Wall clock time and date at job start Tue Mar 31 2020 17:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.37997 * 120.81992 * 2 1 4 4 C 1.39131 * 119.26757 * 179.97438 * 3 2 1 5 5 O 1.35493 * 119.52716 * 179.97438 * 4 3 2 6 6 N 1.32435 * 120.94548 * 0.02562 * 4 3 2 7 7 C 1.31645 * 121.80175 * 359.70058 * 6 4 3 8 8 C 1.39559 * 120.62086 * 0.58627 * 7 6 4 9 9 C 1.47617 * 120.49544 * 179.70280 * 8 7 6 10 10 O 1.21581 * 120.00060 * 234.09965 * 9 8 7 11 11 N 1.34777 * 120.00122 * 54.10289 * 9 8 7 12 12 C 1.45225 * 119.33737 * 355.96655 * 11 9 8 13 13 C 1.50611 * 112.83820 * 136.00172 * 12 11 9 14 14 C 1.48860 * 117.90247 * 27.68204 * 13 12 11 15 15 H 1.09006 * 106.75995 * 217.69497 * 14 13 12 16 16 C 1.55061 * 111.54660 * 101.51715 * 14 13 12 17 17 C 1.55055 * 101.27365 * 194.53040 * 16 14 13 18 18 N 1.47558 * 104.85129 * 35.97170 * 17 16 14 19 19 C 1.36943 * 125.85720 * 156.09317 * 18 17 16 20 20 H 1.07999 * 119.99313 * 180.02562 * 19 18 17 21 21 C 1.38811 * 119.99952 * 0.02562 * 19 18 17 22 22 N 1.31615 * 120.00364 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99589 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47468 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47010 * 120.00331 * 23 21 19 26 26 H 1.48504 * 109.47208 * 240.00135 * 23 21 19 27 27 C 1.47624 * 108.28378 * 336.10920 * 18 17 16 28 28 H 1.08994 * 108.10513 * 244.72816 * 27 18 17 29 29 C 1.44678 * 119.91649 * 176.36229 * 11 9 8 30 30 H 1.09008 * 109.46984 * 274.43266 * 1 2 3 31 31 H 1.08994 * 109.47814 * 34.43272 * 1 2 3 32 32 H 1.08999 * 109.47446 * 154.43714 * 1 2 3 33 33 H 1.08000 * 120.37019 * 0.02562 * 3 2 1 34 34 H 0.96696 * 114.00266 * 89.99862 * 5 4 3 35 35 H 1.07996 * 119.68799 * 180.29346 * 7 6 4 36 36 H 1.08999 * 108.81340 * 15.13657 * 12 11 9 37 37 H 1.09002 * 108.81289 * 256.86410 * 12 11 9 38 38 H 1.09002 * 107.75100 * 265.55096 * 13 12 11 39 39 H 1.08998 * 107.76140 * 149.81761 * 13 12 11 40 40 H 1.08997 * 111.06988 * 76.52214 * 16 14 13 41 41 H 1.08997 * 111.06576 * 312.54696 * 16 14 13 42 42 H 1.09008 * 110.36315 * 154.81188 * 17 16 14 43 43 H 1.08996 * 110.36895 * 277.01415 * 17 16 14 44 44 H 0.96999 * 120.00545 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.26912 * 107.99898 * 29 11 9 46 46 H 1.09004 * 108.17559 * 349.65910 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2139 1.1851 0.0000 4 6 3.6047 1.1474 0.0005 5 8 4.3042 2.3078 0.0000 6 7 4.2547 -0.0065 0.0005 7 6 3.6204 -1.1600 0.0059 8 6 2.2255 -1.2043 -0.0005 9 6 1.5172 -2.4994 -0.0011 10 8 0.6877 -2.7382 -0.8573 11 7 1.7898 -3.4171 0.9476 12 6 2.8445 -3.1533 1.9105 13 6 2.4525 -3.5119 3.3198 14 6 1.4428 -4.5891 3.5093 15 1 0.8158 -4.2882 4.3487 16 6 2.1095 -5.9304 3.9103 17 6 0.9480 -6.9295 3.6716 18 7 0.2424 -6.4123 2.4834 19 6 -0.5323 -7.1483 1.6270 20 1 -1.0069 -6.6707 0.7825 21 6 -0.7076 -8.5080 1.8442 22 7 -0.1296 -9.0899 2.8736 23 14 -1.7638 -9.5120 0.6755 24 1 -2.2960 -8.6290 -0.3933 25 1 -0.9414 -10.5872 0.0648 26 1 -2.8931 -10.1181 1.4256 27 6 0.5151 -4.9655 2.3761 28 1 -0.4256 -4.4324 2.5134 29 6 1.0393 -4.6532 0.9927 30 1 -0.3633 0.0794 1.0247 31 1 -0.3634 0.8475 -0.5810 32 1 -0.3634 -0.9270 -0.4434 33 1 1.6935 2.1314 0.0004 34 1 4.5069 2.6453 0.8832 35 1 4.1848 -2.0807 0.0105 36 1 3.0962 -2.0934 1.8746 37 1 3.7261 -3.7313 1.6332 38 1 2.0702 -2.6100 3.7980 39 1 3.3570 -3.8068 3.8517 40 1 2.4092 -5.9212 4.9582 41 1 2.9583 -6.1545 3.2643 42 1 1.3404 -7.9274 3.4752 43 1 0.2805 -6.9481 4.5331 44 1 -0.2518 -10.0402 3.0252 45 1 1.6769 -5.4732 0.6625 46 1 0.1967 -4.5645 0.3069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042230661.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:16 Heat of formation + Delta-G solvation = -23.671228 kcal Electronic energy + Delta-G solvation = -29248.983119 eV Core-core repulsion = 25331.958975 eV Total energy + Delta-G solvation = -3917.024144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.28777 -41.05241 -39.72657 -38.03806 -37.05899 -35.01605 -34.80884 -33.34919 -32.18290 -30.59922 -30.14880 -29.00270 -26.79202 -26.22906 -24.73684 -23.96509 -23.30920 -22.19642 -21.46897 -19.46795 -19.25233 -18.95216 -18.65245 -17.94213 -17.33350 -16.97498 -16.79155 -16.55989 -16.13606 -15.75963 -15.54070 -15.46287 -14.96116 -14.72918 -14.32613 -14.22172 -14.14548 -13.81531 -13.60387 -13.53610 -13.46560 -13.34548 -13.14812 -12.94637 -12.73087 -12.69709 -12.67157 -12.23780 -11.98282 -11.70243 -11.46304 -11.35483 -11.26863 -11.00242 -10.76088 -10.65741 -10.49795 -9.99897 -9.68378 -8.92090 -7.79658 -5.23542 -0.42158 0.04361 1.42295 1.44836 1.45002 1.55218 1.86814 2.42855 2.47100 2.61547 3.28969 3.30521 3.49962 3.54979 3.57233 3.69151 3.81691 3.93394 3.97599 4.17197 4.23830 4.29788 4.30083 4.38098 4.42024 4.58942 4.63090 4.64418 4.67947 4.75432 4.90201 4.91320 4.95306 5.01190 5.08892 5.16080 5.22717 5.34211 5.37981 5.43993 5.52592 5.56692 5.69060 5.82652 6.29642 6.30187 6.55178 6.78692 6.98305 7.09755 7.75267 8.38690 9.22041 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.020234 B = 0.003175 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.508607 B = 8817.088399 C = 9627.919339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.018 3.982 3 C -0.181 4.181 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.524 5.524 7 C 0.166 3.834 8 C -0.203 4.203 9 C 0.562 3.438 10 O -0.573 6.573 11 N -0.583 5.583 12 C 0.100 3.900 13 C -0.110 4.110 14 C -0.079 4.079 15 H 0.063 0.937 16 C -0.123 4.123 17 C 0.149 3.851 18 N -0.614 5.614 19 C -0.232 4.232 20 H 0.072 0.928 21 C -0.061 4.061 22 N -0.944 5.944 23 Si 0.972 3.028 24 H -0.273 1.273 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.164 3.836 28 H 0.007 0.993 29 C 0.124 3.876 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.180 0.820 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.104 0.896 40 H 0.089 0.911 41 H 0.066 0.934 42 H 0.071 0.929 43 H -0.013 1.013 44 H 0.247 0.753 45 H 0.051 0.949 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.938 23.167 1.522 25.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.010 3.990 3 C -0.202 4.202 4 C 0.153 3.847 5 O -0.298 6.298 6 N -0.244 5.244 7 C 0.008 3.992 8 C -0.208 4.208 9 C 0.351 3.649 10 O -0.453 6.453 11 N -0.313 5.313 12 C -0.022 4.022 13 C -0.148 4.148 14 C -0.099 4.099 15 H 0.081 0.919 16 C -0.162 4.162 17 C 0.024 3.976 18 N -0.339 5.339 19 C -0.361 4.361 20 H 0.090 0.910 21 C -0.254 4.254 22 N -0.594 5.594 23 Si 0.801 3.199 24 H -0.198 1.198 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.056 3.944 28 H 0.025 0.975 29 C -0.001 4.001 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.081 0.919 33 H 0.193 0.807 34 H 0.289 0.711 35 H 0.197 0.803 36 H 0.121 0.879 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.123 0.877 40 H 0.108 0.892 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.005 0.995 44 H 0.057 0.943 45 H 0.070 0.930 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.294 22.863 0.505 25.079 hybrid contribution -1.848 -1.239 -0.125 2.228 sum 8.446 21.625 0.380 23.219 Atomic orbital electron populations 1.21092 0.88947 1.04720 1.04315 1.20385 0.97665 0.90779 0.90144 1.22116 0.93386 0.99825 1.04874 1.19521 0.87565 0.85375 0.92237 1.84683 1.75682 1.33158 1.36250 1.67258 1.42189 0.98620 1.16313 1.22884 0.89373 0.95939 0.91000 1.20677 0.95964 0.93288 1.10893 1.18471 0.81703 0.83751 0.81019 1.90763 1.36325 1.79595 1.38594 1.47065 1.36279 1.17609 1.30325 1.21324 0.89353 1.03071 0.88438 1.20402 1.00042 0.98048 0.96315 1.20421 0.96763 0.95996 0.96678 0.91867 1.23073 0.97421 0.94235 1.01453 1.21783 0.91004 0.98133 0.86635 1.45023 1.56637 1.03323 1.28866 1.19328 1.21534 0.90645 1.04614 0.90963 1.25506 1.02306 0.97642 0.99900 1.70048 1.48600 1.10038 1.30684 0.85101 0.77956 0.78604 0.78257 1.19763 1.21584 1.21766 1.20094 0.95697 0.85335 0.93248 0.97499 1.20915 0.95633 0.84686 0.98861 0.88752 0.88097 0.91941 0.80654 0.71078 0.80296 0.87887 0.90047 0.90412 0.87728 0.89220 0.91543 0.91115 0.99518 0.94292 0.93043 0.92649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.54 9.75 71.23 0.69 -1.85 16 2 C 0.02 0.36 5.94 -19.44 -0.12 0.25 16 3 C -0.18 -2.70 9.74 22.43 0.22 -2.49 16 4 C 0.33 5.58 7.74 84.82 0.66 6.24 16 5 O -0.49 -6.18 13.55 -87.94 -1.19 -7.37 16 6 N -0.52 -10.60 10.37 -307.81 -3.19 -13.79 16 7 C 0.17 3.33 8.70 85.04 0.74 4.07 16 8 C -0.20 -4.73 4.73 -20.00 -0.09 -4.82 16 9 C 0.56 17.32 6.58 86.72 0.57 17.89 16 10 O -0.57 -22.52 14.50 -3.97 -0.06 -22.58 16 11 N -0.58 -17.32 3.03 -841.23 -2.55 -19.87 16 12 C 0.10 2.06 5.20 85.84 0.45 2.51 16 13 C -0.11 -2.25 5.55 28.51 0.16 -2.09 16 14 C -0.08 -2.44 2.63 -11.99 -0.03 -2.47 16 15 H 0.06 1.93 8.10 -2.38 -0.02 1.91 16 16 C -0.12 -4.14 6.24 32.00 0.20 -3.94 16 17 C 0.15 7.15 5.91 86.88 0.51 7.66 16 18 N -0.61 -31.21 3.16 -675.17 -2.13 -33.34 16 19 C -0.23 -13.13 9.77 84.03 0.82 -12.31 16 20 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 21 C -0.06 -3.46 5.49 84.86 0.47 -3.00 16 22 N -0.94 -55.97 10.12 21.65 0.22 -55.75 16 23 Si 0.97 46.66 29.55 68.60 2.03 48.69 16 24 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 26 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 27 C 0.16 6.66 3.29 43.60 0.14 6.80 16 28 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 29 C 0.12 4.85 5.46 86.13 0.47 5.32 16 30 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 31 H 0.10 1.39 8.13 -2.39 -0.02 1.37 16 32 H 0.06 1.66 5.73 -2.39 -0.01 1.65 16 33 H 0.18 1.53 8.06 -2.91 -0.02 1.51 16 34 H 0.43 0.76 9.06 -74.06 -0.67 0.09 16 35 H 0.18 2.99 7.33 -2.91 -0.02 2.96 16 36 H 0.10 1.68 4.93 -2.39 -0.01 1.67 16 37 H 0.08 1.46 8.13 -2.39 -0.02 1.44 16 38 H 0.08 1.33 8.13 -2.39 -0.02 1.31 16 39 H 0.10 1.64 7.65 -2.39 -0.02 1.62 16 40 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.07 3.89 5.92 -2.38 -0.01 3.87 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 45 H 0.05 2.20 8.07 -2.39 -0.02 2.18 16 46 H 0.05 2.48 6.85 -2.38 -0.02 2.46 16 Total: -1.00 -76.51 361.22 -0.68 -77.18 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: 0.34 Total: 9.08 kcal Atomic # 6 Polarization: 11.91 SS G_CDS: 5.85 Total: 17.76 kcal Atomic # 7 Polarization: -115.10 SS G_CDS: -7.65 Total: -122.76 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.25 Total: -29.96 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -76.51 -0.68 -77.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230661.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.510 kcal (2) G-P(sol) polarization free energy of solvation -76.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds