Wall clock time and date at job start Tue Mar 31 2020 17:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37993 * 120.82351 * 2 1 4 4 C 1.39129 * 119.26434 * 180.02562 * 3 2 1 5 5 O 1.35501 * 119.52250 * 179.97438 * 4 3 2 6 6 N 1.32424 * 120.95024 * 359.97438 * 4 3 2 7 7 C 1.31640 * 121.79985 * 0.02562 * 6 4 3 8 8 C 1.39561 * 120.62998 * 359.97438 * 7 6 4 9 9 C 1.47608 * 120.50235 * 180.02562 * 8 7 6 10 10 O 1.21586 * 120.00014 * 126.68883 * 9 8 7 11 11 N 1.34782 * 119.99893 * 306.69174 * 9 8 7 12 12 C 1.46591 * 119.75536 * 3.74156 * 11 9 8 13 13 C 1.53501 * 110.93480 * 227.68486 * 12 11 9 14 14 C 1.51982 * 107.36899 * 308.44666 * 13 12 11 15 15 H 1.09002 * 111.56672 * 302.99752 * 14 13 12 16 16 C 1.53696 * 114.99509 * 175.29096 * 14 13 12 17 17 C 1.55303 * 101.81264 * 206.55116 * 16 14 13 18 18 N 1.48154 * 107.04220 * 22.44143 * 17 16 14 19 19 C 1.36942 * 126.39340 * 184.98538 * 18 17 16 20 20 H 1.08003 * 119.99592 * 180.02562 * 19 18 17 21 21 C 1.38807 * 120.00537 * 0.02562 * 19 18 17 22 22 N 1.31631 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00408 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47567 * 90.00135 * 23 21 19 25 25 H 1.48502 * 109.47239 * 210.00220 * 23 21 19 26 26 H 1.48502 * 109.46936 * 329.99920 * 23 21 19 27 27 C 1.45498 * 107.20517 * 5.00111 * 18 17 16 28 28 H 1.09004 * 109.56091 * 85.84600 * 27 18 17 29 29 C 1.47804 * 119.75357 * 184.02090 * 11 9 8 30 30 H 1.08997 * 109.46992 * 264.63079 * 1 2 3 31 31 H 1.09002 * 109.46863 * 24.63431 * 1 2 3 32 32 H 1.08993 * 109.47196 * 144.62872 * 1 2 3 33 33 H 1.07998 * 120.36467 * 0.04471 * 3 2 1 34 34 H 0.96704 * 113.99882 * 89.99522 * 5 4 3 35 35 H 1.08005 * 119.68679 * 180.27252 * 7 6 4 36 36 H 1.09000 * 109.23251 * 348.08756 * 12 11 9 37 37 H 1.08996 * 109.22467 * 107.44766 * 12 11 9 38 38 H 1.08998 * 109.96760 * 188.90966 * 13 12 11 39 39 H 1.08995 * 109.80052 * 67.88487 * 13 12 11 40 40 H 1.08990 * 110.96355 * 88.41892 * 16 14 13 41 41 H 1.09000 * 110.96096 * 324.67670 * 16 14 13 42 42 H 1.09003 * 109.91859 * 263.09356 * 17 16 14 43 43 H 1.09002 * 109.91606 * 141.79049 * 17 16 14 44 44 H 0.96992 * 119.99890 * 180.02562 * 22 21 19 45 45 H 1.08999 * 110.06034 * 247.93570 * 29 11 9 46 46 H 1.09002 * 110.06412 * 9.38990 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2141 1.1850 0.0000 4 6 3.6049 1.1472 -0.0005 5 8 4.3044 2.3076 -0.0011 6 7 4.2548 -0.0066 -0.0005 7 6 3.6204 -1.1601 -0.0005 8 6 2.2255 -1.2045 0.0000 9 6 1.5171 -2.4994 0.0006 10 8 0.6737 -2.7306 0.8453 11 7 1.8052 -3.4256 -0.9353 12 6 2.8796 -3.1748 -1.9005 13 6 2.4173 -3.4897 -3.3300 14 6 1.8270 -4.8901 -3.3178 15 1 2.5444 -5.6241 -2.9507 16 6 1.2023 -5.3432 -4.6469 17 6 0.1488 -6.3783 -4.1666 18 7 -0.1566 -6.0624 -2.7517 19 6 -0.9634 -6.7850 -1.9137 20 1 -1.1152 -6.4581 -0.8956 21 6 -1.5862 -7.9374 -2.3728 22 7 -1.4008 -8.3361 -3.6135 23 14 -2.6873 -8.9226 -1.2299 24 1 -4.0823 -8.4249 -1.3357 25 1 -2.6429 -10.3564 -1.6140 26 1 -2.2120 -8.7700 0.1687 27 6 0.5605 -4.8409 -2.4190 28 1 -0.0397 -3.9764 -2.7029 29 6 1.0313 -4.6839 -0.9847 30 1 -0.3633 -0.0962 1.0231 31 1 -0.3633 0.9342 -0.4284 32 1 -0.3633 -0.8379 -0.5948 33 1 1.6936 2.1313 0.0007 34 1 4.5078 2.6447 0.8822 35 1 4.1848 -2.0810 0.0039 36 1 3.1770 -2.1277 -1.8427 37 1 3.7354 -3.8042 -1.6565 38 1 3.2660 -3.4509 -4.0127 39 1 1.6591 -2.7704 -3.6397 40 1 1.9476 -5.8141 -5.2876 41 1 0.7233 -4.5077 -5.1575 42 1 0.5570 -7.3861 -4.2424 43 1 -0.7556 -6.2947 -4.7694 44 1 -1.8363 -9.1411 -3.9344 45 1 1.6664 -5.5246 -0.7053 46 1 0.1752 -4.6230 -0.3128 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001042230662.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:20 Heat of formation + Delta-G solvation = -27.241610 kcal Electronic energy + Delta-G solvation = -29209.865731 eV Core-core repulsion = 25292.686764 eV Total energy + Delta-G solvation = -3917.178967 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 331.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.20891 -41.01238 -39.69231 -38.02949 -36.95966 -34.98670 -34.67354 -32.97764 -32.25064 -30.60821 -30.03697 -28.98613 -26.60432 -26.06037 -24.56939 -23.69094 -23.25426 -21.81608 -21.48608 -20.50382 -19.42666 -18.89341 -18.41988 -18.01184 -17.24852 -16.88507 -16.80660 -16.11446 -15.99776 -15.71570 -15.59230 -15.32016 -14.81505 -14.80047 -14.41918 -14.17078 -14.08395 -13.86134 -13.80244 -13.66608 -13.48358 -13.14312 -13.09820 -13.05401 -12.75427 -12.72136 -12.53820 -12.13009 -12.00963 -11.77919 -11.55099 -11.41764 -11.23810 -11.04764 -10.73458 -10.68006 -10.53867 -9.97369 -9.76118 -8.91636 -7.86852 -5.21858 -0.42795 0.04084 1.43753 1.44468 1.46272 1.53952 1.81487 2.35344 2.48715 2.68045 3.27325 3.31644 3.46904 3.51214 3.55013 3.77132 3.88577 3.95198 3.97410 4.16679 4.24420 4.27249 4.29918 4.34665 4.50519 4.56697 4.60198 4.63385 4.66974 4.70480 4.80746 4.85557 4.89590 4.98732 5.08747 5.13310 5.14786 5.22712 5.34474 5.36655 5.47988 5.57924 5.65906 5.77870 6.18374 6.27466 6.54215 6.77404 6.97460 7.07435 7.75802 8.42719 9.24135 Molecular weight = 331.17amu Principal moments of inertia in cm(-1) A = 0.019779 B = 0.003182 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1415.289727 B = 8798.493636 C = 9617.761231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.016 3.984 3 C -0.182 4.182 4 C 0.331 3.669 5 O -0.486 6.486 6 N -0.524 5.524 7 C 0.167 3.833 8 C -0.204 4.204 9 C 0.563 3.437 10 O -0.572 6.572 11 N -0.594 5.594 12 C 0.098 3.902 13 C -0.110 4.110 14 C -0.097 4.097 15 H 0.080 0.920 16 C -0.122 4.122 17 C 0.181 3.819 18 N -0.612 5.612 19 C -0.236 4.236 20 H 0.077 0.923 21 C -0.062 4.062 22 N -0.949 5.949 23 Si 0.971 3.029 24 H -0.289 1.289 25 H -0.291 1.291 26 H -0.271 1.271 27 C 0.148 3.852 28 H 0.008 0.992 29 C 0.131 3.869 30 H 0.084 0.916 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.176 0.824 34 H 0.426 0.574 35 H 0.183 0.817 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.086 0.914 41 H 0.068 0.932 42 H 0.023 0.977 43 H -0.001 1.001 44 H 0.247 0.753 45 H 0.071 0.929 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.382 21.088 4.399 25.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.008 3.992 3 C -0.202 4.202 4 C 0.153 3.847 5 O -0.297 6.297 6 N -0.243 5.243 7 C 0.009 3.991 8 C -0.209 4.209 9 C 0.351 3.649 10 O -0.452 6.452 11 N -0.326 5.326 12 C -0.023 4.023 13 C -0.148 4.148 14 C -0.116 4.116 15 H 0.098 0.902 16 C -0.160 4.160 17 C 0.056 3.944 18 N -0.337 5.337 19 C -0.365 4.365 20 H 0.095 0.905 21 C -0.255 4.255 22 N -0.598 5.598 23 Si 0.800 3.200 24 H -0.216 1.216 25 H -0.218 1.218 26 H -0.196 1.196 27 C 0.041 3.959 28 H 0.026 0.974 29 C 0.008 3.992 30 H 0.103 0.897 31 H 0.122 0.878 32 H 0.070 0.930 33 H 0.193 0.807 34 H 0.288 0.712 35 H 0.200 0.800 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.131 0.869 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.017 0.983 44 H 0.056 0.944 45 H 0.089 0.911 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 13.701 20.812 4.245 25.276 hybrid contribution -2.027 -1.164 0.896 2.503 sum 11.675 19.648 5.140 23.426 Atomic orbital electron populations 1.20895 0.88997 1.03883 1.03622 1.20398 0.97532 0.90953 0.90328 1.22123 0.93458 0.99758 1.04886 1.19508 0.87524 0.85410 0.92235 1.84674 1.75655 1.33187 1.36182 1.67262 1.42182 0.98616 1.16255 1.22897 0.89316 0.95992 0.90918 1.20736 0.96062 0.93338 1.10791 1.18416 0.81842 0.83709 0.80934 1.90787 1.35468 1.79991 1.38985 1.48249 1.35700 1.17280 1.31344 1.22151 0.88818 1.03247 0.88126 1.21714 1.02186 0.94550 0.96354 1.22215 0.95933 0.97796 0.95706 0.90200 1.22602 0.97996 0.98614 0.96836 1.21358 0.94149 0.95573 0.83273 1.44428 1.53524 1.26105 1.09677 1.19320 1.19936 1.03662 0.93595 0.90527 1.25551 1.02314 0.99598 0.98039 1.70150 1.48080 1.25465 1.16063 0.85185 0.78666 0.77660 0.78524 1.21565 1.21758 1.19593 1.21110 0.92489 0.88615 0.93732 0.97444 1.21345 0.95298 0.84857 0.97724 0.89749 0.87830 0.93038 0.80704 0.71170 0.80003 0.88225 0.88745 0.86929 0.91836 0.89551 0.91340 0.95826 0.98292 0.94373 0.91076 0.92037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.33 9.09 71.24 0.65 -1.69 16 2 C 0.02 0.32 5.94 -19.43 -0.12 0.20 16 3 C -0.18 -2.76 9.70 22.43 0.22 -2.54 16 4 C 0.33 5.58 7.74 84.82 0.66 6.23 16 5 O -0.49 -6.16 13.55 -88.03 -1.19 -7.36 16 6 N -0.52 -10.38 10.37 -307.81 -3.19 -13.57 16 7 C 0.17 3.24 8.62 85.04 0.73 3.97 16 8 C -0.20 -4.72 4.82 -20.00 -0.10 -4.81 16 9 C 0.56 17.05 6.26 86.72 0.54 17.59 16 10 O -0.57 -22.04 15.61 -3.99 -0.06 -22.10 16 11 N -0.59 -17.20 3.02 -823.24 -2.48 -19.68 16 12 C 0.10 2.00 5.22 86.53 0.45 2.45 16 13 C -0.11 -2.39 5.70 30.43 0.17 -2.21 16 14 C -0.10 -3.01 2.62 -10.08 -0.03 -3.04 16 15 H 0.08 2.51 8.13 -2.39 -0.02 2.49 16 16 C -0.12 -4.20 6.54 31.62 0.21 -3.99 16 17 C 0.18 8.84 5.45 86.85 0.47 9.31 16 18 N -0.61 -31.38 3.35 -669.33 -2.24 -33.62 16 19 C -0.24 -13.39 9.88 84.03 0.83 -12.56 16 20 H 0.08 4.27 7.41 -2.91 -0.02 4.25 16 21 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 22 N -0.95 -57.38 10.44 21.65 0.23 -57.16 16 23 Si 0.97 46.85 29.55 68.60 2.03 48.87 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.10 16 25 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 26 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 27 C 0.15 6.00 2.77 45.59 0.13 6.13 16 28 H 0.01 0.35 7.90 -2.38 -0.02 0.33 16 29 C 0.13 4.90 5.68 85.73 0.49 5.39 16 30 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.10 1.38 8.07 -2.39 -0.02 1.36 16 32 H 0.05 1.31 7.28 -2.39 -0.02 1.29 16 33 H 0.18 1.60 8.06 -2.91 -0.02 1.57 16 34 H 0.43 1.00 9.06 -74.05 -0.67 0.33 16 35 H 0.18 2.80 7.31 -2.91 -0.02 2.78 16 36 H 0.10 1.72 4.85 -2.39 -0.01 1.71 16 37 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.06 1.48 7.97 -2.39 -0.02 1.46 16 40 H 0.09 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 42 H 0.02 1.28 7.21 -2.39 -0.02 1.27 16 43 H 0.00 -0.07 7.78 -2.39 -0.02 -0.08 16 44 H 0.25 14.55 8.31 -92.71 -0.77 13.78 16 45 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.06 2.68 6.78 -2.39 -0.02 2.66 16 Total: -1.00 -77.16 363.67 -0.80 -77.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 0.34 Total: 9.32 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: 5.77 Total: 17.33 kcal Atomic # 7 Polarization: -116.34 SS G_CDS: -7.69 Total: -124.03 kcal Atomic # 8 Polarization: -28.21 SS G_CDS: -1.25 Total: -29.46 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.87 kcal Total: -77.16 -0.80 -77.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001042230662.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.720 kcal (2) G-P(sol) polarization free energy of solvation -77.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.804 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds