Wall clock time and date at job start Tue Mar 31 2020 17:44:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37993 * 120.82351 * 2 1 4 4 C 1.39129 * 119.26434 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52250 * 179.97438 * 4 3 2 6 6 N 1.32424 * 120.95024 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79985 * 0.02562 * 6 4 3 8 8 C 1.39561 * 120.62998 * 359.97438 * 7 6 4 9 9 C 1.47608 * 120.50235 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00014 * 126.68883 * 9 8 7 11 11 N 1.34782 * 119.99893 * 306.69174 * 9 8 7 12 12 C 1.46591 * 119.75536 * 3.74156 * 11 9 8 13 13 C 1.53501 * 110.93480 * 227.68486 * 12 11 9 14 14 C 1.51982 * 107.36899 * 308.44666 * 13 12 11 15 15 H 1.09002 * 111.56672 * 302.99752 * 14 13 12 16 16 C 1.53696 * 114.99509 * 175.29096 * 14 13 12 17 17 C 1.55303 * 101.81264 * 206.55116 * 16 14 13 18 18 N 1.48154 * 107.04220 * 22.44143 * 17 16 14 19 19 C 1.36942 * 126.39340 * 184.98538 * 18 17 16 20 20 H 1.08003 * 119.99592 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00537 * 0.02562 * 19 18 17 22 22 N 1.31631 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47567 * 90.00135 * 23 21 19 25 25 H 1.48502 * 109.47239 * 210.00220 * 23 21 19 26 26 H 1.48502 * 109.46936 * 329.99920 * 23 21 19 27 27 C 1.45498 * 107.20517 * 5.00111 * 18 17 16 28 28 H 1.09004 * 109.56091 * 85.84600 * 27 18 17 29 29 C 1.47804 * 119.75357 * 184.02090 * 11 9 8 30 30 H 1.08997 * 109.46992 * 264.63079 * 1 2 3 31 31 H 1.09002 * 109.46863 * 24.63431 * 1 2 3 32 32 H 1.08993 * 109.47196 * 144.62872 * 1 2 3 33 33 H 1.07998 * 120.36467 * 0.04471 * 3 2 1 34 34 H 0.96704 * 113.99882 * 89.99522 * 5 4 3 35 35 H 1.08005 * 119.68679 * 180.27252 * 7 6 4 36 36 H 1.09000 * 109.23251 * 348.08756 * 12 11 9 37 37 H 1.08996 * 109.22467 * 107.44766 * 12 11 9 38 38 H 1.08998 * 109.96760 * 188.90966 * 13 12 11 39 39 H 1.08995 * 109.80052 * 67.88487 * 13 12 11 40 40 H 1.08990 * 110.96355 * 88.41892 * 16 14 13 41 41 H 1.09000 * 110.96096 * 324.67670 * 16 14 13 42 42 H 1.09003 * 109.91859 * 263.09356 * 17 16 14 43 43 H 1.09002 * 109.91606 * 141.79049 * 17 16 14 44 44 H 0.96992 * 119.99890 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.06034 * 247.93570 * 29 11 9 46 46 H 1.09002 * 110.06412 * 9.38990 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1472 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0066 -0.0005 7 6 3.6204 -1.1601 -0.0005 8 6 2.2255 -1.2045 0.0000 9 6 1.5171 -2.4994 0.0006 10 8 0.6737 -2.7306 0.8453 11 7 1.8052 -3.4256 -0.9353 12 6 2.8796 -3.1748 -1.9005 13 6 2.4173 -3.4897 -3.3300 14 6 1.8270 -4.8901 -3.3178 15 1 2.5444 -5.6241 -2.9507 16 6 1.2023 -5.3432 -4.6469 17 6 0.1488 -6.3783 -4.1666 18 7 -0.1566 -6.0624 -2.7517 19 6 -0.9634 -6.7850 -1.9137 20 1 -1.1152 -6.4581 -0.8956 21 6 -1.5862 -7.9374 -2.3728 22 7 -1.4008 -8.3361 -3.6135 23 14 -2.6873 -8.9226 -1.2299 24 1 -4.0823 -8.4249 -1.3357 25 1 -2.6429 -10.3564 -1.6140 26 1 -2.2120 -8.7700 0.1687 27 6 0.5605 -4.8409 -2.4190 28 1 -0.0397 -3.9764 -2.7029 29 6 1.0313 -4.6839 -0.9847 30 1 -0.3633 -0.0962 1.0231 31 1 -0.3633 0.9342 -0.4284 32 1 -0.3633 -0.8379 -0.5948 33 1 1.6936 2.1313 0.0007 34 1 4.5078 2.6447 0.8822 35 1 4.1848 -2.0810 0.0039 36 1 3.1770 -2.1277 -1.8427 37 1 3.7354 -3.8042 -1.6565 38 1 3.2660 -3.4509 -4.0127 39 1 1.6591 -2.7704 -3.6397 40 1 1.9476 -5.8141 -5.2876 41 1 0.7233 -4.5077 -5.1575 42 1 0.5570 -7.3861 -4.2424 43 1 -0.7556 -6.2947 -4.7694 44 1 -1.8363 -9.1411 -3.9344 45 1 1.6664 -5.5246 -0.7053 46 1 0.1752 -4.6230 -0.3128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001042230662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:21 Heat of formation + Delta-G solvation = -1.869857 kcal Electronic energy + Delta-G solvation = -29208.765530 eV Core-core repulsion = 25292.686764 eV Total energy + Delta-G solvation = -3916.078766 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.25177 -39.88140 -38.36727 -37.25595 -35.52585 -34.14116 -32.94846 -31.53818 -31.02239 -29.24273 -28.53219 -28.06537 -25.13682 -24.53678 -23.42535 -22.63320 -22.17170 -20.29373 -19.95871 -19.26557 -18.71353 -17.72993 -17.16654 -16.56216 -16.15924 -15.95691 -15.16054 -14.82050 -14.67886 -14.48953 -14.34245 -13.86073 -13.83531 -13.41008 -13.23308 -13.12581 -13.00011 -12.88430 -12.60328 -12.33919 -12.24081 -12.02287 -11.91190 -11.55774 -11.33642 -10.96293 -10.83533 -10.77067 -10.23159 -10.14141 -10.00547 -9.91925 -9.86289 -9.70103 -9.60896 -9.53427 -9.12213 -8.64675 -8.51652 -6.87989 -5.73685 -3.07784 0.38871 0.82607 2.58441 2.94418 3.10605 3.40662 3.46038 3.46626 3.47889 4.19698 4.28707 4.38021 4.49137 4.68011 4.84110 4.87696 4.96668 5.07526 5.11463 5.30573 5.35941 5.42750 5.45077 5.46882 5.58930 5.64784 5.71861 5.75089 5.85696 5.96079 5.99343 6.04557 6.08250 6.10418 6.14443 6.32649 6.43501 6.53406 6.65494 6.71185 7.01340 7.07396 7.42566 7.49594 7.53264 7.58939 7.79388 8.14820 8.21553 9.17019 9.79999 10.46390 11.38576 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.003182 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.289727 B = 8798.493636 C = 9617.761231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.022 3.978 3 C -0.192 4.192 4 C 0.326 3.674 5 O -0.481 6.481 6 N -0.508 5.508 7 C 0.160 3.840 8 C -0.187 4.187 9 C 0.562 3.438 10 O -0.529 6.529 11 N -0.596 5.596 12 C 0.101 3.899 13 C -0.119 4.119 14 C -0.114 4.114 15 H 0.078 0.922 16 C -0.138 4.138 17 C 0.177 3.823 18 N -0.591 5.591 19 C -0.229 4.229 20 H 0.080 0.920 21 C -0.006 4.006 22 N -0.921 5.921 23 Si 0.910 3.090 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.280 1.280 27 C 0.157 3.843 28 H 0.023 0.977 29 C 0.118 3.882 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.147 0.853 34 H 0.403 0.597 35 H 0.167 0.833 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.067 0.933 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.056 0.944 43 H 0.038 0.962 44 H 0.252 0.748 45 H 0.074 0.926 46 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.935 18.373 4.294 21.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.014 3.986 3 C -0.213 4.213 4 C 0.148 3.852 5 O -0.289 6.289 6 N -0.227 5.227 7 C 0.001 3.999 8 C -0.192 4.192 9 C 0.348 3.652 10 O -0.405 6.405 11 N -0.329 5.329 12 C -0.022 4.022 13 C -0.157 4.157 14 C -0.134 4.134 15 H 0.097 0.903 16 C -0.176 4.176 17 C 0.053 3.947 18 N -0.316 5.316 19 C -0.357 4.357 20 H 0.097 0.903 21 C -0.202 4.202 22 N -0.568 5.568 23 Si 0.740 3.260 24 H -0.216 1.216 25 H -0.217 1.217 26 H -0.206 1.206 27 C 0.047 3.953 28 H 0.040 0.960 29 C -0.004 4.004 30 H 0.108 0.892 31 H 0.093 0.907 32 H 0.097 0.903 33 H 0.164 0.836 34 H 0.261 0.739 35 H 0.184 0.816 36 H 0.097 0.903 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.092 0.908 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 11.204 18.037 4.127 21.631 hybrid contribution -1.276 -0.455 0.899 1.626 sum 9.928 17.583 5.026 20.808 Atomic orbital electron populations 1.20922 0.88955 1.03566 1.04241 1.20257 0.97363 0.90645 0.90296 1.21934 0.93740 0.99415 1.06197 1.19308 0.87069 0.85203 0.93607 1.84721 1.75959 1.34119 1.34097 1.67183 1.41892 0.98180 1.15442 1.22740 0.90042 0.95328 0.91741 1.20953 0.95463 0.94727 1.08073 1.17960 0.82487 0.82947 0.81836 1.90816 1.33384 1.79109 1.37230 1.48247 1.35456 1.18614 1.30547 1.21873 0.89425 1.01367 0.89534 1.21722 1.01160 0.97869 0.94981 1.22290 0.97850 0.95078 0.98143 0.90327 1.22728 0.99222 0.99932 0.95752 1.21550 0.94147 0.95101 0.83878 1.44168 1.53214 1.24983 1.09284 1.19039 1.19916 1.03511 0.93272 0.90252 1.24786 1.00522 0.98310 0.96589 1.69945 1.47005 1.25282 1.14612 0.86143 0.80565 0.79361 0.79883 1.21587 1.21697 1.20552 1.20976 0.91289 0.91282 0.91708 0.95961 1.21788 0.95915 0.83063 0.99658 0.89187 0.90738 0.90251 0.83561 0.73882 0.81567 0.90282 0.91198 0.90688 0.91459 0.92181 0.92585 0.92579 0.94428 0.93735 0.90795 0.88827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.25 9.09 36.01 0.33 -0.92 16 2 C 0.02 0.25 5.94 -103.95 -0.62 -0.37 16 3 C -0.19 -1.78 9.70 -39.34 -0.38 -2.16 16 4 C 0.33 3.31 7.74 -16.97 -0.13 3.18 16 5 O -0.48 -3.97 13.55 -18.20 -0.25 -4.22 16 6 N -0.51 -5.84 10.37 -12.96 -0.13 -5.97 16 7 C 0.16 1.76 8.62 -17.14 -0.15 1.62 16 8 C -0.19 -2.31 4.82 -104.83 -0.51 -2.81 16 9 C 0.56 8.54 6.26 -12.43 -0.08 8.46 16 10 O -0.53 -9.80 15.61 5.29 0.08 -9.72 16 11 N -0.60 -8.84 3.02 -174.18 -0.53 -9.36 16 12 C 0.10 1.19 5.22 -3.73 -0.02 1.17 16 13 C -0.12 -1.50 5.70 -26.99 -0.15 -1.66 16 14 C -0.11 -1.87 2.62 -89.52 -0.23 -2.10 16 15 H 0.08 1.32 8.13 -51.93 -0.42 0.90 16 16 C -0.14 -2.45 6.54 -25.15 -0.16 -2.62 16 17 C 0.18 4.17 5.45 -1.91 -0.01 4.16 16 18 N -0.59 -14.58 3.35 -162.91 -0.55 -15.12 16 19 C -0.23 -6.24 9.88 -15.06 -0.15 -6.39 16 20 H 0.08 2.11 7.41 -52.48 -0.39 1.72 16 21 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 22 N -0.92 -26.68 10.44 55.49 0.58 -26.10 16 23 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C 0.16 3.11 2.77 -67.83 -0.19 2.92 16 28 H 0.02 0.49 7.90 -51.93 -0.41 0.07 16 29 C 0.12 2.14 5.68 -3.95 -0.02 2.12 16 30 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 32 H 0.08 0.99 7.28 -51.93 -0.38 0.61 16 33 H 0.15 0.99 8.06 -52.49 -0.42 0.56 16 34 H 0.40 1.24 9.06 45.56 0.41 1.65 16 35 H 0.17 1.54 7.31 -52.48 -0.38 1.15 16 36 H 0.08 0.83 4.85 -51.93 -0.25 0.58 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.89 7.97 -51.93 -0.41 0.48 16 40 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.06 0.94 8.12 -51.93 -0.42 0.52 16 42 H 0.06 1.46 7.21 -51.93 -0.37 1.09 16 43 H 0.04 0.98 7.78 -51.93 -0.40 0.58 16 44 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.09 1.92 6.78 -51.93 -0.35 1.57 16 LS Contribution 363.67 15.07 5.48 5.48 Total: -1.00 -33.31 363.67 -8.78 -42.10 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -5.88 Total: 1.51 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: -2.57 Total: 4.36 kcal Atomic # 7 Polarization: -55.94 SS G_CDS: -0.63 Total: -56.56 kcal Atomic # 8 Polarization: -13.77 SS G_CDS: -0.16 Total: -13.94 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.31 -8.78 -42.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.225 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds