * 13 12 11 40 40 H 1.09001 * 110.41902 * 83.43150 * 13 12 11 41 41 H 0.96997 * 119.99465 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.98818 * 238.54828 * 23 14 13 43 43 H 1.08999 * 109.98719 * 117.24308 * 23 14 13 44 44 H 1.08997 * 109.98658 * 297.24337 * 24 8 6 45 45 H 1.08995 * 109.98278 * 58.50942 * 24 8 6 46 46 H 0.96698 * 113.99776 * 90.00208 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1864 1.2054 0.0000 4 6 3.5697 1.2066 0.0005 5 6 4.2356 -0.0248 0.0016 6 6 5.7097 -0.0813 0.0017 7 8 6.2855 -0.9313 0.6530 8 7 6.4183 0.8094 -0.7202 9 6 5.8533 1.8166 -1.6388 10 6 6.9976 2.1370 -2.6369 11 6 8.2324 2.0393 -1.7265 12 6 8.5240 3.3784 -1.0315 13 6 9.4151 4.0848 -2.0875 14 7 10.2188 3.0055 -2.6929 15 6 11.4288 3.1633 -3.3141 16 1 12.0211 2.2974 -3.5709 17 6 11.8944 4.4363 -3.6139 18 7 11.0992 5.4764 -3.4793 19 14 13.6493 4.6729 -4.2086 20 1 13.6695 4.7003 -5.6932 21 1 14.1814 5.9557 -3.6826 22 1 14.4921 3.5510 -3.7227 23 6 9.5024 1.7292 -2.5176 24 6 7.8866 0.9395 -0.7235 25 6 3.4759 -1.2040 -0.0038 26 8 4.0993 -2.4062 -0.0090 27 7 2.1546 -1.1488 -0.0005 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3632 -0.8899 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6411 2.1376 0.0004 32 1 4.1223 2.1345 0.0001 33 1 4.9930 1.4064 -2.1678 34 1 5.5666 2.7127 -1.0885 35 1 7.0404 1.3951 -3.4343 36 1 6.8903 3.1417 -3.0456 37 1 7.6046 3.9376 -0.8582 38 1 9.0684 3.2251 -0.0997 39 1 10.0644 4.8165 -1.6068 40 1 8.7973 4.5674 -2.8448 41 1 11.4246 6.3659 -3.6884 42 1 10.1241 1.0261 -1.9634 43 1 9.2427 1.3111 -3.4901 44 1 8.2382 1.2174 0.2701 45 1 8.3433 -0.0014 -1.0302 46 1 4.2801 -2.7592 0.8729 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001041711420.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:06:42 Heat of formation + Delta-G solvation = -29.148774 kcal Electronic energy + Delta-G solvation = -28539.806124 eV Core-core repulsion = 24622.544456 eV Total energy + Delta-G solvation = -3917.261668 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.11099 -41.11453 -39.56504 -38.30998 -37.18435 -34.77113 -33.96439 -32.62041 -32.00708 -30.55899 -30.29180 -28.98545 -27.29533 -25.48814 -24.52710 -24.16352 -23.40175 -22.14915 -21.02925 -20.27565 -19.63705 -18.85138 -18.32179 -17.82951 -17.34805 -16.88774 -16.75656 -16.46770 -15.99150 -15.67653 -15.47067 -14.97134 -14.92445 -14.58383 -14.36921 -14.25328 -14.04921 -13.86614 -13.65049 -13.51124 -13.18111 -13.07970 -13.01188 -12.87941 -12.68745 -12.67542 -12.62368 -12.45550 -11.98105 -11.84793 -11.62054 -11.43829 -11.35280 -11.29683 -10.96131 -10.66732 -10.51446 -9.92340 -9.70962 -8.83395 -7.88363 -5.21549 -0.44267 0.07092 1.46208 1.47057 1.55660 1.56802 1.81222 2.40746 2.49635 2.67262 3.18965 3.31616 3.50080 3.52606 3.61683 3.67024 3.69890 3.85032 3.95759 4.18525 4.21652 4.27231 4.32825 4.42829 4.55769 4.65898 4.69908 4.71322 4.74402 4.82623 4.84776 4.87785 4.93269 5.01578 5.02958 5.04935 5.16044 5.20840 5.26822 5.32411 5.47186 5.51865 5.63743 5.78094 6.21468 6.35909 6.46081 6.80909 6.94675 7.10168 7.76781 8.43469 9.23587 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.029328 B = 0.002462 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.505435 B =11368.866076 C =11944.116951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.163 3.837 3 C -0.174 4.174 4 C -0.022 4.022 5 C -0.219 4.219 6 C 0.581 3.419 7 O -0.572 6.572 8 N -0.608 5.608 9 C 0.103 3.897 10 C -0.111 4.111 11 C -0.068 4.068 12 C -0.113 4.113 13 C 0.181 3.819 14 N -0.624 5.624 15 C -0.244 4.244 16 H 0.073 0.927 17 C -0.060 4.060 18 N -0.944 5.944 19 Si 0.973 3.027 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.273 1.273 23 C 0.146 3.854 24 C 0.133 3.867 25 C 0.349 3.651 26 O -0.490 6.490 27 N -0.533 5.533 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.188 0.812 32 H 0.170 0.830 33 H 0.091 0.909 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.008 0.992 41 H 0.249 0.751 42 H 0.024 0.976 43 H 0.023 0.977 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.107 -5.638 8.522 26.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.025 3.975 3 C -0.193 4.193 4 C -0.047 4.047 5 C -0.225 4.225 6 C 0.370 3.630 7 O -0.452 6.452 8 N -0.340 5.340 9 C -0.018 4.018 10 C -0.149 4.149 11 C -0.070 4.070 12 C -0.152 4.152 13 C 0.057 3.943 14 N -0.350 5.350 15 C -0.374 4.374 16 H 0.091 0.909 17 C -0.254 4.254 18 N -0.592 5.592 19 Si 0.802 3.198 20 H -0.213 1.213 21 H -0.218 1.218 22 H -0.198 1.198 23 C 0.021 3.979 24 C 0.011 3.989 25 C 0.170 3.830 26 O -0.301 6.301 27 N -0.253 5.253 28 H 0.113 0.887 29 H 0.093 0.907 30 H 0.129 0.871 31 H 0.205 0.795 32 H 0.187 0.813 33 H 0.110 0.890 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.112 0.888 37 H 0.115 0.885 38 H 0.082 0.918 39 H 0.046 0.954 40 H 0.026 0.974 41 H 0.058 0.942 42 H 0.042 0.958 43 H 0.041 0.959 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.280 0.720 Dipole moment (debyes) X Y Z Total from point charges -24.142 -6.758 8.247 26.392 hybrid contribution 2.187 0.549 -0.123 2.258 sum -21.955 -6.210 8.124 24.220 Atomic orbital electron populations 1.20964 0.85646 1.05137 1.04655 1.22004 0.98744 0.86999 0.89713 1.22358 0.93788 1.00715 1.02444 1.22174 0.95354 0.96731 0.90487 1.20864 0.93043 0.95803 1.12837 1.17835 0.86690 0.79731 0.78699 1.90745 1.72328 1.37067 1.45084 1.48536 1.07338 1.34586 1.43551 1.22766 0.96777 0.91735 0.90551 1.22632 0.92123 1.03453 0.96703 1.21338 0.95180 0.95144 0.95292 1.22757 1.00211 0.94704 0.97489 1.21250 0.91286 0.89869 0.91930 1.44861 1.20329 1.03506 1.66324 1.19344 0.93976 0.92724 1.31318 0.90876 1.25583 1.02147 0.95639 1.02001 1.70124 1.35496 0.98294 1.55299 0.85149 0.79987 0.77040 0.77656 1.21333 1.21779 1.19770 1.21197 0.91458 0.88754 0.96489 1.21652 0.79941 0.98065 0.99273 1.19220 0.86721 0.84874 0.92205 1.84597 1.76862 1.32938 1.35660 1.67163 1.08779 1.32320 1.17068 0.88656 0.90731 0.87136 0.79488 0.81280 0.89050 0.87952 0.90937 0.88823 0.88495 0.91816 0.95361 0.97410 0.94214 0.95828 0.95878 0.90999 0.92318 0.71999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.73 10.16 71.24 0.72 -0.01 16 2 C 0.16 2.33 6.78 42.58 0.29 2.62 16 3 C -0.17 -1.77 9.71 22.32 0.22 -1.55 16 4 C -0.02 -0.31 8.35 22.72 0.19 -0.12 16 5 C -0.22 -4.93 5.38 -19.91 -0.11 -5.04 16 6 C 0.58 16.40 7.33 86.69 0.64 17.03 16 7 O -0.57 -20.13 16.44 11.53 0.19 -19.94 16 8 N -0.61 -15.45 3.34 -816.61 -2.73 -18.18 16 9 C 0.10 1.95 5.16 86.92 0.45 2.40 16 10 C -0.11 -2.80 5.89 31.59 0.19 -2.62 16 11 C -0.07 -2.12 0.62 -51.84 -0.03 -2.15 16 12 C -0.11 -3.71 5.89 31.57 0.19 -3.53 16 13 C 0.18 8.37 5.30 86.93 0.46 8.83 16 14 N -0.62 -31.45 3.41 -693.07 -2.36 -33.82 16 15 C -0.24 -13.71 10.24 84.04 0.86 -12.85 16 16 H 0.07 4.01 7.85 -2.91 -0.02 3.98 16 17 C -0.06 -3.38 5.40 84.86 0.46 -2.92 16 18 N -0.94 -55.45 10.72 21.65 0.23 -55.22 16 19 Si 0.97 45.54 29.56 68.60 2.03 47.57 16 20 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 21 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 22 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 23 C 0.15 5.94 6.42 86.14 0.55 6.49 16 24 C 0.13 3.89 6.05 86.14 0.52 4.41 16 25 C 0.35 8.61 7.74 85.13 0.66 9.27 16 26 O -0.49 -12.86 12.31 -71.62 -0.88 -13.74 16 27 N -0.53 -11.69 10.28 -296.05 -3.04 -14.73 16 28 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.11 0.12 8.07 -2.39 -0.02 0.10 16 31 H 0.19 0.34 8.06 -2.91 -0.02 0.32 16 32 H 0.17 1.61 6.02 -2.91 -0.02 1.59 16 33 H 0.09 1.48 7.36 -2.39 -0.02 1.46 16 34 H 0.10 1.37 6.92 -2.39 -0.02 1.35 16 35 H 0.07 1.90 7.80 -2.39 -0.02 1.88 16 36 H 0.09 2.38 7.89 -2.39 -0.02 2.36 16 37 H 0.10 2.51 7.88 -2.39 -0.02 2.49 16 38 H 0.06 2.10 7.79 -2.39 -0.02 2.08 16 39 H 0.03 1.49 7.01 -2.39 -0.02 1.48 16 40 H 0.01 0.39 8.00 -2.39 -0.02 0.37 16 41 H 0.25 14.17 8.31 -92.71 -0.77 13.40 16 42 H 0.02 0.97 7.78 -2.39 -0.02 0.95 16 43 H 0.02 0.96 7.61 -2.39 -0.02 0.94 16 44 H 0.07 2.11 7.61 -2.39 -0.02 2.09 16 45 H 0.06 1.87 7.78 -2.39 -0.02 1.85 16 46 H 0.42 8.05 9.06 -74.06 -0.67 7.38 16 Total: -1.00 -77.59 368.88 0.02 -77.57 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.34 Total: 10.24 kcal Atomic # 6 Polarization: 14.02 SS G_CDS: 6.25 Total: 20.26 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -7.90 Total: -121.95 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.69 Total: -33.69 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -77.59 0.02 -77.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001041711420.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.420 kcal (2) G-P(sol) polarization free energy of solvation -77.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds